Samuel W Brady, Alexander M Gout, Jinghui Zhang. Trends Genet 2022
Times Cited: 11
Times Cited: 11
Times Cited
Times Co-cited
Similarity
Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
45
The repertoire of mutational signatures in human cancer.
Ludmil B Alexandrov, Jaegil Kim, Nicholas J Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R Covington, Dmitry A Gordenin, Erik N Bergstrom,[...]. Nature 2020
Ludmil B Alexandrov, Jaegil Kim, Nicholas J Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R Covington, Dmitry A Gordenin, Erik N Bergstrom,[...]. Nature 2020
45
Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
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Deciphering signatures of mutational processes operative in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Peter J Campbell, Michael R Stratton. Cell Rep 2013
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Peter J Campbell, Michael R Stratton. Cell Rep 2013
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Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder.
Yaoting Gui, Guangwu Guo, Yi Huang, Xueda Hu, Aifa Tang, Shengjie Gao, Renhua Wu, Chao Chen, Xianxin Li, Liang Zhou,[...]. Nat Genet 2011
Yaoting Gui, Guangwu Guo, Yi Huang, Xueda Hu, Aifa Tang, Shengjie Gao, Renhua Wu, Chao Chen, Xianxin Li, Liang Zhou,[...]. Nat Genet 2011
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Cancer Statistics, 2021.
Rebecca L Siegel, Kimberly D Miller, Hannah E Fuchs, Ahmedin Jemal. CA Cancer J Clin 2021
Rebecca L Siegel, Kimberly D Miller, Hannah E Fuchs, Ahmedin Jemal. CA Cancer J Clin 2021
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SomaticSignatures: inferring mutational signatures from single-nucleotide variants.
Julian S Gehring, Bernd Fischer, Michael Lawrence, Wolfgang Huber. Bioinformatics 2015
Julian S Gehring, Bernd Fischer, Michael Lawrence, Wolfgang Huber. Bioinformatics 2015
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Telomerase Reverse Transcriptase (TERT) Regulation in Thyroid Cancer: A Review.
Brittany A McKelvey, Christopher B Umbricht, Martha A Zeiger. Front Endocrinol (Lausanne) 2020
Brittany A McKelvey, Christopher B Umbricht, Martha A Zeiger. Front Endocrinol (Lausanne) 2020
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Whole-Exome Sequencing of Matched Primary and Metastatic Papillary Thyroid Cancer.
Tariq Masoodi, Abdul K Siraj, Sarah Siraj, Saud Azam, Zeeshan Qadri, Wafaa N Albalawy, Sandeep Kumar Parvathareddy, Saif S Al-Sobhi, Fouad Al-Dayel, Fowzan S Alkuraya,[...]. Thyroid 2020
Tariq Masoodi, Abdul K Siraj, Sarah Siraj, Saud Azam, Zeeshan Qadri, Wafaa N Albalawy, Sandeep Kumar Parvathareddy, Saif S Al-Sobhi, Fouad Al-Dayel, Fowzan S Alkuraya,[...]. Thyroid 2020
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EMu: probabilistic inference of mutational processes and their localization in the cancer genome.
Andrej Fischer, Christopher J R Illingworth, Peter J Campbell, Ville Mustonen. Genome Biol 2013
Andrej Fischer, Christopher J R Illingworth, Peter J Campbell, Ville Mustonen. Genome Biol 2013
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The therapeutic significance of mutational signatures from DNA repair deficiency in cancer.
Jennifer Ma, Jeremy Setton, Nancy Y Lee, Nadeem Riaz, Simon N Powell. Nat Commun 2018
Jennifer Ma, Jeremy Setton, Nancy Y Lee, Nadeem Riaz, Simon N Powell. Nat Commun 2018
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Hypermutation in human cancer genomes: footprints and mechanisms.
Steven A Roberts, Dmitry A Gordenin. Nat Rev Cancer 2014
Steven A Roberts, Dmitry A Gordenin. Nat Rev Cancer 2014
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Evolution and Impact of Subclonal Mutations in Papillary Thyroid Cancer.
Tariq Masoodi, Abdul K Siraj, Sarah Siraj, Saud Azam, Zeeshan Qadri, Sandeep K Parvathareddy, Saif S Al-Sobhi, Mohammed AlDawish, Fowzan S Alkuraya, Khawla S Al-Kuraya. Am J Hum Genet 2019
Tariq Masoodi, Abdul K Siraj, Sarah Siraj, Saud Azam, Zeeshan Qadri, Sandeep K Parvathareddy, Saif S Al-Sobhi, Mohammed AlDawish, Fowzan S Alkuraya, Khawla S Al-Kuraya. Am J Hum Genet 2019
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Mechanisms underlying mutational signatures in human cancers.
Thomas Helleday, Saeed Eshtad, Serena Nik-Zainal. Nat Rev Genet 2014
Thomas Helleday, Saeed Eshtad, Serena Nik-Zainal. Nat Rev Genet 2014
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2015 American Thyroid Association Management Guidelines for Adult Patients with Thyroid Nodules and Differentiated Thyroid Cancer: The American Thyroid Association Guidelines Task Force on Thyroid Nodules and Differentiated Thyroid Cancer.
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DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution.
Rachel Rosenthal, Nicholas McGranahan, Javier Herrero, Barry S Taylor, Charles Swanton. Genome Biol 2016
Rachel Rosenthal, Nicholas McGranahan, Javier Herrero, Barry S Taylor, Charles Swanton. Genome Biol 2016
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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.
Kristian Cibulskis, Michael S Lawrence, Scott L Carter, Andrey Sivachenko, David Jaffe, Carrie Sougnez, Stacey Gabriel, Matthew Meyerson, Eric S Lander, Gad Getz. Nat Biotechnol 2013
Kristian Cibulskis, Michael S Lawrence, Scott L Carter, Andrey Sivachenko, David Jaffe, Carrie Sougnez, Stacey Gabriel, Matthew Meyerson, Eric S Lander, Gad Getz. Nat Biotechnol 2013
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Learning mutational signatures and their multidimensional genomic properties with TensorSignatures.
Harald Vöhringer, Arne Van Hoeck, Edwin Cuppen, Moritz Gerstung. Nat Commun 2021
Harald Vöhringer, Arne Van Hoeck, Edwin Cuppen, Moritz Gerstung. Nat Commun 2021
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Mutational signatures: emerging concepts, caveats and clinical applications.
Gene Koh, Andrea Degasperi, Xueqing Zou, Sophie Momen, Serena Nik-Zainal. Nat Rev Cancer 2021
Gene Koh, Andrea Degasperi, Xueqing Zou, Sophie Momen, Serena Nik-Zainal. Nat Rev Cancer 2021
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Recurrent somatic structural variations contribute to tumorigenesis in pediatric osteosarcoma.
Xiang Chen, Armita Bahrami, Alberto Pappo, John Easton, James Dalton, Erin Hedlund, David Ellison, Sheila Shurtleff, Gang Wu, Lei Wei,[...]. Cell Rep 2014
Xiang Chen, Armita Bahrami, Alberto Pappo, John Easton, James Dalton, Erin Hedlund, David Ellison, Sheila Shurtleff, Gang Wu, Lei Wei,[...]. Cell Rep 2014
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Maftools: efficient and comprehensive analysis of somatic variants in cancer.
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
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High expression of PD-1 ligands is associated with kataegis mutational signature and APOBEC3 alterations.
Amélie Boichard, Igor F Tsigelny, Razelle Kurzrock. Oncoimmunology 2017
Amélie Boichard, Igor F Tsigelny, Razelle Kurzrock. Oncoimmunology 2017
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HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.
Helen Davies, Dominik Glodzik, Sandro Morganella, Lucy R Yates, Johan Staaf, Xueqing Zou, Manasa Ramakrishna, Sancha Martin, Sandrine Boyault, Anieta M Sieuwerts,[...]. Nat Med 2017
Helen Davies, Dominik Glodzik, Sandro Morganella, Lucy R Yates, Johan Staaf, Xueqing Zou, Manasa Ramakrishna, Sancha Martin, Sandrine Boyault, Anieta M Sieuwerts,[...]. Nat Med 2017
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Landscape of somatic mutations in 560 breast cancer whole-genome sequences.
Serena Nik-Zainal, Helen Davies, Johan Staaf, Manasa Ramakrishna, Dominik Glodzik, Xueqing Zou, Inigo Martincorena, Ludmil B Alexandrov, Sancha Martin, David C Wedge,[...]. Nature 2016
Serena Nik-Zainal, Helen Davies, Johan Staaf, Manasa Ramakrishna, Dominik Glodzik, Xueqing Zou, Inigo Martincorena, Ludmil B Alexandrov, Sancha Martin, David C Wedge,[...]. Nature 2016
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The mutational footprints of cancer therapies.
Oriol Pich, Ferran Muiños, Martijn Paul Lolkema, Neeltje Steeghs, Abel Gonzalez-Perez, Nuria Lopez-Bigas. Nat Genet 2019
Oriol Pich, Ferran Muiños, Martijn Paul Lolkema, Neeltje Steeghs, Abel Gonzalez-Perez, Nuria Lopez-Bigas. Nat Genet 2019
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Mutational signatures associated with tobacco smoking in human cancer.
Ludmil B Alexandrov, Young Seok Ju, Kerstin Haase, Peter Van Loo, Iñigo Martincorena, Serena Nik-Zainal, Yasushi Totoki, Akihiro Fujimoto, Hidewaki Nakagawa, Tatsuhiro Shibata,[...]. Science 2016
Ludmil B Alexandrov, Young Seok Ju, Kerstin Haase, Peter Van Loo, Iñigo Martincorena, Serena Nik-Zainal, Yasushi Totoki, Akihiro Fujimoto, Hidewaki Nakagawa, Tatsuhiro Shibata,[...]. Science 2016
18
Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors.
Jaegil Kim, Kent W Mouw, Paz Polak, Lior Z Braunstein, Atanas Kamburov, David J Kwiatkowski, Jonathan E Rosenberg, Eliezer M Van Allen, Alan D'Andrea, Gad Getz. Nat Genet 2016
Jaegil Kim, Kent W Mouw, Paz Polak, Lior Z Braunstein, Atanas Kamburov, David J Kwiatkowski, Jonathan E Rosenberg, Eliezer M Van Allen, Alan D'Andrea, Gad Getz. Nat Genet 2016
18
Clock-like mutational processes in human somatic cells.
Ludmil B Alexandrov, Philip H Jones, David C Wedge, Julian E Sale, Peter J Campbell, Serena Nik-Zainal, Michael R Stratton. Nat Genet 2015
Ludmil B Alexandrov, Philip H Jones, David C Wedge, Julian E Sale, Peter J Campbell, Serena Nik-Zainal, Michael R Stratton. Nat Genet 2015
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Tumor mutation burden for predicting immune checkpoint blockade response: the more, the better.
Ming Zheng. J Immunother Cancer 2022
Ming Zheng. J Immunother Cancer 2022
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Predicting immunotherapy response through genomics.
Marina Candido Visontai Cormedi, Eliezer M Van Allen, Leandro Machado Colli. Curr Opin Genet Dev 2021
Marina Candido Visontai Cormedi, Eliezer M Van Allen, Leandro Machado Colli. Curr Opin Genet Dev 2021
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Epigenetic Treatment of Urothelial Carcinoma Cells Sensitizes to Cisplatin Chemotherapy and PARP Inhibitor Treatment.
Sophia Thy, Alexandra Hommel, Sarah Meneceur, Anna L Bartkowiak, Wolfgang A Schulz, Günter Niegisch, Michèle J Hoffmann. Cancers (Basel) 2021
Sophia Thy, Alexandra Hommel, Sarah Meneceur, Anna L Bartkowiak, Wolfgang A Schulz, Günter Niegisch, Michèle J Hoffmann. Cancers (Basel) 2021
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Genomic Signatures Predict the Immunogenicity of BRCA-Deficient Breast Cancer.
Adam A Kraya, Kara N Maxwell, Bradley Wubbenhorst, Brandon M Wenz, John Pluta, Andrew J Rech, Liza M Dorfman, Nicole Lunceford, Amanda Barrett, Nandita Mitra,[...]. Clin Cancer Res 2019
Adam A Kraya, Kara N Maxwell, Bradley Wubbenhorst, Brandon M Wenz, John Pluta, Andrew J Rech, Liza M Dorfman, Nicole Lunceford, Amanda Barrett, Nandita Mitra,[...]. Clin Cancer Res 2019
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Randomized phase III KEYNOTE-045 trial of pembrolizumab versus paclitaxel, docetaxel, or vinflunine in recurrent advanced urothelial cancer: results of >2 years of follow-up.
Y Fradet, J Bellmunt, D J Vaughn, J L Lee, L Fong, N J Vogelzang, M A Climent, D P Petrylak, T K Choueiri, A Necchi,[...]. Ann Oncol 2019
Y Fradet, J Bellmunt, D J Vaughn, J L Lee, L Fong, N J Vogelzang, M A Climent, D P Petrylak, T K Choueiri, A Necchi,[...]. Ann Oncol 2019
9
APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response.
Alexander P Glaser, Damiano Fantini, Yiduo Wang, Yanni Yu, Kalen J Rimar, Joseph R Podojil, Stephen D Miller, Joshua J Meeks. Oncotarget 2017
Alexander P Glaser, Damiano Fantini, Yiduo Wang, Yanni Yu, Kalen J Rimar, Joseph R Podojil, Stephen D Miller, Joshua J Meeks. Oncotarget 2017
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The Current Status and Future Role of the Phosphoinositide 3 Kinase/AKT Signaling Pathway in Urothelial Cancer: An Old Pathway in the New Immunotherapy Era.
Sandy T Liu, Gavin Hui, Colleen Mathis, Karim Chamie, Allan J Pantuck, Alexandra Drakaki. Clin Genitourin Cancer 2018
Sandy T Liu, Gavin Hui, Colleen Mathis, Karim Chamie, Allan J Pantuck, Alexandra Drakaki. Clin Genitourin Cancer 2018
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Tumor Mutational Burden as a Predictive Biomarker for Response to Immune Checkpoint Inhibitors: A Review of Current Evidence.
Samuel J Klempner, David Fabrizio, Shalmali Bane, Marcia Reinhart, Tim Peoples, Siraj M Ali, Ethan S Sokol, Garrett Frampton, Alexa B Schrock, Rachel Anhorn,[...]. Oncologist 2020
Samuel J Klempner, David Fabrizio, Shalmali Bane, Marcia Reinhart, Tim Peoples, Siraj M Ali, Ethan S Sokol, Garrett Frampton, Alexa B Schrock, Rachel Anhorn,[...]. Oncologist 2020
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APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development.
Stephen Henderson, Ankur Chakravarthy, Xiaoping Su, Chris Boshoff, Tim Robert Fenton. Cell Rep 2014
Stephen Henderson, Ankur Chakravarthy, Xiaoping Su, Chris Boshoff, Tim Robert Fenton. Cell Rep 2014
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Treatment resistance in urothelial carcinoma: an evolutionary perspective.
Panagiotis J Vlachostergios, Bishoy M Faltas. Nat Rev Clin Oncol 2018
Panagiotis J Vlachostergios, Bishoy M Faltas. Nat Rev Clin Oncol 2018
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Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting.
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Hirokazu Matsushita, Matthew D Vesely, Daniel C Koboldt, Charles G Rickert, Ravindra Uppaluri, Vincent J Magrini, Cora D Arthur, J Michael White, Yee-Shiuan Chen, Lauren K Shea,[...]. Nature 2012
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The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
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Combination therapy in advanced urothelial cancer: the role of PARP, HER-2 and mTOR inhibitors.
Veronica Mollica, Ilaria Maggio, Antonio Lopez-Beltran, Rodolfo Montironi, Alessia Cimadamore, Liang Cheng, Alessandro Rizzo, Francesca Giunchi, Riccardo Schiavina, Michelangelo Fiorentino,[...]. Expert Rev Anticancer Ther 2020
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Immune checkpoint blockade resistance-related B2M hotspot mutations in microsatellite-unstable colorectal carcinoma.
Su Yeon Yeon, Seung-Hyun Jung, Yun Sol Jo, Eun Ji Choi, Min Sung Kim, Yeun-Jun Chung, Sug Hyung Lee. Pathol Res Pract 2019
Su Yeon Yeon, Seung-Hyun Jung, Yun Sol Jo, Eun Ji Choi, Min Sung Kim, Yeun-Jun Chung, Sug Hyung Lee. Pathol Res Pract 2019
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Alexandra Snyder, Vladimir Makarov, Matthew Hellmann, Naiyer Rizvi, Taha Merghoub, Jedd D Wolchok, Timothy A Chan. Oncoimmunology 2015
Alexandra Snyder, Vladimir Makarov, Matthew Hellmann, Naiyer Rizvi, Taha Merghoub, Jedd D Wolchok, Timothy A Chan. Oncoimmunology 2015
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Phosphoinositide 3-Kinase Signaling Can Modulate MHC Class I and II Expression.
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Long-term survival results of a randomized trial comparing gemcitabine plus cisplatin, with methotrexate, vinblastine, doxorubicin, plus cisplatin in patients with bladder cancer.
Hans von der Maase, Lisa Sengelov, James T Roberts, Sergio Ricci, Luigi Dogliotti, T Oliver, Malcolm J Moore, Annamaria Zimmermann, Michael Arning. J Clin Oncol 2005
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Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.