Pushpendra K Gupta. Bioessays 2021
Times Cited: 2
Times Cited: 2
Times Cited
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Similarity
Structural variant calling: the long and the short of it.
Medhat Mahmoud, Nastassia Gobet, Diana Ivette Cruz-Dávalos, Ninon Mounier, Christophe Dessimoz, Fritz J Sedlazeck. Genome Biol 2019
Medhat Mahmoud, Nastassia Gobet, Diana Ivette Cruz-Dávalos, Ninon Mounier, Christophe Dessimoz, Fritz J Sedlazeck. Genome Biol 2019
50
Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates.
Geneviève Arsenault-Labrecque, Humira Sonah, Amandine Lebreton, Caroline Labbé, Geneviève Marchand, Allen Xue, François Belzile, Brian J Knaus, Niklaus J Grünwald, Richard R Bélanger. BMC Biol 2018
Geneviève Arsenault-Labrecque, Humira Sonah, Amandine Lebreton, Caroline Labbé, Geneviève Marchand, Allen Xue, François Belzile, Brian J Knaus, Niklaus J Grünwald, Richard R Bélanger. BMC Biol 2018
50
Soybean Resistance to the Soybean Cyst Nematode Heterodera glycines: An Update.
Melissa G Mitchum. Phytopathology 2016
Melissa G Mitchum. Phytopathology 2016
50
Whole-genome re-sequencing reveals the impact of the interaction of copy number variants of the rhg1 and Rhg4 genes on broad-based resistance to soybean cyst nematode.
Gunvant B Patil, Naoufal Lakhssassi, Jinrong Wan, Li Song, Zhou Zhou, Mariola Klepadlo, Tri D Vuong, Adrian O Stec, Sondus S Kahil, Vincent Colantonio,[...]. Plant Biotechnol J 2019
Gunvant B Patil, Naoufal Lakhssassi, Jinrong Wan, Li Song, Zhou Zhou, Mariola Klepadlo, Tri D Vuong, Adrian O Stec, Sondus S Kahil, Vincent Colantonio,[...]. Plant Biotechnol J 2019
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Genome-Wide Identification of Chalcone Reductase Gene Family in Soybean: Insight into Root-Specific GmCHRs and Phytophthora sojae Resistance.
Caroline J Sepiol, Jaeju Yu, Sangeeta Dhaubhadel. Front Plant Sci 2017
Caroline J Sepiol, Jaeju Yu, Sangeeta Dhaubhadel. Front Plant Sci 2017
50
Development of a Simple Hydroponic Assay to Study Vertical and Horizontal Resistance of Soybean and Pathotypes of Phytophthora sojae.
A Lebreton, C Labbé, M De Ronne, A G Xue, G Marchand, R R Bélanger. Plant Dis 2018
A Lebreton, C Labbé, M De Ronne, A G Xue, G Marchand, R R Bélanger. Plant Dis 2018
50
Genomic Profiling of Virulence in the Soybean Cyst Nematode Using Single-Nematode Sequencing.
Dave T Ste-Croix, Anne-Frédérique Gendron St-Marseille, Etienne Lord, Richard R Bélanger, Jacques Brodeur, Benjamin Mimee. Phytopathology 2021
Dave T Ste-Croix, Anne-Frédérique Gendron St-Marseille, Etienne Lord, Richard R Bélanger, Jacques Brodeur, Benjamin Mimee. Phytopathology 2021
50
An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping.
Humira Sonah, Maxime Bastien, Elmer Iquira, Aurélie Tardivel, Gaétan Légaré, Brian Boyle, Éric Normandeau, Jérôme Laroche, Stéphane Larose, Martine Jean,[...]. PLoS One 2013
Humira Sonah, Maxime Bastien, Elmer Iquira, Aurélie Tardivel, Gaétan Légaré, Brian Boyle, Éric Normandeau, Jérôme Laroche, Stéphane Larose, Martine Jean,[...]. PLoS One 2013
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Search-and-replace genome editing without double-strand breaks or donor DNA.
Andrew V Anzalone, Peyton B Randolph, Jessie R Davis, Alexander A Sousa, Luke W Koblan, Jonathan M Levy, Peter J Chen, Christopher Wilson, Gregory A Newby, Aditya Raguram,[...]. Nature 2019
Andrew V Anzalone, Peyton B Randolph, Jessie R Davis, Alexander A Sousa, Luke W Koblan, Jonathan M Levy, Peter J Chen, Christopher Wilson, Gregory A Newby, Aditya Raguram,[...]. Nature 2019
50
Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding.
Philipp E Bayer, Babu Valliyodan, Haifei Hu, Jacob I Marsh, Yuxuan Yuan, Tri D Vuong, Gunvant Patil, Qijian Song, Jacqueline Batley, Rajeev K Varshney,[...]. Plant Genome 2022
Philipp E Bayer, Babu Valliyodan, Haifei Hu, Jacob I Marsh, Yuxuan Yuan, Tri D Vuong, Gunvant Patil, Qijian Song, Jacqueline Batley, Rajeev K Varshney,[...]. Plant Genome 2022
50
The pan-genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content.
Davoud Torkamaneh, Marc-André Lemay, François Belzile. Plant Biotechnol J 2021
Davoud Torkamaneh, Marc-André Lemay, François Belzile. Plant Biotechnol J 2021
50
Mapping of partial resistance to Phytophthora sojae in soybean PIs using whole-genome sequencing reveals a major QTL.
Maxime de Ronne, Parthasarathy Santhanam, Benjamin Cinget, Caroline Labbé, Amandine Lebreton, Heng Ye, Tri D Vuong, Haifei Hu, Babu Valliyodan, David Edwards,[...]. Plant Genome 2022
Maxime de Ronne, Parthasarathy Santhanam, Benjamin Cinget, Caroline Labbé, Amandine Lebreton, Heng Ye, Tri D Vuong, Haifei Hu, Babu Valliyodan, David Edwards,[...]. Plant Genome 2022
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Coming of age: ten years of next-generation sequencing technologies.
Sara Goodwin, John D McPherson, W Richard McCombie. Nat Rev Genet 2016
Sara Goodwin, John D McPherson, W Richard McCombie. Nat Rev Genet 2016
50
Soybean BARCSoySNP6K: An assay for soybean genetics and breeding research.
Qijian Song, Long Yan, Charles Quigley, Edward Fickus, He Wei, Linfeng Chen, Faming Dong, Susan Araya, Jinlong Liu, David Hyten,[...]. Plant J 2020
Qijian Song, Long Yan, Charles Quigley, Edward Fickus, He Wei, Linfeng Chen, Faming Dong, Susan Araya, Jinlong Liu, David Hyten,[...]. Plant J 2020
50
Molecular mechanisms for the photoperiodic regulation of flowering in soybean.
Xiaoya Lin, Baohui Liu, James L Weller, Jun Abe, Fanjiang Kong. J Integr Plant Biol 2021
Xiaoya Lin, Baohui Liu, James L Weller, Jun Abe, Fanjiang Kong. J Integr Plant Biol 2021
50
Characterization of the Soluble NSF Attachment Protein gene family identifies two members involved in additive resistance to a plant pathogen.
Naoufal Lakhssassi, Shiming Liu, Sadia Bekal, Zhou Zhou, Vincent Colantonio, Kris Lambert, Abdelali Barakat, Khalid Meksem. Sci Rep 2017
Naoufal Lakhssassi, Shiming Liu, Sadia Bekal, Zhou Zhou, Vincent Colantonio, Kris Lambert, Abdelali Barakat, Khalid Meksem. Sci Rep 2017
50
Genome-wide association mapping of Sclerotinia sclerotiorum resistance in soybean using whole-genome resequencing data.
Chiheb Boudhrioua, Maxime Bastien, Davoud Torkamaneh, François Belzile. BMC Plant Biol 2020
Chiheb Boudhrioua, Maxime Bastien, Davoud Torkamaneh, François Belzile. BMC Plant Biol 2020
50
Haplotype diversity underlying quantitative traits in Canadian soybean breeding germplasm.
Robert W Bruce, Davoud Torkamaneh, Christopher M Grainger, François Belzile, Milad Eskandari, Istvan Rajcan. Theor Appl Genet 2020
Robert W Bruce, Davoud Torkamaneh, Christopher M Grainger, François Belzile, Milad Eskandari, Istvan Rajcan. Theor Appl Genet 2020
50
Discriminant haplotypes of avirulence genes of Phytophthora sojae lead to a molecular assay to predict phenotypes.
Chloé Dussault-Benoit, Geneviève Arsenault-Labrecque, Humira Sonah, François Belzile, Richard R Bélanger. Mol Plant Pathol 2020
Chloé Dussault-Benoit, Geneviève Arsenault-Labrecque, Humira Sonah, François Belzile, Richard R Bélanger. Mol Plant Pathol 2020
50
Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics.
Davoud Torkamaneh, Jérôme Laroche, Babu Valliyodan, Louise O'Donoughue, Elroy Cober, Istvan Rajcan, Ricardo Vilela Abdelnoor, Avinash Sreedasyam, Jeremy Schmutz, Henry T Nguyen,[...]. Plant Biotechnol J 2021
Davoud Torkamaneh, Jérôme Laroche, Babu Valliyodan, Louise O'Donoughue, Elroy Cober, Istvan Rajcan, Ricardo Vilela Abdelnoor, Avinash Sreedasyam, Jeremy Schmutz, Henry T Nguyen,[...]. Plant Biotechnol J 2021
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Molecular Assessment of Pathotype Diversity of Phytophthora sojae in Canada Highlights Declining Sources of Resistance in Soybean.
Vanessa Tremblay, Debra L McLaren, Yong Min Kim, Stephen E Strelkov, Robert L Conner, Owen Wally, Richard R Bélanger. Plant Dis 2021
Vanessa Tremblay, Debra L McLaren, Yong Min Kim, Stephen E Strelkov, Robert L Conner, Owen Wally, Richard R Bélanger. Plant Dis 2021
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Toward a "Green Revolution" for Soybean.
Shulin Liu, Min Zhang, Feng Feng, Zhixi Tian. Mol Plant 2020
Shulin Liu, Min Zhang, Feng Feng, Zhixi Tian. Mol Plant 2020
50
Pan-Genome of Wild and Cultivated Soybeans.
Yucheng Liu, Huilong Du, Pengcheng Li, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Haikuan Zhang, Zhi Liu, Miao Shi,[...]. Cell 2020
Yucheng Liu, Huilong Du, Pengcheng Li, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Haikuan Zhang, Zhi Liu, Miao Shi,[...]. Cell 2020
50
A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis.
Xiaoning Cai, Jenny Ballif, Saori Endo, Elizabeth Davis, Mingxiang Liang, Dong Chen, Daryll DeWald, Joel Kreps, Tong Zhu, Yajun Wu. Plant Physiol 2007
Xiaoning Cai, Jenny Ballif, Saori Endo, Elizabeth Davis, Mingxiang Liang, Dong Chen, Daryll DeWald, Joel Kreps, Tong Zhu, Yajun Wu. Plant Physiol 2007
50
Comprehensive Genome-Wide Association Analysis Reveals the Genetic Basis of Root System Architecture in Soybean.
Waldiodio Seck, Davoud Torkamaneh, François Belzile. Front Plant Sci 2020
Waldiodio Seck, Davoud Torkamaneh, François Belzile. Front Plant Sci 2020
50
The Nuclear Factor Y subunits NF-YB2 and NF-YB3 play additive roles in the promotion of flowering by inductive long-day photoperiods in Arabidopsis.
Roderick W Kumimoto, Luc Adam, Graham J Hymus, Peter P Repetti, T Lynne Reuber, Colleen M Marion, Frederick D Hempel, Oliver J Ratcliffe. Planta 2008
Roderick W Kumimoto, Luc Adam, Graham J Hymus, Peter P Repetti, T Lynne Reuber, Colleen M Marion, Frederick D Hempel, Oliver J Ratcliffe. Planta 2008
50
Comprehensive description of genomewide nucleotide and structural variation in short-season soya bean.
Davoud Torkamaneh, Jérôme Laroche, Aurélie Tardivel, Louise O'Donoughue, Elroy Cober, Istvan Rajcan, François Belzile. Plant Biotechnol J 2018
Davoud Torkamaneh, Jérôme Laroche, Aurélie Tardivel, Louise O'Donoughue, Elroy Cober, Istvan Rajcan, François Belzile. Plant Biotechnol J 2018
50
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Integrated QTL mapping, gene expression and nucleotide variation analyses to investigate complex quantitative traits: a case study with the soybean-Phytophthora sojae interaction.
Maxime de Ronne, Caroline Labbé, Amandine Lebreton, Humira Sonah, Rupesh Deshmukh, Martine Jean, François Belzile, Louise O'Donoughue, Richard Bélanger. Plant Biotechnol J 2020
Maxime de Ronne, Caroline Labbé, Amandine Lebreton, Humira Sonah, Rupesh Deshmukh, Martine Jean, François Belzile, Louise O'Donoughue, Richard Bélanger. Plant Biotechnol J 2020
50
Genome-wide association identifies several QTLs controlling cysteine and methionine content in soybean seed including some promising candidate genes.
Sidiki Malle, Milad Eskandari, Malcolm Morrison, François Belzile. Sci Rep 2020
Sidiki Malle, Milad Eskandari, Malcolm Morrison, François Belzile. Sci Rep 2020
50
Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines.
Tanya R Copley, Marc-Olivier Duceppe, Louise S O'Donoughue. BMC Genomics 2018
Tanya R Copley, Marc-Olivier Duceppe, Louise S O'Donoughue. BMC Genomics 2018
50
The CRISPR/Cas revolution continues: From efficient gene editing for crop breeding to plant synthetic biology.
Jochen Kumlehn, Janine Pietralla, Goetz Hensel, Michael Pacher, Holger Puchta. J Integr Plant Biol 2018
Jochen Kumlehn, Janine Pietralla, Goetz Hensel, Michael Pacher, Holger Puchta. J Integr Plant Biol 2018
50
A Systematic Gene-Centric Approach to Define Haplotypes and Identify Alleles on the Basis of Dense Single Nucleotide Polymorphism Datasets.
Aurélie Tardivel, Davoud Torkamaneh, Marc-André Lemay, François Belzile, Louise S O'Donoughue. Plant Genome 2019
Aurélie Tardivel, Davoud Torkamaneh, Marc-André Lemay, François Belzile, Louise S O'Donoughue. Plant Genome 2019
50
Development of Three Sets of High-Throughput Genotyped Rice Chromosome Segment Substitution Lines and QTL Mapping for Eleven Traits.
Bin Zhang, Lianguang Shang, Banpu Ruan, Anpeng Zhang, Shenglong Yang, Hongzhen Jiang, Chaolei Liu, Kai Hong, Hai Lin, Zhenyu Gao,[...]. Rice (N Y) 2019
Bin Zhang, Lianguang Shang, Banpu Ruan, Anpeng Zhang, Shenglong Yang, Hongzhen Jiang, Chaolei Liu, Kai Hong, Hai Lin, Zhenyu Gao,[...]. Rice (N Y) 2019
50
Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance.
Marek Glombik, Dario Copetti, Jan Bartos, Stepan Stoces, Zbigniew Zwierzykowski, Tom Ruttink, Jonathan F Wendel, Martin Duchoslav, Jaroslav Dolezel, Bruno Studer,[...]. Plant J 2021
Marek Glombik, Dario Copetti, Jan Bartos, Stepan Stoces, Zbigniew Zwierzykowski, Tom Ruttink, Jonathan F Wendel, Martin Duchoslav, Jaroslav Dolezel, Bruno Studer,[...]. Plant J 2021
50
Examining two sets of introgression lines across multiple environments reveals background-independent and stably expressed quantitative trait loci of fiber quality in cotton.
Yuzhen Shi, Aiying Liu, Junwen Li, Jinfa Zhang, Shaoqi Li, Jinfeng Zhang, Liujun Ma, Rui He, Weiwu Song, Lixue Guo,[...]. Theor Appl Genet 2020
Yuzhen Shi, Aiying Liu, Junwen Li, Jinfa Zhang, Shaoqi Li, Jinfeng Zhang, Liujun Ma, Rui He, Weiwu Song, Lixue Guo,[...]. Theor Appl Genet 2020
50
Breeding crops to feed 10 billion.
Lee T Hickey, Amber N Hafeez, Hannah Robinson, Scott A Jackson, Soraya C M Leal-Bertioli, Mark Tester, Caixia Gao, Ian D Godwin, Ben J Hayes, Brande B H Wulff. Nat Biotechnol 2019
Lee T Hickey, Amber N Hafeez, Hannah Robinson, Scott A Jackson, Soraya C M Leal-Bertioli, Mark Tester, Caixia Gao, Ian D Godwin, Ben J Hayes, Brande B H Wulff. Nat Biotechnol 2019
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Development, identification and utilization of introgression lines using Chinese endemic and synthetic wheat as donors.
Liqing Gu, Bo Wei, Renchun Fan, Xu Jia, Xianping Wang, Xiangqi Zhang. J Integr Plant Biol 2015
Liqing Gu, Bo Wei, Renchun Fan, Xu Jia, Xianping Wang, Xiangqi Zhang. J Integr Plant Biol 2015
50
QTL Mapping for Fiber Quality and Yield Traits Based on Introgression Lines Derived from Gossypium hirsutum × G. tomentosum.
Ayaz Ali Keerio, Chao Shen, Yichun Nie, Muhammad Mahmood Ahmed, Xianlong Zhang, Zhongxu Lin. Int J Mol Sci 2018
Ayaz Ali Keerio, Chao Shen, Yichun Nie, Muhammad Mahmood Ahmed, Xianlong Zhang, Zhongxu Lin. Int J Mol Sci 2018
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Genome-wide quantitative trait loci reveal the genetic basis of cotton fibre quality and yield-related traits in a Gossypium hirsutum recombinant inbred line population.
Zhen Zhang, Junwen Li, Muhammad Jamshed, Yuzhen Shi, Aiying Liu, Juwu Gong, Shufang Wang, Jianhong Zhang, Fuding Sun, Fei Jia,[...]. Plant Biotechnol J 2020
Zhen Zhang, Junwen Li, Muhammad Jamshed, Yuzhen Shi, Aiying Liu, Juwu Gong, Shufang Wang, Jianhong Zhang, Fuding Sun, Fei Jia,[...]. Plant Biotechnol J 2020
50
Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense.
Maojun Wang, Lili Tu, Daojun Yuan, De Zhu, Chao Shen, Jianying Li, Fuyan Liu, Liuling Pei, Pengcheng Wang, Guannan Zhao,[...]. Nat Genet 2019
Maojun Wang, Lili Tu, Daojun Yuan, De Zhu, Chao Shen, Jianying Li, Fuyan Liu, Liuling Pei, Pengcheng Wang, Guannan Zhao,[...]. Nat Genet 2019
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Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton.
Yan Hu, Jiedan Chen, Lei Fang, Zhiyuan Zhang, Wei Ma, Yongchao Niu, Longzhen Ju, Jieqiong Deng, Ting Zhao, Jinmin Lian,[...]. Nat Genet 2019
Yan Hu, Jiedan Chen, Lei Fang, Zhiyuan Zhang, Wei Ma, Yongchao Niu, Longzhen Ju, Jieqiong Deng, Ting Zhao, Jinmin Lian,[...]. Nat Genet 2019
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A Gurevich, Mikhail Dvorkin, Alexander S Kulikov, Valery M Lesin, Sergey I Nikolenko, Son Pham, Andrey D Prjibelski,[...]. J Comput Biol 2012
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A Gurevich, Mikhail Dvorkin, Alexander S Kulikov, Valery M Lesin, Sergey I Nikolenko, Son Pham, Andrey D Prjibelski,[...]. J Comput Biol 2012
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Cotton pan-genome retrieves the lost sequences and genes during domestication and selection.
Jianying Li, Daojun Yuan, Pengcheng Wang, Qiongqiong Wang, Mengling Sun, Zhenping Liu, Huan Si, Zhongping Xu, Yizan Ma, Boyang Zhang,[...]. Genome Biol 2021
Jianying Li, Daojun Yuan, Pengcheng Wang, Qiongqiong Wang, Mengling Sun, Zhenping Liu, Huan Si, Zhongping Xu, Yizan Ma, Boyang Zhang,[...]. Genome Biol 2021
50
Comparative transcriptome analysis of cotton fiber development of Upland cotton (Gossypium hirsutum) and Chromosome Segment Substitution Lines from G. hirsutum × G. barbadense.
Peng-Tao Li, Mi Wang, Quan-Wei Lu, Qun Ge, Md Harun Or Rashid, Ai-Ying Liu, Ju-Wu Gong, Hai-Hong Shang, Wan-Kui Gong, Jun-Wen Li,[...]. BMC Genomics 2017
Peng-Tao Li, Mi Wang, Quan-Wei Lu, Qun Ge, Md Harun Or Rashid, Ai-Ying Liu, Ju-Wu Gong, Hai-Hong Shang, Wan-Kui Gong, Jun-Wen Li,[...]. BMC Genomics 2017
50
QTL analysis for yield and fibre quality traits using three sets of introgression lines developed from three Gossypium hirsutum race stocks.
Liuchun Feng, Shuwen Zhang, Luting Xing, Biao Yang, Xiang Gao, Xinmei Xie, Baoliang Zhou. Mol Genet Genomics 2019
Liuchun Feng, Shuwen Zhang, Luting Xing, Biao Yang, Xiang Gao, Xinmei Xie, Baoliang Zhou. Mol Genet Genomics 2019
50
High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.).
Kuang Zhang, Vasu Kuraparthy, Hui Fang, Linglong Zhu, Shilpa Sood, Don C Jones. BMC Genomics 2019
Kuang Zhang, Vasu Kuraparthy, Hui Fang, Linglong Zhu, Shilpa Sood, Don C Jones. BMC Genomics 2019
50
High-density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China.
Xinhui Nie, Tianwang Wen, Panxia Shao, Binghui Tang, Aini Nuriman-Guli, Yu Yu, Xiongming Du, Chunyuan You, Zhongxu Lin. Plant J 2020
Xinhui Nie, Tianwang Wen, Panxia Shao, Binghui Tang, Aini Nuriman-Guli, Yu Yu, Xiongming Du, Chunyuan You, Zhongxu Lin. Plant J 2020
50
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.