Arum Kim, Gang Greg Wang. Biochim Biophys Acta Gene Regul Mech 2021
Times Cited: 2
Times Cited: 2
Times Cited
Times Co-cited
Similarity
DROPA: DRIP-seq optimized peak annotator.
Marco Russo, Bruno De Lucca, Tiziano Flati, Silvia Gioiosa, Giovanni Chillemi, Giovanni Capranico. BMC Bioinformatics 2019
Marco Russo, Bruno De Lucca, Tiziano Flati, Silvia Gioiosa, Giovanni Chillemi, Giovanni Capranico. BMC Bioinformatics 2019
50
G-quadruplexes in mRNA: A key structure for biological function.
Takuto Kamura, Yousuke Katsuda, Yusuke Kitamura, Toshihiro Ihara. Biochem Biophys Res Commun 2020
Takuto Kamura, Yousuke Katsuda, Yusuke Kitamura, Toshihiro Ihara. Biochem Biophys Res Commun 2020
50
G clustering is important for the initiation of transcription-induced R-loops in vitro, whereas high G density without clustering is sufficient thereafter.
Deepankar Roy, Michael R Lieber. Mol Cell Biol 2009
Deepankar Roy, Michael R Lieber. Mol Cell Biol 2009
50
The UCSC Genome Browser database: 2019 update.
Maximilian Haeussler, Ann S Zweig, Cath Tyner, Matthew L Speir, Kate R Rosenbloom, Brian J Raney, Christopher M Lee, Brian T Lee, Angie S Hinrichs, Jairo Navarro Gonzalez,[...]. Nucleic Acids Res 2019
Maximilian Haeussler, Ann S Zweig, Cath Tyner, Matthew L Speir, Kate R Rosenbloom, Brian J Raney, Christopher M Lee, Brian T Lee, Angie S Hinrichs, Jairo Navarro Gonzalez,[...]. Nucleic Acids Res 2019
50
A guide to computational methods for G-quadruplex prediction.
Emilia Puig Lombardi, Arturo Londoño-Vallejo. Nucleic Acids Res 2020
Emilia Puig Lombardi, Arturo Londoño-Vallejo. Nucleic Acids Res 2020
50
Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.
J D WATSON, F H CRICK. Nature 1953
J D WATSON, F H CRICK. Nature 1953
50
R-Loop Identification and Profiling in Plants.
Pengyue Zhang, Yilong Feng, Hairong Wei, Wenli Zhang. Trends Plant Sci 2019
Pengyue Zhang, Yilong Feng, Hairong Wei, Wenli Zhang. Trends Plant Sci 2019
50
G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
50
Formation and thermodynamic stability of intermolecular (R*R*Y) DNA triplex in GAA/TTC repeats associated with Freidreich's ataxia.
Aklank Jain, Moganty R Rajeswari, Faizan Ahmed. J Biomol Struct Dyn 2002
Aklank Jain, Moganty R Rajeswari, Faizan Ahmed. J Biomol Struct Dyn 2002
50
Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool).
R Z Cer, K H Bruce, D E Donohue, N A Temiz, U S Mudunuri, M Yi, N Volfovsky, A Bacolla, B T Luke, J R Collins,[...]. Curr Protoc Hum Genet 2012
R Z Cer, K H Bruce, D E Donohue, N A Temiz, U S Mudunuri, M Yi, N Volfovsky, A Bacolla, B T Luke, J R Collins,[...]. Curr Protoc Hum Genet 2012
50
RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.
Julie Nadel, Rodoniki Athanasiadou, Christophe Lemetre, N Ari Wijetunga, Pilib Ó Broin, Hanae Sato, Zhengdong Zhang, Jeffrey Jeddeloh, Cristina Montagna, Aaron Golden,[...]. Epigenetics Chromatin 2015
Julie Nadel, Rodoniki Athanasiadou, Christophe Lemetre, N Ari Wijetunga, Pilib Ó Broin, Hanae Sato, Zhengdong Zhang, Jeffrey Jeddeloh, Cristina Montagna, Aaron Golden,[...]. Epigenetics Chromatin 2015
50
QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.
Piroon Jenjaroenpun, Thidathip Wongsurawat, Surya Pavan Yenamandra, Vladimir A Kuznetsov. Nucleic Acids Res 2015
Piroon Jenjaroenpun, Thidathip Wongsurawat, Surya Pavan Yenamandra, Vladimir A Kuznetsov. Nucleic Acids Res 2015
50
Timeline: Z-DNA: the long road to biological function.
Alexander Rich, Shuguang Zhang. Nat Rev Genet 2003
Alexander Rich, Shuguang Zhang. Nat Rev Genet 2003
50
G-quadruplex structures are stable and detectable in human genomic DNA.
Enid Yi Ni Lam, Dario Beraldi, David Tannahill, Shankar Balasubramanian. Nat Commun 2013
Enid Yi Ni Lam, Dario Beraldi, David Tannahill, Shankar Balasubramanian. Nat Commun 2013
50
The dark side of RNA:DNA hybrids.
Alessandra Brambati, Luca Zardoni, Eleonora Nardini, Achille Pellicioli, Giordano Liberi. Mutat Res Rev Mutat Res 2020
Alessandra Brambati, Luca Zardoni, Eleonora Nardini, Achille Pellicioli, Giordano Liberi. Mutat Res Rev Mutat Res 2020
50
DNA transitions induced by binding of PARP-1 to cruciform structures in supercoiled plasmids.
Sergey Chasovskikh, Alexandre Dimtchev, Mark Smulson, Anatoly Dritschilo. Cytometry A 2005
Sergey Chasovskikh, Alexandre Dimtchev, Mark Smulson, Anatoly Dritschilo. Cytometry A 2005
50
R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
50
Relationship among DNA double-strand break (DSB), DSB repair, and transcription prevents genome instability and cancer.
Ayako Ui, Natsuko Chiba, Akira Yasui. Cancer Sci 2020
Ayako Ui, Natsuko Chiba, Akira Yasui. Cancer Sci 2020
50
Human genomic Z-DNA segments probed by the Z alpha domain of ADAR1.
Heng Li, Jie Xiao, Jinming Li, Le Lu, Shu Feng, Peter Dröge. Nucleic Acids Res 2009
Heng Li, Jie Xiao, Jinming Li, Le Lu, Shu Feng, Peter Dröge. Nucleic Acids Res 2009
50
High-resolution, genome-wide mapping of positive supercoiling in chromosomes.
Monica S Guo, Ryo Kawamura, Megan L Littlehale, John F Marko, Michael T Laub. Elife 2021
Monica S Guo, Ryo Kawamura, Megan L Littlehale, John F Marko, Michael T Laub. Elife 2021
50
R-loop structure: the formation and the effects on genomic stability.
Xuefeng Pan, Nan Jiang, Xifang Chen, Xiaohong Zhou, Liang Ding, Fei Duan. Yi Chuan 2014
Xuefeng Pan, Nan Jiang, Xifang Chen, Xiaohong Zhou, Liang Ding, Fei Duan. Yi Chuan 2014
50
Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
50
High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing.
Lionel A Sanz, Frédéric Chédin. Nat Protoc 2019
Lionel A Sanz, Frédéric Chédin. Nat Protoc 2019
50
DNA complexes containing joined triplex and duplex motifs: melting behavior of intramolecular and bimolecular complexes with similar sequences.
Hui-Ting Lee, Irine Khutsishvili, Luis A Marky. J Phys Chem B 2010
Hui-Ting Lee, Irine Khutsishvili, Luis A Marky. J Phys Chem B 2010
50
Palindrome analyser - A new web-based server for predicting and evaluating inverted repeats in nucleotide sequences.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Lucia Hároníková, Jan Coufal, Jiří Št'astný. Biochem Biophys Res Commun 2016
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Lucia Hároníková, Jan Coufal, Jiří Št'astný. Biochem Biophys Res Commun 2016
50
Mapping R-Loops and RNA:DNA Hybrids with S9.6-Based Immunoprecipitation Methods.
Lionel A Sanz, Daisy Castillo-Guzman, Frédéric Chédin. J Vis Exp 2021
Lionel A Sanz, Daisy Castillo-Guzman, Frédéric Chédin. J Vis Exp 2021
50
Genome-wide R-loop Landscapes during Cell Differentiation and Reprogramming.
Pengze Yan, Zunpeng Liu, Moshi Song, Zeming Wu, Wei Xu, Kuan Li, Qianzhao Ji, Si Wang, Xiaoqian Liu, Kaowen Yan,[...]. Cell Rep 2020
Pengze Yan, Zunpeng Liu, Moshi Song, Zeming Wu, Wei Xu, Kuan Li, Qianzhao Ji, Si Wang, Xiaoqian Liu, Kaowen Yan,[...]. Cell Rep 2020
50
Cruciform structures are a common DNA feature important for regulating biological processes.
Václav Brázda, Rob C Laister, Eva B Jagelská, Cheryl Arrowsmith. BMC Mol Biol 2011
Václav Brázda, Rob C Laister, Eva B Jagelská, Cheryl Arrowsmith. BMC Mol Biol 2011
50
A chromatin remodelling complex involved in transcription and DNA processing.
X Shen, G Mizuguchi, A Hamiche, C Wu. Nature 2000
X Shen, G Mizuguchi, A Hamiche, C Wu. Nature 2000
50
50
G4Hunter web application: a web server for G-quadruplex prediction.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Martin Bartas, Miroslav Fojta, Jiří Šťastný, Jean-Louis Mergny. Bioinformatics 2019
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Martin Bartas, Miroslav Fojta, Jiří Šťastný, Jean-Louis Mergny. Bioinformatics 2019
50
A Structural Bisulfite Assay to Identify DNA Cruciforms.
Matthew Gentry, Lars Hennig. Mol Plant 2016
Matthew Gentry, Lars Hennig. Mol Plant 2016
50
The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria.
Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka. Molecules 2019
Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka. Molecules 2019
50
Transcription-dependent DNA double-strand breaks and human disease.
Agnese Cristini, Natalia Gromak, Olivier Sordet. Mol Cell Oncol 2020
Agnese Cristini, Natalia Gromak, Olivier Sordet. Mol Cell Oncol 2020
50
Genomic profiling of native R loops with a DNA-RNA hybrid recognition sensor.
Kang Wang, Honghong Wang, Conghui Li, Zhinang Yin, Ruijing Xiao, Qiuzi Li, Ying Xiang, Wen Wang, Jian Huang, Liang Chen,[...]. Sci Adv 2021
Kang Wang, Honghong Wang, Conghui Li, Zhinang Yin, Ruijing Xiao, Qiuzi Li, Ying Xiang, Wen Wang, Jian Huang, Liang Chen,[...]. Sci Adv 2021
50
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.
Seong Wook Yang, Hong-Ying Chen, Jing Yang, Satoru Machida, Nam-Hai Chua, Y Adam Yuan. Structure 2010
Seong Wook Yang, Hong-Ying Chen, Jing Yang, Satoru Machida, Nam-Hai Chua, Y Adam Yuan. Structure 2010
50
Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome.
Charles Addo-Quaye, Jo Ann Snyder, Yong Bum Park, Yong-Fang Li, Ramanjulu Sunkar, Michael J Axtell. RNA 2009
Charles Addo-Quaye, Jo Ann Snyder, Yong Bum Park, Yong-Fang Li, Ramanjulu Sunkar, Michael J Axtell. RNA 2009
50
Organismal benefits of transcription speed control at gene boundaries.
Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Indranil Malik, Axel Thieffry, Peter Brodersen, Albin Sandelin, Craig D Kaplan, Sebastian Marquardt. EMBO Rep 2020
Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Indranil Malik, Axel Thieffry, Peter Brodersen, Albin Sandelin, Craig D Kaplan, Sebastian Marquardt. EMBO Rep 2020
50
Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice.
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su,[...]. Genome Res 2019
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su,[...]. Genome Res 2019
50
ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis.
Wei Yuan, Jincong Zhou, Jinjin Tong, Wanqing Zhuo, Lishuan Wang, Yan Li, Qianwen Sun, Weiqiang Qian. Sci Adv 2019
Wei Yuan, Jincong Zhou, Jinjin Tong, Wanqing Zhuo, Lishuan Wang, Yan Li, Qianwen Sun, Weiqiang Qian. Sci Adv 2019
50
Transcription and processing of primary microRNAs are coupled by Elongator complex in Arabidopsis.
Xiaofeng Fang, Yuwei Cui, Yaoxi Li, Yijun Qi. Nat Plants 2015
Xiaofeng Fang, Yuwei Cui, Yaoxi Li, Yijun Qi. Nat Plants 2015
50
Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
50
RNase H1 Cooperates with DNA Gyrases to Restrict R-Loops and Maintain Genome Integrity in Arabidopsis Chloroplasts.
Zhuo Yang, Quancan Hou, Lingling Cheng, Wei Xu, Yantao Hong, Shuai Li, Qianwen Sun. Plant Cell 2017
Zhuo Yang, Quancan Hou, Lingling Cheng, Wei Xu, Yantao Hong, Shuai Li, Qianwen Sun. Plant Cell 2017
50
R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
50
Writing a wrong: Coupled RNA polymerase II transcription and RNA quality control.
Sarah A Peck, Katlyn D Hughes, Jose F Victorino, Amber L Mosley. Wiley Interdiscip Rev RNA 2019
Sarah A Peck, Katlyn D Hughes, Jose F Victorino, Amber L Mosley. Wiley Interdiscip Rev RNA 2019
50
Co-Transcriptional RNA Processing in Plants: Exploring from the Perspective of Polyadenylation.
Jing Yang, Ying Cao, Ligeng Ma. Int J Mol Sci 2021
Jing Yang, Ying Cao, Ligeng Ma. Int J Mol Sci 2021
50
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.
Michael S Campbell, MeiYee Law, Carson Holt, Joshua C Stein, Gaurav D Moghe, David E Hufnagel, Jikai Lei, Rujira Achawanantakun, Dian Jiao, Carolyn J Lawrence,[...]. Plant Physiol 2014
Michael S Campbell, MeiYee Law, Carson Holt, Joshua C Stein, Gaurav D Moghe, David E Hufnagel, Jikai Lei, Rujira Achawanantakun, Dian Jiao, Carolyn J Lawrence,[...]. Plant Physiol 2014
50
Expression of Arabidopsis MIRNA genes.
Zhixin Xie, Edwards Allen, Noah Fahlgren, Adam Calamar, Scott A Givan, James C Carrington. Plant Physiol 2005
Zhixin Xie, Edwards Allen, Noah Fahlgren, Adam Calamar, Scott A Givan, James C Carrington. Plant Physiol 2005
50
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.