A citation-based method for searching scientific literature

Cecilia Romaro, Fernando Araujo Najman, William W Lytton, Antonio C Roque, Salvador Dura-Bernal. Neural Comput 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons.
Henrik Lindén, Espen Hagen, Szymon Lęski, Eivind S Norheim, Klas H Pettersen, Gaute T Einevoll. Front Neuroinform 2014
79
100

Fully implicit parallel simulation of single neurons.
Michael L Hines, Henry Markram, Felix Schürmann. J Comput Neurosci 2008
33
100

Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.
Padraig Gleeson, Matteo Cantarelli, Boris Marin, Adrian Quintana, Matt Earnshaw, Sadra Sadeh, Eugenio Piasini, Justas Birgiolas, Robert C Cannon, N Alex Cayco-Gajic,[...]. Neuron 2019
25
100

Brain simulation as a cloud service: The Virtual Brain on EBRAINS.
Michael Schirner, Lia Domide, Dionysios Perdikis, Paul Triebkorn, Leon Stefanovski, Roopa Pai, Paula Prodan, Bogdan Valean, Jessica Palmer, Chloê Langford,[...]. Neuroimage 2022
3
100

The NEURON simulation environment.
M L Hines, N T Carnevale. Neural Comput 1997
100

Integration of neural architecture within a finite element framework for improved neuromusculoskeletal modeling.
Victoria L Volk, Landon D Hamilton, Donald R Hume, Kevin B Shelburne, Clare K Fitzpatrick. Sci Rep 2021
1
100

Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb.
Michele Migliore, Francesco Cavarretta, Michael L Hines, Gordon M Shepherd. Front Comput Neurosci 2014
19
100

Efficient computation of branched nerve equations.
M Hines. Int J Biomed Comput 1984
125
100

Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks.
Robert A McDougal, Cameron Conte, Lia Eggleston, Adam J H Newton, Hana Galijasevic. Front Neuroinform 2022
1
100

Parallel network simulations with NEURON.
M Migliore, C Cannia, W W Lytton, Henry Markram, M L Hines. J Comput Neurosci 2006
89
100


Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics.
Adam J H Newton, Robert A McDougal, Michael L Hines, William W Lytton. Front Neuroinform 2018
9
100

Brian 2, an intuitive and efficient neural simulator.
Marcel Stimberg, Romain Brette, Dan Fm Goodman. Elife 2019
80
100

Python in neuroscience.
Eilif Muller, James A Bednar, Markus Diesmann, Marc-Oliver Gewaltig, Michael Hines, Andrew P Davison. Front Neuroinform 2015
30
100

NeuroMorpho.Org: a central resource for neuronal morphologies.
Giorgio A Ascoli, Duncan E Donohue, Maryam Halavi. J Neurosci 2007
328
100

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience.
Werner Van Geit, Michael Gevaert, Giuseppe Chindemi, Christian Rössert, Jean-Denis Courcol, Eilif B Muller, Felix Schürmann, Idan Segev, Henry Markram. Front Neuroinform 2016
59
100

Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data.
Samuel A Neymotin, Dylan S Daniels, Blake Caldwell, Robert A McDougal, Nicholas T Carnevale, Mainak Jas, Christopher I Moore, Michael L Hines, Matti Hämäläinen, Stephanie R Jones. Elife 2020
21
100

The microcircuits of striatum in silico.
J J Johannes Hjorth, Alexander Kozlov, Ilaria Carannante, Johanna Frost Nylén, Robert Lindroos, Yvonne Johansson, Anna Tokarska, Matthijs C Dorst, Shreyas M Suryanarayana, Gilad Silberberg,[...]. Proc Natl Acad Sci U S A 2020
26
100

The Scientific Case for Brain Simulations.
Gaute T Einevoll, Alain Destexhe, Markus Diesmann, Sonja Grün, Viktor Jirsa, Marc de Kamps, Michele Migliore, Torbjørn V Ness, Hans E Plesser, Felix Schürmann. Neuron 2019
46
100

Reproducibility in Computational Neuroscience Models and Simulations.
Robert A McDougal, Anna S Bulanova, William W Lytton. IEEE Trans Biomed Eng 2016
27
100

Reconstruction and Simulation of Neocortical Microcircuitry.
Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever,[...]. Cell 2015
556
100


Training a spiking neuronal network model of visual-motor cortex to play a virtual racket-ball game using reinforcement learning.
Haroon Anwar, Simon Caby, Salvador Dura-Bernal, David D'Onofrio, Daniel Hasegan, Matt Deible, Sara Grunblatt, George L Chadderdon, Cliff C Kerr, Peter Lakatos,[...]. PLoS One 2022
1
100

State transitions through inhibitory interneurons in a cortical network model.
Alexander Bryson, Samuel F Berkovic, Steven Petrou, David B Grayden. PLoS Comput Biol 2021
1
100

Code Generation in Computational Neuroscience: A Review of Tools and Techniques.
Inga Blundell, Romain Brette, Thomas A Cleland, Thomas G Close, Daniel Coca, Andrew P Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F M Goodman,[...]. Front Neuroinform 2018
10
100


Extremely Scalable Spiking Neuronal Network Simulation Code: From Laptops to Exascale Computers.
Jakob Jordan, Tammo Ippen, Moritz Helias, Itaru Kitayama, Mitsuhisa Sato, Jun Igarashi, Markus Diesmann, Susanne Kunkel. Front Neuroinform 2018
36
100

SBML Level 3: an extensible format for the exchange and reuse of biological models.
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomáš Helikar,[...]. Mol Syst Biol 2020
56
100

Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform.
Subhashini Sivagnanam, Wyatt Gorman, Donald Doherty, Samuel A Neymotin, Stephan Fang, Hermine Hovhannisyan, William W Lytton, Salvador Dura-Bernal. PEARC20 (2020) 2020
2
100


Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Lealem Mulugeta, Andrew Drach, Ahmet Erdemir, C A Hunt, Marc Horner, Joy P Ku, Jerry G Myers, Rajanikanth Vadigepalli, William W Lytton. Front Neuroinform 2018
15
100

Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0.
Espen Hagen, Solveig Næss, Torbjørn V Ness, Gaute T Einevoll. Front Neuroinform 2018
30
100

Multiscale Computer Model of the Spinal Dorsal Horn Reveals Changes in Network Processing Associated with Chronic Pain.
Laura Medlock, Kazutaka Sekiguchi, Sungho Hong, Salvador Dura-Bernal, William W Lytton, Steven A Prescott. J Neurosci 2022
2
100


Software for Brain Network Simulations: A Comparative Study.
Ruben A Tikidji-Hamburyan, Vikram Narayana, Zeki Bozkus, Tarek A El-Ghazawi. Front Neuroinform 2017
15
100

Mapping the electrophysiological and morphological properties of CA1 pyramidal neurons along the longitudinal hippocampal axis.
Ruchi Malik, Kelly Ann Dougherty, Komal Parikh, Connor Byrne, Daniel Johnston. Hippocampus 2016
62
100


Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer.
Michael Hines, Sameer Kumar, Felix Schürmann. Front Comput Neurosci 2011
16
100


Simulation of networks of spiking neurons: a review of tools and strategies.
Romain Brette, Michelle Rudolph, Ted Carnevale, Michael Hines, David Beeman, James M Bower, Markus Diesmann, Abigail Morrison, Philip H Goodman, Frederick C Harris,[...]. J Comput Neurosci 2007
271
100

SciPy 1.0: fundamental algorithms for scientific computing in Python.
Pauli Virtanen, Ralf Gommers, Travis E Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright,[...]. Nat Methods 2020
100

Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective.
Ahmet Erdemir, Lealem Mulugeta, Joy P Ku, Andrew Drach, Marc Horner, Tina M Morrison, Grace C Y Peng, Rajanikanth Vadigepalli, William W Lytton, Jerry G Myers. J Transl Med 2020
18
100

NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
Salvador Dura-Bernal, Benjamin A Suter, Padraig Gleeson, Matteo Cantarelli, Adrian Quintana, Facundo Rodriguez, David J Kedziora, George L Chadderdon, Cliff C Kerr, Samuel A Neymotin,[...]. Elife 2019
32
100

Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex.
Yazan N Billeh, Binghuang Cai, Sergey L Gratiy, Kael Dai, Ramakrishnan Iyer, Nathan W Gouwens, Reza Abbasi-Asl, Xiaoxuan Jia, Joshua H Siegle, Shawn R Olsen,[...]. Neuron 2020
39
100

In silico voltage-sensitive dye imaging reveals the emergent dynamics of cortical populations.
Taylor H Newton, Michael W Reimann, Marwan Abdellah, Grigori Chevtchenko, Eilif B Muller, Henry Markram. Nat Commun 2021
3
100

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.
Robert A McDougal, Thomas M Morse, Ted Carnevale, Luis Marenco, Rixin Wang, Michele Migliore, Perry L Miller, Gordon M Shepherd, Michael L Hines. J Comput Neurosci 2017
87
100

Neuro4PD: An Initial Neurorobotics Model of Parkinson's Disease.
Jhielson M Pimentel, Renan C Moioli, Mariana F P de Araujo, Caetano M Ranieri, Roseli A F Romero, Frank Broz, Patricia A Vargas. Front Neurorobot 2021
2
100

CoreNEURON : An Optimized Compute Engine for the NEURON Simulator.
Pramod Kumbhar, Michael Hines, Jeremy Fouriaux, Aleksandr Ovcharenko, James King, Fabien Delalondre, Felix Schürmann. Front Neuroinform 2019
17
100

The Human Brain Project-Synergy between neuroscience, computing, informatics, and brain-inspired technologies.
Katrin Amunts, Alois C Knoll, Thomas Lippert, Cyriel M A Pennartz, Philippe Ryvlin, Alain Destexhe, Viktor K Jirsa, Egidio D'Angelo, Jan G Bjaalie. PLoS Biol 2019
15
100

NEURON and Python.
Michael L Hines, Andrew P Davison, Eilif Muller. Front Neuroinform 2009
182
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.