A citation-based method for searching scientific literature

Shaopeng Wang, Malgorzata J Latallo, Zhe Zhang, Bo Huang, Dmitriy G Bobrovnikov, Daoyuan Dong, Nathan M Livingston, Wilson Tjoeng, Lindsey R Hayes, Jeffrey D Rothstein, Lyle W Ostrow, Bin Wu, Shuying Sun. Nat Commun 2021
Times Cited: 2







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


CUG initiation and frameshifting enable production of dipeptide repeat proteins from ALS/FTD C9ORF72 transcripts.
Ricardos Tabet, Laure Schaeffer, Fernande Freyermuth, Melanie Jambeau, Michael Workman, Chao-Zong Lee, Chun-Chia Lin, Jie Jiang, Karen Jansen-West, Hussein Abou-Hamdan,[...]. Nat Commun 2018
64
100

Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration.
Clotilde Lagier-Tourenne, Michael Baughn, Frank Rigo, Shuying Sun, Patrick Liu, Hai-Ri Li, Jie Jiang, Andrew T Watt, Seung Chun, Melanie Katz,[...]. Proc Natl Acad Sci U S A 2013
367
100

A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD.
Alan E Renton, Elisa Majounie, Adrian Waite, Javier Simón-Sánchez, Sara Rollinson, J Raphael Gibbs, Jennifer C Schymick, Hannu Laaksovirta, John C van Swieten, Liisa Myllykangas,[...]. Neuron 2011
100

Unconventional translation of C9ORF72 GGGGCC expansion generates insoluble polypeptides specific to c9FTD/ALS.
Peter E A Ash, Kevin F Bieniek, Tania F Gendron, Thomas Caulfield, Wen-Lang Lin, Mariely Dejesus-Hernandez, Marka M van Blitterswijk, Karen Jansen-West, Joseph W Paul, Rosa Rademakers,[...]. Neuron 2013
680
100

Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS.
Mariely DeJesus-Hernandez, Ian R Mackenzie, Bradley F Boeve, Adam L Boxer, Matt Baker, Nicola J Rutherford, Alexandra M Nicholson, NiCole A Finch, Heather Flynn, Jennifer Adamson,[...]. Neuron 2011
100

The C9orf72 GGGGCC repeat is translated into aggregating dipeptide-repeat proteins in FTLD/ALS.
Kohji Mori, Shih-Ming Weng, Thomas Arzberger, Stephanie May, Kristin Rentzsch, Elisabeth Kremmer, Bettina Schmid, Hans A Kretzschmar, Marc Cruts, Christine Van Broeckhoven,[...]. Science 2013
769
100

RAN proteins and RNA foci from antisense transcripts in C9ORF72 ALS and frontotemporal dementia.
Tao Zu, Yuanjing Liu, Monica Bañez-Coronel, Tammy Reid, Olga Pletnikova, Jada Lewis, Timothy M Miller, Matthew B Harms, Annet E Falchook, S H Subramony,[...]. Proc Natl Acad Sci U S A 2013
458
100

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.
Agnieszka Rybak-Wolf, Christin Stottmeister, Petar Glažar, Marvin Jens, Natalia Pino, Sebastian Giusti, Mor Hanan, Mikaela Behm, Osnat Bartok, Reut Ashwal-Fluss,[...]. Mol Cell 2015
50

Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity.
Chu-Xiao Liu, Xiang Li, Fang Nan, Shan Jiang, Xiang Gao, Si-Kun Guo, Wei Xue, Yange Cui, Kaige Dong, Huihua Ding,[...]. Cell 2019
219
50

Synonymous modification results in high-fidelity gene expression of repetitive protein and nucleotide sequences.
Bin Wu, Veronika Miskolci, Hanae Sato, Evelina Tutucci, Charles A Kenworthy, Sara K Donnelly, Young J Yoon, Dianne Cox, Robert H Singer, Louis Hodgson. Genes Dev 2015
41
50

RAN translation at C9orf72-associated repeat expansions is selectively enhanced by the integrated stress response.
Katelyn M Green, M Rebecca Glineburg, Michael G Kearse, Brittany N Flores, Alexander E Linsalata, Stephen J Fedak, Aaron C Goldstrohm, Sami J Barmada, Peter K Todd. Nat Commun 2017
81
50

Lariat intronic RNAs in the cytoplasm of vertebrate cells.
Gaëlle J S Talhouarne, Joseph G Gall. Proc Natl Acad Sci U S A 2018
39
50

Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor.
Yehoshua Enuka, Mattia Lauriola, Morris E Feldman, Aldema Sas-Chen, Igor Ulitsky, Yosef Yarden. Nucleic Acids Res 2016
220
50

RNA Export through the NPC in Eukaryotes.
Masumi Okamura, Haruko Inose, Seiji Masuda. Genes (Basel) 2015
54
50

Visualization of single RNA transcripts in situ.
A M Femino, F S Fay, K Fogarty, R H Singer. Science 1998
771
50

CRISPR-Cas9 Screens Identify the RNA Helicase DDX3X as a Repressor of C9ORF72 (GGGGCC)n Repeat-Associated Non-AUG Translation.
Weiwei Cheng, Shaopeng Wang, Zhe Zhang, David W Morgens, Lindsey R Hayes, Soojin Lee, Bede Portz, Yongzhi Xie, Baotram V Nguyen, Michael S Haney,[...]. Neuron 2019
43
50

Enzymatic production of single-molecule FISH and RNA capture probes.
Imre Gaspar, Frank Wippich, Anne Ephrussi. RNA 2017
44
50

The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
818
50

Complete correction of murine Artemis immunodeficiency by lentiviral vector-mediated gene transfer.
Gustavo Mostoslavsky, Attila J Fabian, Sean Rooney, Frederick W Alt, Richard C Mulligan. Proc Natl Acad Sci U S A 2006
125
50

Control of mammalian gene expression by selective mRNA export.
Vihandha O Wickramasinghe, Ronald A Laskey. Nat Rev Mol Cell Biol 2015
114
50

Exporting RNA from the nucleus to the cytoplasm.
Alwin Köhler, Ed Hurt. Nat Rev Mol Cell Biol 2007
486
50

Unraveling the Role of RNA Mediated Toxicity of C9orf72 Repeats in C9-FTD/ALS.
Vijay Kumar, Gulam M Hasan, Md Imtaiyaz Hassan. Front Neurosci 2017
28
50

FISH-quant: automatic counting of transcripts in 3D FISH images.
Florian Mueller, Adrien Senecal, Katjana Tantale, Hervé Marie-Nelly, Nathalie Ly, Olivier Collin, Eugenia Basyuk, Edouard Bertrand, Xavier Darzacq, Christophe Zimmer. Nat Methods 2013
170
50

Dipeptide repeat proteins are present in the p62 positive inclusions in patients with frontotemporal lobar degeneration and motor neurone disease associated with expansions in C9ORF72.
David M A Mann, Sara Rollinson, Andrew Robinson, Janis Bennion Callister, Jennifer C Thompson, Julie S Snowden, Tania Gendron, Leonard Petrucelli, Masami Masuda-Suzukake, Masato Hasegawa,[...]. Acta Neuropathol Commun 2013
128
50

Retention of hexanucleotide repeat-containing intron in C9orf72 mRNA: implications for the pathogenesis of ALS/FTD.
Michael Niblock, Bradley N Smith, Youn-Bok Lee, Valentina Sardone, Simon Topp, Claire Troakes, Safa Al-Sarraj, Claire S Leblond, Patrick A Dion, Guy A Rouleau,[...]. Acta Neuropathol Commun 2016
31
50

A protein-tagging system for signal amplification in gene expression and fluorescence imaging.
Marvin E Tanenbaum, Luke A Gilbert, Lei S Qi, Jonathan S Weissman, Ronald D Vale. Cell 2014
672
50

RNA phase transitions in repeat expansion disorders.
Ankur Jain, Ronald D Vale. Nature 2017
306
50

RNA Splicing by the Spliceosome.
Max E Wilkinson, Clément Charenton, Kiyoshi Nagai. Annu Rev Biochem 2020
74
50

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.
Jakub O Westholm, Pedro Miura, Sara Olson, Sol Shenker, Brian Joseph, Piero Sanfilippo, Susan E Celniker, Brenton R Graveley, Eric C Lai. Cell Rep 2014
504
50

A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs.
Chuan Huang, Dongming Liang, Deirdre C Tatomer, Jeremy E Wilusz. Genes Dev 2018
117
50

A transgenic mouse for in vivo detection of endogenous labeled mRNA.
Timothée Lionnet, Kevin Czaplinski, Xavier Darzacq, Yaron Shav-Tal, Amber L Wells, Jeffrey A Chao, Hye Yoon Park, Valeria de Turris, Melissa Lopez-Jones, Robert H Singer. Nat Methods 2011
234
50

Dipeptide repeat protein pathology in C9ORF72 mutation cases: clinico-pathological correlations.
Ian R Mackenzie, Thomas Arzberger, Elisabeth Kremmer, Dirk Troost, Stefan Lorenzl, Kohji Mori, Shih-Ming Weng, Christian Haass, Hans A Kretzschmar, Dieter Edbauer,[...]. Acta Neuropathol 2013
226
50

Circular intronic long noncoding RNAs.
Yang Zhang, Xiao-Ou Zhang, Tian Chen, Jian-Feng Xiang, Qing-Fei Yin, Yu-Hang Xing, Shanshan Zhu, Li Yang, Ling-Ling Chen. Mol Cell 2013
50

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
50

Modeling ALS with motor neurons derived from human induced pluripotent stem cells.
Samuel Sances, Lucie I Bruijn, Siddharthan Chandran, Kevin Eggan, Ritchie Ho, Joseph R Klim, Matt R Livesey, Emily Lowry, Jeffrey D Macklis, David Rushton,[...]. Nat Neurosci 2016
135
50

Repeat expansion diseases.
Henry Paulson. Handb Clin Neurol 2018
106
50

RAN Translation Regulated by Muscleblind Proteins in Myotonic Dystrophy Type 2.
Tao Zu, John D Cleary, Yuanjing Liu, Monica Bañez-Coronel, Jodi L Bubenik, Fatma Ayhan, Tetsuo Ashizawa, Guangbin Xia, H Brent Clark, Anthony T Yachnis,[...]. Neuron 2017
52
50

G4C2 Repeat RNA Initiates a POM121-Mediated Reduction in Specific Nucleoporins in C9orf72 ALS/FTD.
Alyssa N Coyne, Benjamin L Zaepfel, Lindsey Hayes, Boris Fitchman, Yuval Salzberg, En-Ching Luo, Kelly Bowen, Hannah Trost, Stefan Aigner, Frank Rigo,[...]. Neuron 2020
15
50

The emerging role of circular RNAs in transcriptome regulation.
S Huang, B Yang, B J Chen, N Bliim, U Ueberham, T Arendt, M Janitz. Genomics 2017
99
50

The Role of Dipeptide Repeats in C9ORF72-Related ALS-FTD.
Brian D Freibaum, J Paul Taylor. Front Mol Neurosci 2017
111
50

Localization of ASH1 mRNA particles in living yeast.
E Bertrand, P Chartrand, M Schaefer, S M Shenoy, R H Singer, R M Long. Mol Cell 1998
50

CircRNAs in the brain.
Mor Hanan, Hermona Soreq, Sebastian Kadener. RNA Biol 2017
79
50

Rethinking Unconventional Translation in Neurodegeneration.
Fen-Biao Gao, Joel D Richter, Don W Cleveland. Cell 2017
30
50

SF2/ASF autoregulation involves multiple layers of post-transcriptional and translational control.
Shuying Sun, Zuo Zhang, Rahul Sinha, Rotem Karni, Adrian R Krainer. Nat Struct Mol Biol 2010
127
50

Translation imaging of single mRNAs in established cell lines and primary cultured neurons.
Malgorzata J Latallo, Nathan M Livingston, Bin Wu. Methods 2019
5
50

HaloTag: a novel protein labeling technology for cell imaging and protein analysis.
Georgyi V Los, Lance P Encell, Mark G McDougall, Danette D Hartzell, Natasha Karassina, Chad Zimprich, Monika G Wood, Randy Learish, Rachel Friedman Ohana, Marjeta Urh,[...]. ACS Chem Biol 2008
50

Imaging individual mRNA molecules using multiple singly labeled probes.
Arjun Raj, Patrick van den Bogaard, Scott A Rifkin, Alexander van Oudenaarden, Sanjay Tyagi. Nat Methods 2008
50

Real-time quantification of single RNA translation dynamics in living cells.
Tatsuya Morisaki, Kenneth Lyon, Keith F DeLuca, Jennifer G DeLuca, Brian P English, Zhengjian Zhang, Luke D Lavis, Jonathan B Grimm, Sarada Viswanathan, Loren L Looger,[...]. Science 2016
185
50

Structural basis for the coevolution of a viral RNA-protein complex.
Jeffrey A Chao, Yury Patskovsky, Steven C Almo, Robert H Singer. Nat Struct Mol Biol 2008
146
50

Translation of CircRNAs.
Nagarjuna Reddy Pamudurti, Osnat Bartok, Marvin Jens, Reut Ashwal-Fluss, Christin Stottmeister, Larissa Ruhe, Mor Hanan, Emanuel Wyler, Daniel Perez-Hernandez, Evelyn Ramberger,[...]. Mol Cell 2017
779
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.