A citation-based method for searching scientific literature

Jinwook Choi, Yu Jin Jang, Catherine Dabrowska, Elhadi Iich, Kelly V Evans, Helen Hall, Sam M Janes, Benjamin D Simons, Bon-Kyoung Koo, Jonghwan Kim, Joo-Hyeon Lee. Nat Cell Biol 2021
Times Cited: 14







List of co-cited articles
121 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration.
Jinwook Choi, Jong-Eun Park, Georgia Tsagkogeorga, Motoko Yanagita, Bon-Kyoung Koo, Namshik Han, Joo-Hyeon Lee. Cell Stem Cell 2020
122
71

Type 2 alveolar cells are stem cells in adult lung.
Christina E Barkauskas, Michael J Cronce, Craig R Rackley, Emily J Bowie, Douglas R Keene, Barry R Stripp, Scott H Randell, Paul W Noble, Brigid L M Hogan. J Clin Invest 2013
888
71

Human alveolar type 2 epithelium transdifferentiates into metaplastic KRT5+ basal cells.
Jaymin J Kathiriya, Chaoqun Wang, Minqi Zhou, Alexis Brumwell, Monica Cassandras, Claude Jourdan Le Saux, Max Cohen, Kostantinos-Dionysios Alysandratos, Bruce Wang, Paul Wolters,[...]. Nat Cell Biol 2022
31
50

Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis.
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee,[...]. Nat Commun 2020
141
50

Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis.
Yoshihiko Kobayashi, Aleksandra Tata, Arvind Konkimalla, Hiroaki Katsura, Rebecca F Lee, Jianhong Ou, Nicholas E Banovich, Jonathan A Kropski, Purushothama Rao Tata. Nat Cell Biol 2020
123
50

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury.
Andrew E Vaughan, Alexis N Brumwell, Ying Xi, Jeffrey E Gotts, Doug G Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R Looney,[...]. Nature 2015
386
42

IL-1 and TNFα Contribute to the Inflammatory Niche to Enhance Alveolar Regeneration.
Hiroaki Katsura, Yoshihiko Kobayashi, Purushothama Rao Tata, Brigid L M Hogan. Stem Cell Reports 2019
48
42

Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy.
Andrew J Lechner, Ian H Driver, Jinwoo Lee, Carmen M Conroy, Abigail Nagle, Richard M Locksley, Jason R Rock. Cell Stem Cell 2017
124
42

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.
William J Zacharias, David B Frank, Jarod A Zepp, Michael P Morley, Farrah A Alkhaleel, Jun Kong, Su Zhou, Edward Cantu, Edward E Morrisey. Nature 2018
325
42

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
332
42

The Cellular and Physiological Basis for Lung Repair and Regeneration: Past, Present, and Future.
Maria C Basil, Jeremy Katzen, Anna E Engler, Minzhe Guo, Michael J Herriges, Jaymin J Kathiriya, Rebecca Windmueller, Alexandra B Ysasi, William J Zacharias, Hal A Chapman,[...]. Cell Stem Cell 2020
121
35

Lung stem cell differentiation in mice directed by endothelial cells via a BMP4-NFATc1-thrombospondin-1 axis.
Joo-Hyeon Lee, Dong Ha Bhang, Alexander Beede, Tian Lian Huang, Barry R Stripp, Kenneth D Bloch, Amy J Wagers, Yu-Hua Tseng, Sandra Ryeom, Carla F Kim. Cell 2014
279
35

The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium.
Emma L Rawlins, Tadashi Okubo, Yan Xue, David M Brass, Richard L Auten, Hiroshi Hasegawa, Fan Wang, Brigid L M Hogan. Cell Stem Cell 2009
559
35

A molecular single-cell lung atlas of lethal COVID-19.
Johannes C Melms, Jana Biermann, Huachao Huang, Yiping Wang, Ajay Nair, Somnath Tagore, Igor Katsyv, André F Rendeiro, Amit Dipak Amin, Denis Schapiro,[...]. Nature 2021
137
35

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
113
35

Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Ying Xi, Thomas Kim, Alexis N Brumwell, Ian H Driver, Ying Wei, Victor Tan, Julia R Jackson, Jianming Xu, Dong-Kee Lee, Jeffrey E Gotts,[...]. Nat Cell Biol 2017
133
28

Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function.
Brigid L M Hogan, Christina E Barkauskas, Harold A Chapman, Jonathan A Epstein, Rajan Jain, Connie C W Hsia, Laura Niklason, Elizabeth Calle, Andrew Le, Scott H Randell,[...]. Cell Stem Cell 2014
494
28

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis.
Taylor S Adams, Jonas C Schupp, Sergio Poli, Ehab A Ayaub, Nir Neumark, Farida Ahangari, Sarah G Chu, Benjamin A Raby, Giuseppe DeIuliis, Michael Januszyk,[...]. Sci Adv 2020
268
28

Distinct Airway Epithelial Stem Cells Hide among Club Cells but Mobilize to Promote Alveolar Regeneration.
Jaymin J Kathiriya, Alexis N Brumwell, Julia R Jackson, Xiaodan Tang, Harold A Chapman. Cell Stem Cell 2020
69
28

Identification of bronchioalveolar stem cells in normal lung and lung cancer.
Carla F Bender Kim, Erica L Jackson, Amber E Woolfenden, Sharon Lawrence, Imran Babar, Sinae Vogel, Denise Crowley, Roderick T Bronson, Tyler Jacks. Cell 2005
28

Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction.
Qiaozhen Liu, Kuo Liu, Guizhong Cui, Xiuzhen Huang, Shun Yao, Wenke Guo, Zhen Qin, Yan Li, Rui Yang, Wenjuan Pu,[...]. Nat Genet 2019
134
28

Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation.
David B Frank, Tien Peng, Jarod A Zepp, Melinda Snitow, Tiffaney L Vincent, Ian J Penkala, Zheng Cui, Michael J Herriges, Michael P Morley, Su Zhou,[...]. Cell Rep 2016
144
28

Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury.
Kent A Riemondy, Nicole L Jansing, Peng Jiang, Elizabeth F Redente, Austin E Gillen, Rui Fu, Alyssa J Miller, Jason R Spence, Anthony N Gerber, Jay R Hesselberth,[...]. JCI Insight 2019
65
28

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.
Jarod A Zepp, William J Zacharias, David B Frank, Christina A Cavanaugh, Su Zhou, Michael P Morley, Edward E Morrisey. Cell 2017
263
28

Yap/Taz regulate alveolar regeneration and resolution of lung inflammation.
Ryan LaCanna, Daniela Liccardo, Peggy Zhang, Lauren Tragesser, Yan Wang, Tongtong Cao, Harold A Chapman, Edward E Morrisey, Hao Shen, Walter J Koch,[...]. J Clin Invest 2019
102
28

Notch-dependent differentiation of adult airway basal stem cells.
Jason R Rock, Xia Gao, Yan Xue, Scott H Randell, Young-Yun Kong, Brigid L M Hogan. Cell Stem Cell 2011
292
21

Gli1+ mesenchymal stromal cells form a pathological niche to promote airway progenitor metaplasia in the fibrotic lung.
Monica Cassandras, Chaoqun Wang, Jaymin Kathiriya, Tatsuya Tsukui, Peri Matatia, Michael Matthay, Paul Wolters, Ari Molofsky, Dean Sheppard, Hal Chapman,[...]. Nat Cell Biol 2020
31
21

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.
Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey,[...]. JCI Insight 2016
309
21

Rare SOX2+ Airway Progenitor Cells Generate KRT5+ Cells that Repopulate Damaged Alveolar Parenchyma following Influenza Virus Infection.
Samriddha Ray, Norika Chiba, Changfu Yao, Xiangrong Guan, Alicia M McConnell, Brian Brockway, Loretta Que, Jonathan L McQualter, Barry R Stripp. Stem Cell Reports 2016
67
21

Ineffectual Type 2-to-Type 1 Alveolar Epithelial Cell Differentiation in Idiopathic Pulmonary Fibrosis: Persistence of the KRT8hi Transitional State.
Peng Jiang, Rafael Gil de Rubio, Steven M Hrycaj, Stephen J Gurczynski, Kent A Riemondy, Bethany B Moore, M Bishr Omary, Karen M Ridge, Rachel L Zemans. Am J Respir Crit Care Med 2020
51
21

Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate.
Yanjie Wang, Zan Tang, Huanwei Huang, Jiao Li, Zheng Wang, Yuanyuan Yu, Chengwei Zhang, Juan Li, Huaping Dai, Fengchao Wang,[...]. Proc Natl Acad Sci U S A 2018
97
21

Dlk1-Mediated Temporal Regulation of Notch Signaling Is Required for Differentiation of Alveolar Type II to Type I Cells during Repair.
Johanna Finn, Kilian Sottoriva, Kostandin V Pajcini, Jan K Kitajewski, Chang Chen, Wei Zhang, Asrar B Malik, Yuru Liu. Cell Rep 2019
45
21

Development of solitary chemosensory cells in the distal lung after severe influenza injury.
Chetan K Rane, Sergio R Jackson, Christopher F Pastore, Gan Zhao, Aaron I Weiner, Neil N Patel, De'Broski R Herbert, Noam A Cohen, Andrew E Vaughan. Am J Physiol Lung Cell Mol Physiol 2019
47
21

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.
Barbara Treutlein, Doug G Brownfield, Angela R Wu, Norma F Neff, Gary L Mantalas, F Hernan Espinoza, Tushar J Desai, Mark A Krasnow, Stephen R Quake. Nature 2014
827
21

p63(+)Krt5(+) distal airway stem cells are essential for lung regeneration.
Wei Zuo, Ting Zhang, Daniel Zheng'An Wu, Shou Ping Guan, Audrey-Ann Liew, Yusuke Yamamoto, Xia Wang, Siew Joo Lim, Matthew Vincent, Mark Lessard,[...]. Nature 2015
297
21

Progressive Pulmonary Fibrosis Is Caused by Elevated Mechanical Tension on Alveolar Stem Cells.
Huijuan Wu, Yuanyuan Yu, Huanwei Huang, Yucheng Hu, Siling Fu, Zheng Wang, Mengting Shi, Xi Zhao, Jie Yuan, Jiao Li,[...]. Cell 2020
137
21

Chronic WNT/β-catenin signaling induces cellular senescence in lung epithelial cells.
Mareike Lehmann, Qianjiang Hu, Yan Hu, Kathrin Hafner, Rita Costa, Anastasia van den Berg, Melanie Königshoff. Cell Signal 2020
43
21

Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis.
Arun C Habermann, Austin J Gutierrez, Linh T Bui, Stephanie L Yahn, Nichelle I Winters, Carla L Calvi, Lance Peter, Mei-I Chung, Chase J Taylor, Christopher Jetter,[...]. Sci Adv 2020
235
21

TAZ is required for lung alveolar epithelial cell differentiation after injury.
Tianhe Sun, Zhiyu Huang, Hua Zhang, Clara Posner, Guiquan Jia, Thirumalai R Ramalingam, Min Xu, Hans Brightbill, Jackson G Egen, Anwesha Dey,[...]. JCI Insight 2019
37
21

Basal cells as stem cells of the mouse trachea and human airway epithelium.
Jason R Rock, Mark W Onaitis, Emma L Rawlins, Yun Lu, Cheryl P Clark, Yan Xue, Scott H Randell, Brigid L M Hogan. Proc Natl Acad Sci U S A 2009
945
21

Efficient Derivation of Functional Human Airway Epithelium from Pluripotent Stem Cells via Temporal Regulation of Wnt Signaling.
Katherine B McCauley, Finn Hawkins, Maria Serra, Dylan C Thomas, Anjali Jacob, Darrell N Kotton. Cell Stem Cell 2017
214
21

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes.
Daniel T Montoro, Adam L Haber, Moshe Biton, Vladimir Vinarsky, Brian Lin, Susan E Birket, Feng Yuan, Sijia Chen, Hui Min Leung, Jorge Villoria,[...]. Nature 2018
522
21

Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo.
Isabelle Salwig, Birgit Spitznagel, Ana Ivonne Vazquez-Armendariz, Keynoosh Khalooghi, Stefan Guenther, Susanne Herold, Marten Szibor, Thomas Braun. EMBO J 2019
80
21

Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells.
Antonella F M Dost, Aaron L Moye, Marall Vedaie, Linh M Tran, Eileen Fung, Dar Heinze, Carlos Villacorta-Martin, Jessie Huang, Ryan Hekman, Julian H Kwan,[...]. Cell Stem Cell 2020
36
21

Angiocrine Sphingosine-1-Phosphate Activation of S1PR2-YAP Signaling Axis in Alveolar Type II Cells Is Essential for Lung Repair.
Qian Chen, Jalees Rehman, Manwai Chan, Panfeng Fu, Steven M Dudek, Viswanathan Natarajan, Asrar B Malik, Yuru Liu. Cell Rep 2020
23
21

Progenitor identification and SARS-CoV-2 infection in human distal lung organoids.
Ameen A Salahudeen, Shannon S Choi, Arjun Rustagi, Junjie Zhu, Vincent van Unen, Sean M de la O, Ryan A Flynn, Mar Margalef-Català, António J M Santos, Jihang Ju,[...]. Nature 2020
139
21

FGF10-FGFR2B Signaling Generates Basal Cells and Drives Alveolar Epithelial Regeneration by Bronchial Epithelial Stem Cells after Lung Injury.
Tingting Yuan, Thomas Volckaert, Elizabeth F Redente, Seantel Hopkins, Kylie Klinkhammer, Roxana Wasnick, Cho-Ming Chao, Jie Yuan, Jin-San Zhang, Changfu Yao,[...]. Stem Cell Reports 2019
51
14

Notch signaling promotes airway mucous metaplasia and inhibits alveolar development.
J Sawalla Guseh, Sam A Bores, Ben Z Stanger, Qiao Zhou, William J Anderson, Douglas A Melton, Jayaraj Rajagopal. Development 2009
207
14

Hedgehog actively maintains adult lung quiescence and regulates repair and regeneration.
Tien Peng, David B Frank, Rachel S Kadzik, Michael P Morley, Komal S Rathi, Tao Wang, Su Zhou, Lan Cheng, Min Min Lu, Edward E Morrisey. Nature 2015
132
14

Building and Regenerating the Lung Cell by Cell.
Jeffrey A Whitsett, Tanya V Kalin, Yan Xu, Vladimir V Kalinichenko. Physiol Rev 2019
83
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.