A citation-based method for searching scientific literature

Miran Kim, Arif Ozgun Harmanci, Jean-Philippe Bossuat, Sergiu Carpov, Jung Hee Cheon, Ilaria Chillotti, Wonhee Cho, David Froelicher, Nicolas Gama, Mariya Georgieva, Seungwan Hong, Jean-Pierre Hubaux, Duhyeong Kim, Kristin Lauter, Yiping Ma, Lucila Ohno-Machado, Heidi Sofia, Yongha Son, Yongsoo Song, Juan Troncoso-Pastoriza, Xiaoqian Jiang. Cell Syst 2021
Times Cited: 10







List of co-cited articles
30 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Sketching algorithms for genomic data analysis and querying in a secure enclave.
Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M Oguzhan Kulekci, David P Woodruff, S Cenk Sahinalp. Nat Methods 2020
10
40

Next-generation genotype imputation service and methods.
Sayantan Das, Lukas Forer, Sebastian Schönherr, Carlo Sidore, Adam E Locke, Alan Kwong, Scott I Vrieze, Emily Y Chew, Shawn Levy, Matt McGue,[...]. Nat Genet 2016
40


Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program.
Daniel Taliun, Daniel N Harris, Michael D Kessler, Jedidiah Carlson, Zachary A Szpiech, Raul Torres, Sarah A Gagliano Taliun, André Corvelo, Stephanie M Gogarten, Hyun Min Kang,[...]. Nature 2021
345
30

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
30

Realizing private and practical pharmacological collaboration.
Brian Hie, Hyunghoon Cho, Bonnie Berger. Science 2018
22
30

Secure genome-wide association analysis using multiparty computation.
Hyunghoon Cho, David J Wu, Bonnie Berger. Nat Biotechnol 2018
42
30

Privacy-preserving genotype imputation in a trusted execution environment.
Natnatee Dokmai, Can Kockan, Kaiyuan Zhu, XiaoFeng Wang, S Cenk Sahinalp, Hyunghoon Cho. Cell Syst 2021
4
75


Privacy-preserving genotype imputation with fully homomorphic encryption.
Gamze Gürsoy, Eduardo Chielle, Charlotte M Brannon, Michail Maniatakos, Mark Gerstein. Cell Syst 2022
3
100

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.
Yun Li, Cristen J Willer, Jun Ding, Paul Scheet, Gonçalo R Abecasis. Genet Epidemiol 2010
20

A second generation human haplotype map of over 3.1 million SNPs.
Kelly A Frazer, Dennis G Ballinger, David R Cox, David A Hinds, Laura L Stuve, Richard A Gibbs, John W Belmont, Andrew Boudreau, Paul Hardenbol, Suzanne M Leal,[...]. Nature 2007
20

UK biobank: an open access resource for identifying the causes of a wide range of complex diseases of middle and old age.
Cathie Sudlow, John Gallacher, Naomi Allen, Valerie Beral, Paul Burton, John Danesh, Paul Downey, Paul Elliott, Jane Green, Martin Landray,[...]. PLoS Med 2015
20

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing.
Bryan Howie, Christian Fuchsberger, Matthew Stephens, Jonathan Marchini, Gonçalo R Abecasis. Nat Genet 2012
20

The real cost of sequencing: higher than you think!
Andrea Sboner, Xinmeng Jasmine Mu, Dov Greenbaum, Raymond K Auerbach, Mark B Gerstein. Genome Biol 2011
196
20

Semi-Parallel logistic regression for GWAS on encrypted data.
Miran Kim, Yongsoo Song, Baiyu Li, Daniele Micciancio. BMC Med Genomics 2020
5
40

Logistic regression model training based on the approximate homomorphic encryption.
Andrey Kim, Yongsoo Song, Miran Kim, Keewoo Lee, Jung Hee Cheon. BMC Med Genomics 2018
12
20

Privacy challenges and research opportunities for genomic data sharing.
Luca Bonomi, Yingxiang Huang, Lucila Ohno-Machado. Nat Genet 2020
30
20

Identifying personal genomes by surname inference.
Melissa Gymrek, Amy L McGuire, David Golan, Eran Halperin, Yaniv Erlich. Science 2013
493
20

Identification of individuals by trait prediction using whole-genome sequencing data.
Christoph Lippert, Riccardo Sabatini, M Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arikan, Alena Harley, Axel Bernal, Peter Garst, Victor Lavrenko,[...]. Proc Natl Acad Sci U S A 2017
60
20

Identity inference of genomic data using long-range familial searches.
Yaniv Erlich, Tal Shor, Itsik Pe'er, Shai Carmi. Science 2018
104
20

Population-specific genotype imputations using minimac or IMPUTE2.
Elisabeth M van Leeuwen, Alexandros Kanterakis, Patrick Deelen, Mathijs V Kattenberg, P Eline Slagboom, Paul I W de Bakker, Cisca Wijmenga, Morris A Swertz, Dorret I Boomsma, Cornelia M van Duijn,[...]. Nat Protoc 2015
56
20

Using blockchain to log genome dataset access: efficient storage and query.
Gamze Gürsoy, Robert Bjornson, Molly E Green, Mark Gerstein. BMC Med Genomics 2020
8
25

A One-Penny Imputed Genome from Next-Generation Reference Panels.
Brian L Browning, Ying Zhou, Sharon R Browning. Am J Hum Genet 2018
452
20

Data Sanitization to Reduce Private Information Leakage from Functional Genomics.
Gamze Gürsoy, Prashant Emani, Charlotte M Brannon, Otto A Jolanki, Arif Harmanci, J Seth Strattan, J Michael Cherry, Andrew D Miranker, Mark Gerstein. Cell 2020
11
20

Privacy Risks from Genomic Data-Sharing Beacons.
Suyash S Shringarpure, Carlos D Bustamante. Am J Hum Genet 2015
86
20

Routes for breaching and protecting genetic privacy.
Yaniv Erlich, Arvind Narayanan. Nat Rev Genet 2014
156
20

Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track.
Tsung-Ting Kuo, Tyler Bath, Shuaicheng Ma, Nicholas Pattengale, Meng Yang, Yang Cao, Corey M Hudson, Jihoon Kim, Kai Post, Li Xiong,[...]. Int J Med Inform 2021
5
40

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.
Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Tyler Bath, Diyue Bu, Lei Wang, Arif Harmanci, Shaojie Zhang, Degui Zhi,[...]. BMC Med Genomics 2020
10
20

Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption.
David Froelicher, Juan R Troncoso-Pastoriza, Jean Louis Raisaro, Michel A Cuendet, Joao Sa Sousa, Hyunghoon Cho, Bonnie Berger, Jacques Fellay, Jean-Pierre Hubaux. Nat Commun 2021
10
20

htsget: a protocol for securely streaming genomic data.
Jerome Kelleher, Mike Lin, C H Albach, Ewan Birney, Robert Davies, Marina Gourtovaia, David Glazer, Cristina Y Gonzalez, David K Jackson, Aaron Kemp,[...]. Bioinformatics 2019
12
10

A privacy-preserving solution for compressed storage and selective retrieval of genomic data.
Zhicong Huang, Erman Ayday, Huang Lin, Raeka S Aiyar, Adam Molyneaux, Zhenyu Xu, Jacques Fellay, Lars M Steinmetz, Jean-Pierre Hubaux. Genome Res 2016
14
10

Cryfa: a secure encryption tool for genomic data.
Morteza Hosseini, Diogo Pratas, Armando J Pinho. Bioinformatics 2019
8
12

PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension.
Feng Chen, Chenghong Wang, Wenrui Dai, Xiaoqian Jiang, Noman Mohammed, Md Momin Al Aziz, Md Nazmus Sadat, Cenk Sahinalp, Kristin Lauter, Shuang Wang. BMC Med Genomics 2017
17
10

A linear complexity phasing method for thousands of genomes.
Olivier Delaneau, Jonathan Marchini, Jean-François Zagury. Nat Methods 2011
10


Improved whole-chromosome phasing for disease and population genetic studies.
Olivier Delaneau, Jean-Francois Zagury, Jonathan Marchini. Nat Methods 2013
845
10

Efficient multipoint linkage analysis through reduction of inheritance space.
K Markianos, M J Daly, L Kruglyak. Am J Hum Genet 2001
101
10

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS.
Feng Chen, Shuang Wang, Xiaoqian Jiang, Sijie Ding, Yao Lu, Jihoon Kim, S Cenk Sahinalp, Chisato Shimizu, Jane C Burns, Victoria J Wright,[...]. Bioinformatics 2017
42
10

On genomic repeats and reproducibility.
Can Firtina, Can Alkan. Bioinformatics 2016
20
10

Fast and efficient QTL mapper for thousands of molecular phenotypes.
Halit Ongen, Alfonso Buil, Andrew Anand Brown, Emmanouil T Dermitzakis, Olivier Delaneau. Bioinformatics 2016
201
10

A reference panel of 64,976 haplotypes for genotype imputation.
Shane McCarthy, Sayantan Das, Warren Kretzschmar, Olivier Delaneau, Andrew R Wood, Alexander Teumer, Hyun Min Kang, Christian Fuchsberger, Petr Danecek, Kevin Sharp,[...]. Nat Genet 2016
10

minimac2: faster genotype imputation.
Christian Fuchsberger, Gonçalo R Abecasis, David A Hinds. Bioinformatics 2015
256
10

A new multipoint method for genome-wide association studies by imputation of genotypes.
Jonathan Marchini, Bryan Howie, Simon Myers, Gil McVean, Peter Donnelly. Nat Genet 2007
10

Revealing the architecture of gene regulation: the promise of eQTL studies.
Yoav Gilad, Scott A Rifkin, Jonathan K Pritchard. Trends Genet 2008
322
10

Merlin--rapid analysis of dense genetic maps using sparse gene flow trees.
Gonçalo R Abecasis, Stacey S Cherny, William O Cookson, Lon R Cardon. Nat Genet 2002
10

The UK Biobank resource with deep phenotyping and genomic data.
Clare Bycroft, Colin Freeman, Desislava Petkova, Gavin Band, Lloyd T Elliott, Kevin Sharp, Allan Motyer, Damjan Vukcevic, Olivier Delaneau, Jared O'Connell,[...]. Nature 2018
10


Genotype imputation with thousands of genomes.
Bryan Howie, Jonathan Marchini, Matthew Stephens. G3 (Bethesda) 2011
674
10

Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX.
Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, XiaoFeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A Gunter. Conf Comput Commun Secur 2017
5
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.