Daisy Castillo-Guzman, Frédéric Chédin. DNA Repair (Amst) 2021
Times Cited: 7
Times Cited: 7
Times Cited
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Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
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Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
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Best practices for the visualization, mapping, and manipulation of R-loops.
Frédéric Chédin, Stella R Hartono, Lionel A Sanz, Vincent Vanoosthuyse. EMBO J 2021
Frédéric Chédin, Stella R Hartono, Lionel A Sanz, Vincent Vanoosthuyse. EMBO J 2021
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Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
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R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
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Catalytically inactive, purified RNase H1: A specific and sensitive probe for RNA-DNA hybrid imaging.
Magdalena P Crossley, Joshua R Brickner, Chenlin Song, Su Mon Thin Zar, Su S Maw, Frédéric Chédin, Miaw-Sheue Tsai, Karlene A Cimprich. J Cell Biol 2021
Magdalena P Crossley, Joshua R Brickner, Chenlin Song, Su Mon Thin Zar, Su S Maw, Frédéric Chédin, Miaw-Sheue Tsai, Karlene A Cimprich. J Cell Biol 2021
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R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
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N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
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Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids.
John A Smolka, Lionel A Sanz, Stella R Hartono, Frédéric Chédin. J Cell Biol 2021
John A Smolka, Lionel A Sanz, Stella R Hartono, Frédéric Chédin. J Cell Biol 2021
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Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
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R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
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Ultra-deep Coverage Single-molecule R-loop Footprinting Reveals Principles of R-loop Formation.
Maika Malig, Stella R Hartono, Jenna M Giafaglione, Lionel A Sanz, Frederic Chedin. J Mol Biol 2020
Maika Malig, Stella R Hartono, Jenna M Giafaglione, Lionel A Sanz, Frederic Chedin. J Mol Biol 2020
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S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
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Mapping Native R-Loops Genome-wide Using a Targeted Nuclease Approach.
Qingqing Yan, Emily J Shields, Roberto Bonasio, Kavitha Sarma. Cell Rep 2019
Qingqing Yan, Emily J Shields, Roberto Bonasio, Kavitha Sarma. Cell Rep 2019
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Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD.
Marcin Nowotny, Susana M Cerritelli, Rodolfo Ghirlando, Sergei A Gaidamakov, Robert J Crouch, Wei Yang. EMBO J 2008
Marcin Nowotny, Susana M Cerritelli, Rodolfo Ghirlando, Sergei A Gaidamakov, Robert J Crouch, Wei Yang. EMBO J 2008
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Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
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The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations.
Liang Chen, Jia-Yu Chen, Yi-Jou Huang, Ying Gu, Jinsong Qiu, Hao Qian, Changwei Shao, Xuan Zhang, Jing Hu, Hairi Li,[...]. Mol Cell 2018
Liang Chen, Jia-Yu Chen, Yi-Jou Huang, Ying Gu, Jinsong Qiu, Hao Qian, Changwei Shao, Xuan Zhang, Jing Hu, Hairi Li,[...]. Mol Cell 2018
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The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
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Structure of human RNase H1 complexed with an RNA/DNA hybrid: insight into HIV reverse transcription.
Marcin Nowotny, Sergei A Gaidamakov, Rodolfo Ghirlando, Susana M Cerritelli, Robert J Crouch, Wei Yang. Mol Cell 2007
Marcin Nowotny, Sergei A Gaidamakov, Rodolfo Ghirlando, Susana M Cerritelli, Robert J Crouch, Wei Yang. Mol Cell 2007
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A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
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Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
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Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
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Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
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Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
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GADD45A binds R-loops and recruits TET1 to CpG island promoters.
Khelifa Arab, Emil Karaulanov, Michael Musheev, Philipp Trnka, Andrea Schäfer, Ingrid Grummt, Christof Niehrs. Nat Genet 2019
Khelifa Arab, Emil Karaulanov, Michael Musheev, Philipp Trnka, Andrea Schäfer, Ingrid Grummt, Christof Niehrs. Nat Genet 2019
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Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
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R-Loops Promote Antisense Transcription across the Mammalian Genome.
Sue Mei Tan-Wong, Somdutta Dhir, Nick J Proudfoot. Mol Cell 2019
Sue Mei Tan-Wong, Somdutta Dhir, Nick J Proudfoot. Mol Cell 2019
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R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1.
Jia-Yu Chen, Xuan Zhang, Xiang-Dong Fu, Liang Chen. Nat Protoc 2019
Jia-Yu Chen, Xuan Zhang, Xiang-Dong Fu, Liang Chen. Nat Protoc 2019
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R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
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Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination.
Pablo Huertas, Andrés Aguilera. Mol Cell 2003
Pablo Huertas, Andrés Aguilera. Mol Cell 2003
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Genomic profiling of native R loops with a DNA-RNA hybrid recognition sensor.
Kang Wang, Honghong Wang, Conghui Li, Zhinang Yin, Ruijing Xiao, Qiuzi Li, Ying Xiang, Wen Wang, Jian Huang, Liang Chen,[...]. Sci Adv 2021
Kang Wang, Honghong Wang, Conghui Li, Zhinang Yin, Ruijing Xiao, Qiuzi Li, Ying Xiang, Wen Wang, Jian Huang, Liang Chen,[...]. Sci Adv 2021
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EWS-FLI1 increases transcription to cause R-loops and block BRCA1 repair in Ewing sarcoma.
Aparna Gorthi, July Carolina Romero, Eva Loranc, Lin Cao, Liesl A Lawrence, Elicia Goodale, Amanda Balboni Iniguez, Xavier Bernard, V Pragathi Masamsetti, Sydney Roston,[...]. Nature 2018
Aparna Gorthi, July Carolina Romero, Eva Loranc, Lin Cao, Liesl A Lawrence, Elicia Goodale, Amanda Balboni Iniguez, Xavier Bernard, V Pragathi Masamsetti, Sydney Roston,[...]. Nature 2018
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The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast.
Stella R Hartono, Amélie Malapert, Pénélope Legros, Pascal Bernard, Frédéric Chédin, Vincent Vanoosthuyse. J Mol Biol 2018
Stella R Hartono, Amélie Malapert, Pénélope Legros, Pascal Bernard, Frédéric Chédin, Vincent Vanoosthuyse. J Mol Biol 2018
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ARID1A regulates R-loop associated DNA replication stress.
Shuhe Tsai, Louis-Alexandre Fournier, Emily Yun-Chia Chang, James P Wells, Sean W Minaker, Yi Dan Zhu, Alan Ying-Hsu Wang, Yemin Wang, David G Huntsman, Peter C Stirling. PLoS Genet 2021
Shuhe Tsai, Louis-Alexandre Fournier, Emily Yun-Chia Chang, James P Wells, Sean W Minaker, Yi Dan Zhu, Alan Ying-Hsu Wang, Yemin Wang, David G Huntsman, Peter C Stirling. PLoS Genet 2021
28
ATAD5 restricts R-loop formation through PCNA unloading and RNA helicase maintenance at the replication fork.
Sangin Kim, Nalae Kang, Su Hyung Park, James Wells, Taejoo Hwang, Eunjin Ryu, Byung-Gyu Kim, Sunyoung Hwang, Seong-Jung Kim, Sukhyun Kang,[...]. Nucleic Acids Res 2020
Sangin Kim, Nalae Kang, Su Hyung Park, James Wells, Taejoo Hwang, Eunjin Ryu, Byung-Gyu Kim, Sunyoung Hwang, Seong-Jung Kim, Sukhyun Kang,[...]. Nucleic Acids Res 2020
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ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
Guangchuang Yu, Li-Gen Wang, Qing-Yu He. Bioinformatics 2015
Guangchuang Yu, Li-Gen Wang, Qing-Yu He. Bioinformatics 2015
28
UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide.
Carmen Pérez-Calero, Aleix Bayona-Feliu, Xiaoyu Xue, Sonia I Barroso, Sergio Muñoz, Víctor M González-Basallote, Patrick Sung, Andrés Aguilera. Genes Dev 2020
Carmen Pérez-Calero, Aleix Bayona-Feliu, Xiaoyu Xue, Sonia I Barroso, Sergio Muñoz, Víctor M González-Basallote, Patrick Sung, Andrés Aguilera. Genes Dev 2020
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Spliceosome Mutations Induce R Loop-Associated Sensitivity to ATR Inhibition in Myelodysplastic Syndromes.
Hai Dang Nguyen, Wan Yee Leong, Weiling Li, Pavankumar N G Reddy, Jack D Sullivan, Matthew J Walter, Lee Zou, Timothy A Graubert. Cancer Res 2018
Hai Dang Nguyen, Wan Yee Leong, Weiling Li, Pavankumar N G Reddy, Jack D Sullivan, Matthew J Walter, Lee Zou, Timothy A Graubert. Cancer Res 2018
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A mitosis-specific and R loop-driven ATR pathway promotes faithful chromosome segregation.
Lilian Kabeche, Hai Dang Nguyen, Rémi Buisson, Lee Zou. Science 2018
Lilian Kabeche, Hai Dang Nguyen, Rémi Buisson, Lee Zou. Science 2018
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m6A promotes R-loop formation to facilitate transcription termination.
Xin Yang, Qian-Lan Liu, Wei Xu, Yi-Chang Zhang, Ying Yang, Lin-Fang Ju, Jing Chen, Yu-Sheng Chen, Kuan Li, Jie Ren,[...]. Cell Res 2019
Xin Yang, Qian-Lan Liu, Wei Xu, Yi-Chang Zhang, Ying Yang, Lin-Fang Ju, Jing Chen, Yu-Sheng Chen, Kuan Li, Jie Ren,[...]. Cell Res 2019
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Excessive R-loops trigger an inflammatory cascade leading to increased HSPC production.
Joshua T Weinreb, Noura Ghazale, Kith Pradhan, Varun Gupta, Kathryn S Potts, Brad Tricomi, Noah J Daniels, Richard A Padgett, Sofia De Oliveira, Amit Verma,[...]. Dev Cell 2021
Joshua T Weinreb, Noura Ghazale, Kith Pradhan, Varun Gupta, Kathryn S Potts, Brad Tricomi, Noah J Daniels, Richard A Padgett, Sofia De Oliveira, Amit Verma,[...]. Dev Cell 2021
28
Dual Processing of R-Loops and Topoisomerase I Induces Transcription-Dependent DNA Double-Strand Breaks.
Agnese Cristini, Giulia Ricci, Sébastien Britton, Simona Salimbeni, Shar-Yin Naomi Huang, Jessica Marinello, Patrick Calsou, Yves Pommier, Gilles Favre, Giovanni Capranico,[...]. Cell Rep 2019
Agnese Cristini, Giulia Ricci, Sébastien Britton, Simona Salimbeni, Shar-Yin Naomi Huang, Jessica Marinello, Patrick Calsou, Yves Pommier, Gilles Favre, Giovanni Capranico,[...]. Cell Rep 2019
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Arginine methylation of the DDX5 helicase RGG/RG motif by PRMT5 regulates resolution of RNA:DNA hybrids.
Sofiane Y Mersaoui, Zhenbao Yu, Yan Coulombe, Martin Karam, Franciele F Busatto, Jean-Yves Masson, Stéphane Richard. EMBO J 2019
Sofiane Y Mersaoui, Zhenbao Yu, Yan Coulombe, Martin Karam, Franciele F Busatto, Jean-Yves Masson, Stéphane Richard. EMBO J 2019
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Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria.
Aziz El Hage, Shaun Webb, Alastair Kerr, David Tollervey. PLoS Genet 2014
Aziz El Hage, Shaun Webb, Alastair Kerr, David Tollervey. PLoS Genet 2014
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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
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Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex.
Belén Gómez-González, Andrés Aguilera. Proc Natl Acad Sci U S A 2007
Belén Gómez-González, Andrés Aguilera. Proc Natl Acad Sci U S A 2007
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Model-based analysis of ChIP-Seq (MACS).
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
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METTL3 and N6-Methyladenosine Promote Homologous Recombination-Mediated Repair of DSBs by Modulating DNA-RNA Hybrid Accumulation.
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28
RNA/DNA Hybrid Interactome Identifies DXH9 as a Molecular Player in Transcriptional Termination and R-Loop-Associated DNA Damage.
Agnese Cristini, Matthias Groh, Maiken S Kristiansen, Natalia Gromak. Cell Rep 2018
Agnese Cristini, Matthias Groh, Maiken S Kristiansen, Natalia Gromak. Cell Rep 2018
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.