A citation-based method for searching scientific literature

Mohammad Reza Karimi, Amir Hossein Karimi, Shamsozoha Abolmaali, Mehdi Sadeghi, Ulf Schmitz. Brief Bioinform 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Clinically driven design of multi-scale cancer models: the ContraCancrum project paradigm.
K Marias, D Dionysiou, V Sakkalis, N Graf, R M Bohle, P V Coveney, S Wan, A Folarin, P Büchler, M Reyes,[...]. Interface Focus 2011
22
100


The p-medicine portal-a collaboration platform for research in personalised medicine.
Fatima Schera, Gabriele Weiler, Elias Neri, Stephan Kiefer, Norbert Graf. Ecancermedicalscience 2014
4
100

Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation.
Steven Nathaniel Steinway, Jorge G T Zañudo, Wei Ding, Carl Bart Rountree, David J Feith, Thomas P Loughran, Reka Albert. Cancer Res 2014
138
100

Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines.
Paolo Romano, Assunta Manniello, Ottavia Aresu, Massimiliano Armento, Michela Cesaro, Barbara Parodi. Nucleic Acids Res 2009
97
100

BoolNet--an R package for generation, reconstruction and analysis of Boolean networks.
Christoph Müssel, Martin Hopfensitz, Hans A Kestler. Bioinformatics 2010
188
100

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences.
Claudia Manzoni, Demis A Kia, Jana Vandrovcova, John Hardy, Nicholas W Wood, Patrick A Lewis, Raffaele Ferrari. Brief Bioinform 2018
199
100

International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data.
Junjun Zhang, Joachim Baran, A Cros, Jonathan M Guberman, Syed Haider, Jack Hsu, Yong Liang, Elena Rivkin, Jianxin Wang, Brett Whitty,[...]. Database (Oxford) 2011
330
100

FieldML: concepts and implementation.
G Richard Christie, Poul M F Nielsen, Shane A Blackett, Chris P Bradley, Peter J Hunter. Philos Trans A Math Phys Eng Sci 2009
63
100

Dynamic modelling of pathways to cellular senescence reveals strategies for targeted interventions.
Piero Dalle Pezze, Glyn Nelson, Elsje G Otten, Viktor I Korolchuk, Thomas B L Kirkwood, Thomas von Zglinicki, Daryl P Shanley. PLoS Comput Biol 2014
68
100

Systems oncology: toward the clinical application of cancer systems biology.
Manuel Valladares-Ayerbes, Mar Haz-Conde, Moisés Blanco-Calvo. Future Oncol 2015
2
100


In silico modeling predicts drug sensitivity of patient-derived cancer cells.
Sandeep C Pingle, Zeba Sultana, Sandra Pastorino, Pengfei Jiang, Rajesh Mukthavaram, Ying Chao, Ila Sri Bharati, Natsuko Nomura, Milan Makale, Taher Abbasi,[...]. J Transl Med 2014
20
100

Chaste: an open source C++ library for computational physiology and biology.
Gary R Mirams, Christopher J Arthurs, Miguel O Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G Fletcher, Daniel G Harvey,[...]. PLoS Comput Biol 2013
163
100


Development and validation of an in-silico tool for the study of therapeutic agents in 3D cell cultures.
M Cortesi, C Liverani, L Mercatali, T Ibrahim, E Giordano. Comput Biol Med 2021
2
100

Biomolecular network reconstruction identifies T-cell homing factors associated with survival in colorectal cancer.
Bernhard Mlecnik, Marie Tosolini, Pornpimol Charoentong, Amos Kirilovsky, Gabriela Bindea, Anne Berger, Matthieu Camus, Mélanie Gillard, Patrick Bruneval, Wolf-Herman Fridman,[...]. Gastroenterology 2010
212
100


Comparing exponential and exponentiated models of drug demand in cocaine users.
Justin C Strickland, Joshua A Lile, Craig R Rush, William W Stoops. Exp Clin Psychopharmacol 2016
26
100

A Validated Multiscale In-Silico Model for Mechano-sensitive Tumour Angiogenesis and Growth.
Vasileios Vavourakis, Peter A Wijeratne, Rebecca Shipley, Marilena Loizidou, Triantafyllos Stylianopoulos, David J Hawkes. PLoS Comput Biol 2017
25
100

The growing role of precision and personalized medicine for cancer treatment.
Paulina Krzyszczyk, Alison Acevedo, Erika J Davidoff, Lauren M Timmins, Ileana Marrero-Berrios, Misaal Patel, Corina White, Christopher Lowe, Joseph J Sherba, Clara Hartmanshenn,[...]. Technology (Singap World Sci) 2018
88
100

A genome-wide RNA interference screen identifies new regulators of androgen receptor function in prostate cancer cells.
Keren Imberg-Kazdan, Susan Ha, Alex Greenfield, Christopher S Poultney, Richard Bonneau, Susan K Logan, Michael J Garabedian. Genome Res 2013
31
100

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome.
Steven N Steinway, Matthew B Biggs, Thomas P Loughran, Jason A Papin, Reka Albert. PLoS Comput Biol 2015
64
100

Comparison of Drug Inhibitory Effects ([Formula: see text]) in Monolayer and Spheroid Cultures.
Catherine Berrouet, Naika Dorilas, Katarzyna A Rejniak, Necibe Tuncer. Bull Math Biol 2020
9
100

PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data.
Elena Piñeiro-Yáñez, Miguel Reboiro-Jato, Gonzalo Gómez-López, Javier Perales-Patón, Kevin Troulé, José Manuel Rodríguez, Héctor Tejero, Takeshi Shimamura, Pedro Pablo López-Casas, Julián Carretero,[...]. Genome Med 2018
33
100

OncoKB: A Precision Oncology Knowledge Base.
Debyani Chakravarty, Jianjiong Gao, Sarah M Phillips, Ritika Kundra, Hongxin Zhang, Jiaojiao Wang, Julia E Rudolph, Rona Yaeger, Tara Soumerai, Moriah H Nissan,[...]. JCO Precis Oncol 2017
819
100


Genetic regulators of large-scale transcriptional signatures in cancer.
Adam S Adler, Meihong Lin, Hugo Horlings, Dimitry S A Nuyten, Marc J van de Vijver, Howard Y Chang. Nat Genet 2006
177
100

Urinary metabotyping of bladder cancer using two-dimensional gas chromatography time-of-flight mass spectrometry.
Kishore Kumar Pasikanti, Kesavan Esuvaranathan, Yanjun Hong, Paul C Ho, Ratha Mahendran, Lata Raman Nee Mani, Edmund Chiong, Eric Chun Yong Chan. J Proteome Res 2013
64
100

Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
Åsmund Flobak, Anaïs Baudot, Elisabeth Remy, Liv Thommesen, Denis Thieffry, Martin Kuiper, Astrid Lægreid. PLoS Comput Biol 2015
51
100


BIND--The Biomolecular Interaction Network Database.
G D Bader, I Donaldson, C Wolting, B F Ouellette, T Pawson, C W Hogue. Nucleic Acids Res 2001
347
100

Epigenetic Silencing of CDR1as Drives IGF2BP3-Mediated Melanoma Invasion and Metastasis.
Douglas Hanniford, Alejandro Ulloa-Morales, Alcida Karz, Maria Gabriela Berzoti-Coelho, Rana S Moubarak, Beatriz Sánchez-Sendra, Andreas Kloetgen, Veronica Davalos, Jochen Imig, Pamela Wu,[...]. Cancer Cell 2020
107
100

RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.
Markus Krupp, Jens U Marquardt, Ugur Sahin, Peter R Galle, John Castle, Andreas Teufel. Bioinformatics 2012
115
100

Attractor landscape analysis of colorectal tumorigenesis and its reversion.
Sung-Hwan Cho, Sang-Min Park, Ho-Sung Lee, Hwang-Yeol Lee, Kwang-Hyun Cho. BMC Syst Biol 2016
22
100

Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles.
Masahiro Sugimoto, David T Wong, Akiyoshi Hirayama, Tomoyoshi Soga, Masaru Tomita. Metabolomics 2010
526
100

Recent advances in the reconstruction of metabolic models and integration of omics data.
Rajib Saha, Anupam Chowdhury, Costas D Maranas. Curr Opin Biotechnol 2014
69
100

Genome-wide association study identifies novel breast cancer susceptibility loci.
Douglas F Easton, Karen A Pooley, Alison M Dunning, Paul D P Pharoah, Deborah Thompson, Dennis G Ballinger, Jeffery P Struewing, Jonathan Morrison, Helen Field, Robert Luben,[...]. Nature 2007
100

Cancer classification in the genomic era: five contemporary problems.
Qingxuan Song, Sofia D Merajver, Jun Z Li. Hum Genomics 2015
20
100

MALDI profiling of human lung cancer subtypes.
Angelo Gámez-Pozo, Iker Sánchez-Navarro, Manuel Nistal, Enrique Calvo, Rosario Madero, Esther Díaz, Emilio Camafeita, Javier de Castro, Juan Antonio López, Manuel González-Barón,[...]. PLoS One 2009
23
100

Logical modelling of regulatory networks with GINsim 2.3.
A Naldi, D Berenguier, A Fauré, F Lopez, D Thieffry, C Chaouiya. Biosystems 2009
102
100

A Predictive 3D Multi-Scale Model of Biliary Fluid Dynamics in the Liver Lobule.
Kirstin Meyer, Oleksandr Ostrenko, Georgios Bourantas, Hernan Morales-Navarrete, Natalie Porat-Shliom, Fabian Segovia-Miranda, Hidenori Nonaka, Ali Ghaemi, Jean-Marc Verbavatz, Lutz Brusch,[...]. Cell Syst 2017
40
100

A human protein atlas based on antibody proteomics.
Anja Persson, Sophia Hober, Mathias Uhlén. Curr Opin Mol Ther 2006
49
100

Microenvironment driven invasion: a multiscale multimodel investigation.
Alexander R A Anderson, Katarzyna A Rejniak, Philip Gerlee, Vito Quaranta. J Math Biol 2009
62
100

Morphophenotypic classification of tumor organoids as an indicator of drug exposure and penetration potential.
Aleksandra Karolak, Sharan Poonja, Katarzyna A Rejniak. PLoS Comput Biol 2019
9
100



APOBEC3B is an enzymatic source of mutation in breast cancer.
Michael B Burns, Lela Lackey, Michael A Carpenter, Anurag Rathore, Allison M Land, Brandon Leonard, Eric W Refsland, Delshanee Kotandeniya, Natalia Tretyakova, Jason B Nikas,[...]. Nature 2013
529
100

Model for the genetic evolution of human solid tumors.
S E Shackney, C A Smith, B W Miller, D R Burholt, K Murtha, H R Giles, D M Ketterer, A A Pollice. Cancer Res 1989
240
100

Proteomics: An atlas of expression.
Vivien Marx. Nature 2014
10
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.