A citation-based method for searching scientific literature

Jorge Urresti, Pan Zhang, Patricia Moran-Losada, Nam-Kyung Yu, Priscilla D Negraes, Cleber A Trujillo, Danny Antaki, Megha Amar, Kevin Chau, Akula Bala Pramod, Jolene Diedrich, Leon Tejwani, Sarah Romero, Jonathan Sebat, John R Yates Iii, Alysson R Muotri, Lilia M Iakoucheva. Mol Psychiatry 2021
Times Cited: 2







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Spatiotemporal 16p11.2 protein network implicates cortical late mid-fetal brain development and KCTD13-Cul3-RhoA pathway in psychiatric diseases.
Guan Ning Lin, Roser Corominas, Irma Lemmens, Xinping Yang, Jan Tavernier, David E Hill, Marc Vidal, Jonathan Sebat, Lilia M Iakoucheva. Neuron 2015
77
100

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Brian J O'Roak, Laura Vives, Santhosh Girirajan, Emre Karakoc, Niklas Krumm, Bradley P Coe, Roie Levy, Arthur Ko, Choli Lee, Joshua D Smith,[...]. Nature 2012
100

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism.
Jennifer C Darnell, Sarah J Van Driesche, Chaolin Zhang, Ka Ying Sharon Hung, Aldo Mele, Claire E Fraser, Elizabeth F Stone, Cynthia Chen, John J Fak, Sung Wook Chi,[...]. Cell 2011
100

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
100

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.
A Jeremy Willsey, Stephan J Sanders, Mingfeng Li, Shan Dong, Andrew T Tebbenkamp, Rebecca A Muhle, Steven K Reilly, Leon Lin, Sofia Fertuzinhos, Jeremy A Miller,[...]. Cell 2013
483
100

Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism.
Neelroop N Parikshak, Rui Luo, Alice Zhang, Hyejung Won, Jennifer K Lowe, Vijayendran Chandran, Steve Horvath, Daniel H Geschwind. Cell 2013
557
100

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
342
100

A framework for the interpretation of de novo mutation in human disease.
Kaitlin E Samocha, Elise B Robinson, Stephan J Sanders, Christine Stevens, Aniko Sabo, Lauren M McGrath, Jack A Kosmicki, Karola Rehnström, Swapan Mallick, Andrew Kirby,[...]. Nat Genet 2014
516
100

SynaptomeDB: an ontology-based knowledgebase for synaptic genes.
Mehdi Pirooznia, Tao Wang, Dimitrios Avramopoulos, David Valle, Gareth Thomas, Richard L Huganir, Fernando S Goes, James B Potash, Peter P Zandi. Bioinformatics 2012
65
100

MR technology for biological studies in mice.
Brian J Nieman, Jonathan Bishop, Jun Dazai, Nicholas A Bock, Jason P Lerch, Akiva Feintuch, X Josette Chen, John G Sled, R Mark Henkelman. NMR Biomed 2007
31
50

Germline Chd8 haploinsufficiency alters brain development in mouse.
Andrea L Gompers, Linda Su-Feher, Jacob Ellegood, Nycole A Copping, M Asrafuzzaman Riyadh, Tyler W Stradleigh, Michael C Pride, Melanie D Schaffler, A Ayanna Wade, Rinaldo Catta-Preta,[...]. Nat Neurosci 2017
101
50


The Autism Protein Ube3A/E6AP Remodels Neuronal Dendritic Arborization via Caspase-Dependent Microtubule Destabilization.
Natasha Khatri, James P Gilbert, Yuda Huo, Roozhin Sharaflari, Michael Nee, Hui Qiao, Heng-Ye Man. J Neurosci 2018
23
50

Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.
Ye Zhang, Steven A Sloan, Laura E Clarke, Christine Caneda, Colton A Plaza, Paul D Blumenthal, Hannes Vogel, Gary K Steinberg, Michael S B Edwards, Gordon Li,[...]. Neuron 2016
802
50

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
50

The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
50

Extracting Accurate Precursor Information for Tandem Mass Spectra by RawConverter.
Lin He, Jolene Diedrich, Yen-Yin Chu, John R Yates. Anal Chem 2015
123
50

Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development.
Cleber A Trujillo, Richard Gao, Priscilla D Negraes, Jing Gu, Justin Buchanan, Sebastian Preissl, Allen Wang, Wei Wu, Gabriel G Haddad, Isaac A Chaim,[...]. Cell Stem Cell 2019
155
50

A quantitative analysis software tool for mass spectrometry-based proteomics.
Sung Kyu Park, John D Venable, Tao Xu, John R Yates. Nat Methods 2008
294
50

A radial glia-specific role of RhoA in double cortex formation.
Silvia Cappello, Christian R J Böhringer, Matteo Bergami, Karl-Klaus Conzelmann, Alexander Ghanem, Giulio Srubek Tomassy, Paola Arlotta, Marco Mainardi, Manuela Allegra, Matteo Caleo,[...]. Neuron 2012
110
50

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.
Ye Zhang, Kenian Chen, Steven A Sloan, Mariko L Bennett, Anja R Scholze, Sean O'Keeffe, Hemali P Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch,[...]. J Neurosci 2014
50

MRI to Assess Neurological Function.
Brian J Nieman, Matthijs C van Eede, Shoshana Spring, Jun Dazai, R Mark Henkelman, Jason P Lerch. Curr Protoc Mouse Biol 2018
15
50

Genetic effects on cerebellar structure across mouse models of autism using a magnetic resonance imaging atlas.
Patrick E Steadman, Jacob Ellegood, Kamila U Szulc, Daniel H Turnbull, Alexandra L Joyner, R Mark Henkelman, Jason P Lerch. Autism Res 2014
68
50


OTUD7A Regulates Neurodevelopmental Phenotypes in the 15q13.3 Microdeletion Syndrome.
Mohammed Uddin, Brianna K Unda, Vickie Kwan, Nicholas T Holzapfel, Sean H White, Leon Chalil, Marc Woodbury-Smith, Karen S Ho, Erin Harward, Nadeem Murtaza,[...]. Am J Hum Genet 2018
33
50


Single-cell transcriptomic analysis of mouse neocortical development.
Lipin Loo, Jeremy M Simon, Lei Xing, Eric S McCoy, Jesse K Niehaus, Jiami Guo, E S Anton, Mark J Zylka. Nat Commun 2019
70
50

Regulation of cerebral cortex development by Rho GTPases: insights from in vivo studies.
Roberta Azzarelli, Thomas Kerloch, Emilie Pacary. Front Cell Neurosci 2015
25
50

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.
Arpiar Saunders, Evan Z Macosko, Alec Wysoker, Melissa Goldman, Fenna M Krienen, Heather de Rivera, Elizabeth Bien, Matthew Baum, Laura Bortolin, Shuyu Wang,[...]. Cell 2018
394
50

Altered TAOK2 activity causes autism-related neurodevelopmental and cognitive abnormalities through RhoA signaling.
Melanie Richter, Nadeem Murtaza, Robin Scharrenberg, Sean H White, Ole Johanns, Susan Walker, Ryan K C Yuen, Birgit Schwanke, Bianca Bedürftig, Melad Henis,[...]. Mol Psychiatry 2019
47
50

Behavioral, circuitry, and molecular aberrations by region-specific deficiency of the high-risk autism gene Cul3.
Maximiliano Rapanelli, Tao Tan, Wei Wang, Xue Wang, Zi-Jun Wang, Ping Zhong, Luciana Frick, Luye Qin, Kaijie Ma, Jun Qu,[...]. Mol Psychiatry 2021
15
50

ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.
T Xu, S K Park, J D Venable, J A Wohlschlegel, J K Diedrich, D Cociorva, B Lu, L Liao, J Hewel, X Han,[...]. J Proteomics 2015
224
50

Cullin mediates degradation of RhoA through evolutionarily conserved BTB adaptors to control actin cytoskeleton structure and cell movement.
Yuezhou Chen, Zhenxiao Yang, Min Meng, Yue Zhao, Na Dong, Hongming Yan, Liping Liu, Mingxiao Ding, H Benjamin Peng, Feng Shao. Mol Cell 2009
188
50

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.
Jüri Reimand, Meelis Kull, Hedi Peterson, Jaanus Hansen, Jaak Vilo. Nucleic Acids Res 2007
597
50

Intermediate filament accumulation can stabilize microtubules in Caenorhabditis elegans motor neurons.
Naina Kurup, Yunbo Li, Alexandr Goncharov, Yishi Jin. Proc Natl Acad Sci U S A 2018
12
50

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
Stephan J Sanders, Xin He, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Kaitlin E Samocha, A Ercument Cicek, Michael T Murtha, Vanessa H Bal, Somer L Bishop, Shan Dong,[...]. Neuron 2015
614
50

Intra-axonal translation of RhoA promotes axon growth inhibition by CSPG.
Breset A Walker, Sheng-Jian Ji, Samie R Jaffrey. J Neurosci 2012
42
50

Cullin-3 targets cyclin E for ubiquitination and controls S phase in mammalian cells.
J D Singer, M Gurian-West, B Clurman, J M Roberts. Genes Dev 1999
315
50


Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
50

MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes.
Graeme C McAlister, David P Nusinow, Mark P Jedrychowski, Martin Wühr, Edward L Huttlin, Brian K Erickson, Ramin Rad, Wilhelm Haas, Steven P Gygi. Anal Chem 2014
559
50

Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
50

Normalization of RNA-seq data using factor analysis of control genes or samples.
Davide Risso, John Ngai, Terence P Speed, Sandrine Dudoit. Nat Biotechnol 2014
675
50


Setd5 haploinsufficiency alters neuronal network connectivity and leads to autistic-like behaviors in mice.
Spencer M Moore, Jason S Seidman, Jacob Ellegood, Richard Gao, Alex Savchenko, Ty D Troutman, Yohei Abe, Josh Stender, Daehoon Lee, Sicong Wang,[...]. Transl Psychiatry 2019
8
50

GC-content normalization for RNA-Seq data.
Davide Risso, Katja Schwartz, Gavin Sherlock, Sandrine Dudoit. BMC Bioinformatics 2011
355
50

A general framework for weighted gene co-expression network analysis.
Bin Zhang, Steve Horvath. Stat Appl Genet Mol Biol 2005
50

CUL3 Deficiency Causes Social Deficits and Anxiety-like Behaviors by Impairing Excitation-Inhibition Balance through the Promotion of Cap-Dependent Translation.
Zhaoqi Dong, Wenbing Chen, Chao Chen, Hongsheng Wang, Wanpeng Cui, Zhibing Tan, Heath Robinson, Nannan Gao, Bin Luo, Lei Zhang,[...]. Neuron 2020
20
50


The 16p11.2 deletion mouse model of autism exhibits altered cortical progenitor proliferation and brain cytoarchitecture linked to the ERK MAPK pathway.
Joanna Pucilowska, Joseph Vithayathil, Emmanuel J Tavares, Caitlin Kelly, J Colleen Karlo, Gary E Landreth. J Neurosci 2015
81
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.