A citation-based method for searching scientific literature

Roel Tans, Shoumit Dey, Nidhi Sharma Dey, Grant Calder, Peter O'Toole, Paul M Kaye, Ron M A Heeren. Front Microbiol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


BLIMP-1 Mediated Downregulation of TAK1 and p53 Molecules Is Crucial in the Pathogenesis of Kala-Azar.
Gundappa Saha, Adarsh Kumar Chiranjivi, Bakulesh M Khamar, Kumari Prerna, Manish Kumar, Vikash Kumar Dubey. Front Cell Infect Microbiol 2020
1
100

Candidates for Balancing Selection in Leishmania donovani Complex Parasites.
Cooper Alastair Grace, Sarah Forrester, Vladimir Costa Silva, Kátia Silene Sousa Carvalho, Hannah Kilford, Yen Peng Chew, Sally James, Dorcas L Costa, Jeremy C Mottram, Carlos C H N Costa,[...]. Genome Biol Evol 2021
3
100

15-Lipoxygenase-1 biosynthesis of 7S,14S-diHDHA implicates 15-lipoxygenase-2 in biosynthesis of resolvin D5.
Steven C Perry, Chakrapani Kalyanaraman, Benjamin E Tourdot, William S Conrad, Oluwayomi Akinkugbe, John Cody Freedman, Michael Holinstat, Matthew P Jacobson, Theodore R Holman. J Lipid Res 2020
19
100

Indoleamine 2,3-dioxygenase activity as a potential biomarker of immune suppression during visceral leishmaniasis.
Jean-Pierre Gangneux, Yves Poinsignon, Ludovic Donaghy, Laurence Amiot, Karin Tarte, Charles Mary, Florence Robert-Gangneux. Innate Immun 2013
13
100

Dissecting pathways to thrombocytopenia in a mouse model of visceral leishmaniasis.
Gulab Fatima Rani, Olivier Preham, Helen Ashwin, Najmeeyah Brown, Ian S Hitchcock, Paul M Kaye. Blood Adv 2021
3
100

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
100

Transcriptional profiling of the spleen in progressive visceral leishmaniasis reveals mixed expression of type 1 and type 2 cytokine-responsive genes.
Claudia M Espitia, Omar A Saldarriaga, Bruno L Travi, E Yaneth Osorio, Alvaro Hernandez, Mark Band, Mandakini J Patel, Audrie A Medina, Michael Cappello, Andrew Pekosz,[...]. BMC Immunol 2014
12
100

TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Martin Aslett, Cristina Aurrecoechea, Matthew Berriman, John Brestelli, Brian P Brunk, Mark Carrington, Daniel P Depledge, Steve Fischer, Bindu Gajria, Xin Gao,[...]. Nucleic Acids Res 2010
629
100

Prevalence, severity, and pathogeneses of anemia in visceral leishmaniasis.
Yasuyuki Goto, Jingjie Cheng, Satoko Omachi, Ayako Morimoto. Parasitol Res 2017
18
100

Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation.
A Saxena, T Lahav, N Holland, G Aggarwal, A Anupama, Y Huang, H Volpin, P J Myler, D Zilberstein. Mol Biochem Parasitol 2007
119
100

Toll-Like Receptor- and Protein Kinase R-Induced Type I Interferon Sustains Infection of Leishmania donovani in Macrophages.
Bruna T Dias, Amy Goundry, Aislan C Vivarini, Tatiana F R Costa, Jeremy C Mottram, Ulisses G Lopes, Ana Paula C A Lima. Front Immunol 2022
3
100

Expression of multiple CPB genes encoding cysteine proteases is required for Leishmania mexicana virulence in vivo.
Hubert Denise, Kathryn McNeil, Darren R Brooks, James Alexander, Graham H Coombs, Jeremy C Mottram. Infect Immun 2003
51
100

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
Davis J McCarthy, Yunshun Chen, Gordon K Smyth. Nucleic Acids Res 2012
100

Interleukin-27 Functional Duality Balances Leishmania Infectivity and Pathogenesis.
Abdollah Jafarzadeh, Maryam Nemati, Prashant Chauhan, Ashok Patidar, Arup Sarkar, Iraj Sharifi, Bhaskar Saha. Front Immunol 2020
16
100

A complete Leishmania donovani reference genome identifies novel genetic variations associated with virulence.
Patrick Lypaczewski, Johanna Hoshizaki, Wen-Wei Zhang, Laura-Isobel McCall, John Torcivia-Rodriguez, Vahan Simonyan, Amanpreet Kaur, Ken Dewar, Greg Matlashewski. Sci Rep 2018
26
100

Dual RNA-Seq of Mtb-Infected Macrophages In Vivo Reveals Ontologically Distinct Host-Pathogen Interactions.
Davide Pisu, Lu Huang, Jennifer K Grenier, David G Russell. Cell Rep 2020
77
100

Analysis of In Vivo Serpin Functions in Models of Inflammatory Vascular Disease.
Hao Chen, Sriram Ambadapadi, Erbin Dai, Liying Liu, Jordan R Yaron, Liqiang Zhang, Alexandra Lucas. Methods Mol Biol 2018
4
100

Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.
Maria Cecilia Fernandes, Laura A L Dillon, Ashton Trey Belew, Hector Corrada Bravo, David M Mosser, Najib M El-Sayed. mBio 2016
69
100

Is severe visceral leishmaniasis a systemic inflammatory response syndrome? A case control study.
Carlos Henrique Nery Costa, Guilherme Loureiro Werneck, Dorcas Lamounier Costa, Thiago Ayres Holanda, Guilherme Brasileiro Aguiar, Aline Santos Carvalho, Janaína Costa Cavalcanti, Loryenne Santos Santos. Rev Soc Bras Med Trop 2010
60
100

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Maxim V Kuleshov, Matthew R Jones, Andrew D Rouillard, Nicolas F Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L Jenkins, Kathleen M Jagodnik, Alexander Lachmann,[...]. Nucleic Acids Res 2016
100

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
100

Serine protease inhibitors and human wellbeing interplay: new insights for old friends.
Héla Mkaouar, Nizar Akermi, Aicha Kriaa, Anne-Laure Abraham, Amin Jablaoui, Souha Soussou, Raja Mokdad-Gargouri, Emmanuelle Maguin, Moez Rhimi. PeerJ 2019
15
100

Serpins in T cell immunity.
Michael Bots, Jan Paul Medema. J Leukoc Biol 2008
22
100

A new paradigm for leprosy diagnosis based on host gene expression.
Thyago Leal-Calvo, Charlotte Avanzi, Mayara Abud Mendes, Andrej Benjak, Philippe Busso, Roberta Olmo Pinheiro, Euzenir Nunes Sarno, Stewart Thomas Cole, Milton Ozório Moraes. PLoS Pathog 2021
6
100

Transcriptional Profiling in Experimental Visceral Leishmaniasis Reveals a Broad Splenic Inflammatory Environment that Conditions Macrophages toward a Disease-Promoting Phenotype.
Fanping Kong, Omar A Saldarriaga, Heidi Spratt, E Yaneth Osorio, Bruno L Travi, Bruce A Luxon, Peter C Melby. PLoS Pathog 2017
40
100

Global genome diversity of the Leishmania donovani complex.
Susanne U Franssen, Caroline Durrant, Olivia Stark, Bettina Moser, Tim Downing, Hideo Imamura, Jean-Claude Dujardin, Mandy J Sanders, Isabel Mauricio, Michael A Miles,[...]. Elife 2020
48
100

Preventive as well as therapeutic significances of linoleic acid in the containment of Leishmania donovani infection.
Sheetal Saini, Sarath Kumar Kottarath, Amit Kumar Dinda, Anuradha Dube, Amogh Anant Sahasrabuddhe, Chandreshwar Prasad Thakur, Madhusudan Bhat, Ambak Kumar Rai. Biochimie 2020
4
100

Neutrophil elastase promotes Leishmania donovani infection via interferon-β.
Bruna T Dias, Karina Luisa Dias-Teixeira, Joseane P Godinho, Marilia S Faria, Teresa Calegari-Silva, Maowia M Mukhtar, Ulisses Lopes, Jeremy C Mottram, Ana Paula C A Lima. FASEB J 2019
8
100

Transcriptome Analysis Identifies Immune Markers Related to Visceral Leishmaniasis Establishment in the Experimental Model of BALB/c Mice.
Maria Agallou, Evita Athanasiou, Olga Kammona, Spyros Tastsoglou, Artemis G Hatzigeorgiou, Costas Kiparissides, Evdokia Karagouni. Front Immunol 2019
4
100

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100

Blood Transcriptional Profiling Reveals Immunological Signatures of Distinct States of Infection of Humans with Leishmania infantum.
Luiz Gustavo Gardinassi, Gustavo Rocha Garcia, Carlos Henrique Nery Costa, Vladimir Costa Silva, Isabel Kinney Ferreira de Miranda Santos. PLoS Negl Trop Dis 2016
32
100

Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species.
Annie Rochette, Frédéric Raymond, Jean-Michel Ubeda, Martin Smith, Nadine Messier, Sébastien Boisvert, Philippe Rigault, Jacques Corbeil, Marc Ouellette, Barbara Papadopoulou. BMC Genomics 2008
104
100

Expression of indoleamine 2,3-dioxygenase by plasmacytoid dendritic cells in tumor-draining lymph nodes.
David H Munn, Madhav D Sharma, Deyan Hou, Babak Baban, Jeffrey R Lee, Scott J Antonia, Jane L Messina, Phillip Chandler, Pandelakis A Koni, Andrew L Mellor. J Clin Invest 2004
678
100

Meta-transcriptome Profiling of the Human-Leishmania braziliensis Cutaneous Lesion.
Stephen M Christensen, Laura A L Dillon, Lucas P Carvalho, Sara Passos, Fernanda O Novais, V Keith Hughitt, Daniel P Beiting, Edgar M Carvalho, Phillip Scott, Najib M El-Sayed,[...]. PLoS Negl Trop Dis 2016
44
100

The 'PAI-1 paradox' in vascular remodeling.
Isabel Diebold, Damir Kraicun, Steve Bonello, Agnes Görlach. Thromb Haemost 2008
65
100

ATP allosterically activates the human 5-lipoxygenase molecular mechanism of arachidonic acid and 5(S)-hydroperoxy-6(E),8(Z),11(Z),14(Z)-eicosatetraenoic acid.
Christopher J Smyrniotis, Shannon R Barbour, Zexin Xia, Mark S Hixon, Theodore R Holman. Biochemistry 2014
21
100

A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum.
François McNicoll, Jolyne Drummelsmith, Michaela Müller, Eric Madore, Nathalie Boilard, Marc Ouellette, Barbara Papadopoulou. Proteomics 2006
134
100

Crucial role of cytosolic tryparedoxin peroxidase in Leishmania donovani survival, drug response and virulence.
Jitesh P Iyer, Anees Kaprakkaden, Manohar L Choudhary, Chandrima Shaha. Mol Microbiol 2008
73
100

Tissue-specific transcriptomic changes associated with AmBisome® treatment of BALB/c mice with experimental visceral leishmaniasis.
Sarah Forrester, Karin Siefert, Helen Ashwin, Najmeeyah Brown, Andrea Zelmar, Sally James, Dimitris Lagos, Jon Timmis, Mitali Chatterjee, Jeremy C Mottram,[...]. Wellcome Open Res 2019
5
100


Reactive Center Loop (RCL) Peptides Derived from Serpins Display Independent Coagulation and Immune Modulating Activities.
Sriram Ambadapadi, Ganesh Munuswamy-Ramanujam, Donghang Zheng, Colin Sullivan, Erbin Dai, Sufi Morshed, Baron McFadden, Emily Feldman, Melissa Pinard, Robert McKenna,[...]. J Biol Chem 2016
33
100

Dual RNA-Seq Unveils Pseudomonas plecoglossicida htpG Gene Functions During Host-Pathogen Interactions With Epinephelus coioides.
Lixing Huang, Lingmin Zhao, Wenjia Liu, Xiaojin Xu, Yongquan Su, Yingxue Qin, Qingpi Yan. Front Immunol 2019
11
100

Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis.
Helen Ashwin, Karin Seifert, Sarah Forrester, Najmeeyah Brown, Sandy MacDonald, Sally James, Dimitris Lagos, Jon Timmis, Jeremy C Mottram, Simon L Croft,[...]. Wellcome Open Res 2019
17
100

Ensembl 2020.
Andrew D Yates, Premanand Achuthan, Wasiu Akanni, James Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Irina M Armean, Andrey G Azov, Ruth Bennett,[...]. Nucleic Acids Res 2020
800
100

Adaptation of Leishmania donovani to cutaneous and visceral environments: in vivo selection and proteomic analysis.
Laura-Isobel McCall, Wen-Wei Zhang, Kurt Dejgaard, Vanessa Diniz Atayde, Alexander Mazur, Shalindra Ranasinghe, Jing Liu, Martin Olivier, Tommy Nilsson, Greg Matlashewski. J Proteome Res 2015
15
100


Serum cytokines associated with severity and complications of kala-azar.
Dorcas L Costa, Regina L Rocha, Rayssa M A Carvalho, Adelino S Lima-Neto, Michael O Harhay, Carlos Henrique N Costa, Manoel Barral-Neto, Aldina P Barral. Pathog Glob Health 2013
68
100

Dual transcriptome analysis reveals differential gene expression modulation influenced by Leishmania arginase and host genetic background.
Juliana Ide Aoki, Sandra Marcia Muxel, Maria Fernanda Laranjeira-Silva, Ricardo Andrade Zampieri, Karl Erik Müller, Audun Helge Nerland, Lucile Maria Floeter-Winter. Microb Genom 2020
5
100

Causes and consequences of higher Leishmania infantum burden in patients with kala-azar: a study of 625 patients.
Danielle A Zacarias, Nuno Rolão, Flaviane A de Pinho, Ingridi Sene, Jailthon C Silva, Teresinha C Pereira, Dorcas L Costa, Carlos H N Costa. Trop Med Int Health 2017
14
100

Opposing biological functions of tryptophan catabolizing enzymes during intracellular infection.
Senad Divanovic, Nancy M Sawtell, Aurelien Trompette, Jamie I Warning, Alexandra Dias, Andrea M Cooper, George S Yap, Moshe Arditi, Kenichi Shimada, James B Duhadaway,[...]. J Infect Dis 2012
83
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.