A citation-based method for searching scientific literature

Anjali Rao, Dalia Barkley, Gustavo S França, Itai Yanai. Nature 2021
Times Cited: 6







List of co-cited articles
16 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Tales from the crypt: new insights into intestinal stem cells.
Helmuth Gehart, Hans Clevers. Nat Rev Gastroenterol Hepatol 2019
233
33

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
732
33

Single-cell RNA sequencing technologies and bioinformatics pipelines.
Byungjin Hwang, Ji Hyun Lee, Duhee Bang. Exp Mol Med 2018
403
33


Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars.
Bastiaan Spanjaard, Bo Hu, Nina Mitic, Pedro Olivares-Chauvet, Sharan Janjuha, Nikolay Ninov, Jan Philipp Junker. Nat Biotechnol 2018
196
33

mRNA-Seq whole-transcriptome analysis of a single cell.
Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui,[...]. Nat Methods 2009
33

Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis.
Andreas E Moor, Yotam Harnik, Shani Ben-Moshe, Efi E Massasa, Milena Rozenberg, Raya Eilam, Keren Bahar Halpern, Shalev Itzkovitz. Cell 2018
112
33


Plasticity and Clonality of Cancer Cell States.
Dalia Barkley, Itai Yanai. Trends Cancer 2019
5
40

The Stress-Like Cancer Cell State Is a Consistent Component of Tumorigenesis.
Maayan Baron, Mohita Tagore, Miranda V Hunter, Isabella S Kim, Reuben Moncada, Yun Yan, Nathaniel R Campbell, Richard M White, Itai Yanai. Cell Syst 2020
13
33

Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer.
Woosung Chung, Hye Hyeon Eum, Hae-Ock Lee, Kyung-Min Lee, Han-Byoel Lee, Kyu-Tae Kim, Han Suk Ryu, Sangmin Kim, Jeong Eon Lee, Yeon Hee Park,[...]. Nat Commun 2017
353
33

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas.
Reuben Moncada, Dalia Barkley, Florian Wagner, Marta Chiodin, Joseph C Devlin, Maayan Baron, Cristina H Hajdu, Diane M Simeone, Itai Yanai. Nat Biotechnol 2020
121
33

Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma.
Nayoung Kim, Hong Kwan Kim, Kyungjong Lee, Yourae Hong, Jong Ho Cho, Jung Won Choi, Jung-Il Lee, Yeon-Lim Suh, Bo Mi Ku, Hye Hyeon Eum,[...]. Nat Commun 2020
101
33

In situ genome sequencing resolves DNA sequence and structure in intact biological samples.
Andrew C Payne, Zachary D Chiang, Paul L Reginato, Sarah M Mangiameli, Evan M Murray, Chun-Chen Yao, Styliani Markoulaki, Andrew S Earl, Ajay S Labade, Rudolf Jaenisch,[...]. Science 2021
25
33

Imaging individual mRNA molecules using multiple singly labeled probes.
Arjun Raj, Patrick van den Bogaard, Scott A Rifkin, Alexander van Oudenaarden, Sanjay Tyagi. Nat Methods 2008
33

Visualization of single RNA transcripts in situ.
A M Femino, F S Fay, K Fogarty, R H Singer. Science 1998
795
33

Single-Cell Transcriptomics Meets Lineage Tracing.
Lennart Kester, Alexander van Oudenaarden. Cell Stem Cell 2018
154
16

Requirement of Math1 for secretory cell lineage commitment in the mouse intestine.
Q Yang, N A Bermingham, M J Finegold, H Y Zoghbi. Science 2001
648
16

Adult mouse hematopoietic stem cells: purification and single-cell assays.
Hideo Ema, Yohei Morita, Satoshi Yamazaki, Azusa Matsubara, Jun Seita, Yuko Tadokoro, Hiroyoshi Kondo, Hina Takano, Hiromitsu Nakauchi. Nat Protoc 2006
129
16

An enduring role for quiescent stem cells.
Camilla A Richmond, Manasvi S Shah, Diana L Carlone, David T Breault. Dev Dyn 2016
11
16

Single-Cell Studies of Intestinal Stem Cell Heterogeneity During Homeostasis and Regeneration.
Maxim Norkin, Claudia Capdevila, Ruben I Calderon, Tianhong Su, Maria Trifas, Paloma Ordóñez-Morán, Kelley S Yan. Methods Mol Biol 2020
2
50

Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells.
Unmesh Jadhav, Madhurima Saxena, Nicholas K O'Neill, Assieh Saadatpour, Guo-Cheng Yuan, Zachary Herbert, Kazutaka Murata, Ramesh A Shivdasani. Cell Stem Cell 2017
115
16

Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Kelley S Yan, Olivier Gevaert, Grace X Y Zheng, Benedict Anchang, Christopher S Probert, Kathryn A Larkin, Paige S Davies, Zhuan-Fen Cheng, John S Kaddis, Arnold Han,[...]. Cell Stem Cell 2017
166
16

Molecular recording of mammalian embryogenesis.
Michelle M Chan, Zachary D Smith, Stefanie Grosswendt, Helene Kretzmer, Thomas M Norman, Britt Adamson, Marco Jost, Jeffrey J Quinn, Dian Yang, Matthew G Jones,[...]. Nature 2019
104
16

The intestinal stem cell markers Bmi1 and Lgr5 identify two functionally distinct populations.
Kelley S Yan, Luis A Chia, Xingnan Li, Akifumi Ootani, James Su, Josephine Y Lee, Nan Su, Yuling Luo, Sarah C Heilshorn, Manuel R Amieva,[...]. Proc Natl Acad Sci U S A 2012
520
16

Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell.
Arshad Ayyaz, Sandeep Kumar, Bruno Sangiorgi, Bibaswan Ghoshal, Jessica Gosio, Shaida Ouladan, Mardi Fink, Seda Barutcu, Daniel Trcka, Jess Shen,[...]. Nature 2019
126
16

Neurogenin3 is differentially required for endocrine cell fate specification in the intestinal and gastric epithelium.
Marjorie Jenny, Céline Uhl, Colette Roche, Isabelle Duluc, Valérie Guillermin, Francois Guillemot, Jan Jensen, Michèle Kedinger, Gérard Gradwohl. EMBO J 2002
334
16

Interleukin 22 Expands Transit-Amplifying Cells While Depleting Lgr5+ Stem Cells via Inhibition of Wnt and Notch Signaling.
Juan-Min Zha, Hua-Shan Li, Qian Lin, Wei-Ting Kuo, Zhi-Hui Jiang, Pei-Yun Tsai, Ning Ding, Jia Wu, Shao-Fang Xu, Yi-Tang Wang,[...]. Cell Mol Gastroenterol Hepatol 2019
33
16

Tissue regeneration: Reserve or reverse?
Ramesh A Shivdasani, Hans Clevers, Frederic J de Sauvage. Science 2021
5
20

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Madhvi Menon, Shahin Mohammadi, Jose Davila-Velderrain, Brittany A Goods, Tanina D Cadwell, Yu Xing, Anat Stemmer-Rachamimov, Alex K Shalek, John Christopher Love, Manolis Kellis,[...]. Nat Commun 2019
66
16



Notch signaling modulates proliferation and differentiation of intestinal crypt base columnar stem cells.
Kelli L VanDussen, Alexis J Carulli, Theresa M Keeley, Sanjeevkumar R Patel, Brent J Puthoff, Scott T Magness, Ivy T Tran, Ivan Maillard, Christian Siebel, Åsa Kolterud,[...]. Development 2012
337
16


Single-Cell Transcriptional Profiling of the Intestinal Epithelium.
Claudia Capdevila, Ruben I Calderon, Erin C Bush, Kismet Sheldon-Collins, Peter A Sims, Kelley S Yan. Methods Mol Biol 2020
1
100

Intestinal label-retaining cells are secretory precursors expressing Lgr5.
Simon J A Buczacki, Heather Ireland Zecchini, Anna M Nicholson, Roslin Russell, Louis Vermeulen, Richard Kemp, Douglas J Winton. Nature 2013
496
16

Subepithelial telocytes are an important source of Wnts that supports intestinal crypts.
Michal Shoshkes-Carmel, Yue J Wang, Kirk J Wangensteen, Beáta Tóth, Ayano Kondo, Efi E Massasa, Shalev Itzkovitz, Klaus H Kaestner. Nature 2018
190
16

Developmental barcoding of whole mouse via homing CRISPR.
Reza Kalhor, Kian Kalhor, Leo Mejia, Kathleen Leeper, Amanda Graveline, Prashant Mali, George M Church. Science 2018
136
16

A stem cell population at the anorectal junction maintains homeostasis and participates in tissue regeneration.
Louciné Mitoyan, Véronique Chevrier, Hector Hernandez-Vargas, Alexane Ollivier, Zeinab Homayed, Julie Pannequin, Flora Poizat, Cécile De Biasi-Cador, Emmanuelle Charafe-Jauffret, Christophe Ginestier,[...]. Nat Commun 2021
4
25

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers.
Javier Muñoz, Daniel E Stange, Arnout G Schepers, Marc van de Wetering, Bon-Kyoung Koo, Shalev Itzkovitz, Richard Volckmann, Kevin S Kung, Jan Koster, Sorina Radulescu,[...]. EMBO J 2012
468
16

A single-cell survey of the small intestinal epithelium.
Adam L Haber, Moshe Biton, Noga Rogel, Rebecca H Herbst, Karthik Shekhar, Christopher Smillie, Grace Burgin, Toni M Delorey, Michael R Howitt, Yarden Katz,[...]. Nature 2017
530
16

Identification of a cKit(+) colonic crypt base secretory cell that supports Lgr5(+) stem cells in mice.
Michael E Rothenberg, Ysbrand Nusse, Tomer Kalisky, John J Lee, Piero Dalerba, Ferenc Scheeren, Neethan Lobo, Subhash Kulkarni, Sopheak Sim, Dalong Qian,[...]. Gastroenterology 2012
153
16

Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells.
Kazutaka Murata, Unmesh Jadhav, Shariq Madha, Johan van Es, Justin Dean, Alessia Cavazza, Kai Wucherpfennig, Franziska Michor, Hans Clevers, Ramesh A Shivdasani. Cell Stem Cell 2020
55
16

Enteroendocrine and tuft cells support Lgr5 stem cells on Paneth cell depletion.
Johan H van Es, Kay Wiebrands, Carmen López-Iglesias, Marc van de Wetering, Laura Zeinstra, Maaike van den Born, Jeroen Korving, Nobuo Sasaki, Peter J Peters, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2019
31
16

Characterization of radioresistant epithelial stem cell heterogeneity in the damaged mouse intestine.
Taku Sato, Miwako Sase, Shun Ishikawa, Mihoko Kajita, Jumpei Asano, Toshiro Sato, Yoshiyuki Mori, Toshiaki Ohteki. Sci Rep 2020
7
16

Lgr5+ telocytes are a signaling source at the intestinal villus tip.
Keren Bahar Halpern, Hassan Massalha, Rachel K Zwick, Andreas E Moor, David Castillo-Azofeifa, Milena Rozenberg, Lydia Farack, Adi Egozi, Dan R Miller, Inna Averbukh,[...]. Nat Commun 2020
31
16


Mutant neurogenin-3 in congenital malabsorptive diarrhea.
Jiafang Wang, Galen Cortina, S Vincent Wu, Robert Tran, Jang-Hyeon Cho, Ming-Jer Tsai, Travis J Bailey, Milan Jamrich, Marvin E Ament, William R Treem,[...]. N Engl J Med 2006
203
16

De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.
Dominic Grün, Mauro J Muraro, Jean-Charles Boisset, Kay Wiebrands, Anna Lyubimova, Gitanjali Dharmadhikari, Maaike van den Born, Johan van Es, Erik Jansen, Hans Clevers,[...]. Cell Stem Cell 2016
233
16

Unravelling cellular relationships during development and regeneration using genetic lineage tracing.
Chloé S Baron, Alexander van Oudenaarden. Nat Rev Mol Cell Biol 2019
50
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.