A citation-based method for searching scientific literature

Charanya Kumar, Sahil Batra, Jack D Griffith, Dirk Remus. Elife 2021
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Replication stress interferes with histone recycling and predeposition marking of new histones.
Zuzana Jasencakova, Annette N D Scharf, Katrine Ask, Armelle Corpet, Axel Imhof, Geneviève Almouzni, Anja Groth. Mol Cell 2010
198
100


Linker histone H1 prevents R-loop accumulation and genome instability in heterochromatin.
Aleix Bayona-Feliu, Anna Casas-Lamesa, Oscar Reina, Jordi Bernués, Fernando Azorín. Nat Commun 2017
40
50

Combined inhibition of Aurora-A and ATR kinase results in regression of MYCN-amplified neuroblastoma.
Isabelle Roeschert, Evon Poon, Anton G Henssen, Heathcliff Dorado Garcia, Marco Gatti, Celeste Giansanti, Yann Jamin, Carsten P Ade, Peter Gallant, Christina Schülein-Völk,[...]. Nat Cancer 2021
9
50

Chromatin modifiers Mdm2 and RNF2 prevent RNA:DNA hybrids that impair DNA replication.
Ina Klusmann, Kai Wohlberedt, Anna Magerhans, Federico Teloni, Jan O Korbel, Matthias Altmeyer, Matthias Dobbelstein. Proc Natl Acad Sci U S A 2018
25
50

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
326
50

Mechanisms of transcription-replication collisions in bacteria.
Ekaterina V Mirkin, Sergei M Mirkin. Mol Cell Biol 2005
115
50

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
279
50

The Chromatin Remodeler ISW1 Is a Quality Control Factor that Surveys Nuclear mRNP Biogenesis.
Anna Babour, Qingtang Shen, Julien Dos-Santos, Struan Murray, Alexandre Gay, Drice Challal, Milo Fasken, Benoît Palancade, Anita Corbett, Domenico Libri,[...]. Cell 2016
20
50


Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
170
50

SIRT6 recruits SNF2H to DNA break sites, preventing genomic instability through chromatin remodeling.
Debra Toiber, Fabian Erdel, Karim Bouazoune, Dafne M Silberman, Lei Zhong, Peter Mulligan, Carlos Sebastian, Claudia Cosentino, Barbara Martinez-Pastor, Sofia Giacosa,[...]. Mol Cell 2013
222
50

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
200
50

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress.
Jérôme Poli, Christian-Benedikt Gerhold, Alessandro Tosi, Nicole Hustedt, Andrew Seeber, Ragna Sack, Franz Herzog, Philippe Pasero, Kenji Shimada, Karl-Peter Hopfner,[...]. Genes Dev 2016
67
50


Resolution of R-loops by INO80 promotes DNA replication and maintains cancer cell proliferation and viability.
Lisa Prendergast, Urszula L McClurg, Rossitsa Hristova, Rolando Berlinguer-Palmini, Sarah Greener, Katie Veitch, Inmaculada Hernandez, Philippe Pasero, Daniel Rico, Jonathan M G Higgins,[...]. Nat Commun 2020
15
50

Consequences and Resolution of Transcription-Replication Conflicts.
Maxime Lalonde, Manuel Trauner, Marcel Werner, Stephan Hamperl. Life (Basel) 2021
1
100

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
225
50

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
209
50


Histone chaperone FACT is essential to overcome replication stress in mammalian cells.
Laura Prendergast, Erin Hong, Alfiya Safina, Dante Poe, Katerina Gurova. Oncogene 2020
7
50

ARID1A regulates R-loop associated DNA replication stress.
Shuhe Tsai, Louis-Alexandre Fournier, Emily Yun-Chia Chang, James P Wells, Sean W Minaker, Yi Dan Zhu, Alan Ying-Hsu Wang, Yemin Wang, David G Huntsman, Peter C Stirling. PLoS Genet 2021
10
50

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
432
50

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
71
50

The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts.
Emilia Herrera-Moyano, Xénia Mergui, María L García-Rubio, Sonia Barroso, Andrés Aguilera. Genes Dev 2014
103
50

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
172
50

RNA polymerase II contributes to preventing transcription-mediated replication fork stalls.
Irene Felipe-Abrio, Juan Lafuente-Barquero, María L García-Rubio, Andrés Aguilera. EMBO J 2015
26
50

Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
78
50

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
286
50


Replication-Transcription Conflicts Generate R-Loops that Orchestrate Bacterial Stress Survival and Pathogenesis.
Kevin S Lang, Ashley N Hall, Christopher N Merrikh, Mark Ragheb, Hannah Tabakh, Alex J Pollock, Joshua J Woodward, Julia E Dreifus, Houra Merrikh. Cell 2017
107
50

R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes.
Konstantina Skourti-Stathaki, Elena Torlai Triglia, Marie Warburton, Philipp Voigt, Adrian Bird, Ana Pombo. Mol Cell 2019
33
50

Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.
Cigall Kadoch, Diana C Hargreaves, Courtney Hodges, Laura Elias, Lena Ho, Jeff Ranish, Gerald R Crabtree. Nat Genet 2013
692
50

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
130
50

R-Loop-Mediated ssDNA Breaks Accumulate Following Short-Term Exposure to the HDAC Inhibitor Romidepsin.
Maryam Safari, Thomas Litman, Robert W Robey, Andrés Aguilera, Arup R Chakraborty, William C Reinhold, Agnes Basseville, Lubov Petrukhin, Luigi Scotto, Owen A O'Connor,[...]. Mol Cancer Res 2021
2
50

The chromatin remodelling factor ATRX suppresses R-loops in transcribed telomeric repeats.
Diu Tt Nguyen, Hsiao Phin J Voon, Barbara Xella, Caroline Scott, David Clynes, Christian Babbs, Helena Ayyub, Jon Kerry, Jacqueline A Sharpe, Jackie A Sloane-Stanley,[...]. EMBO Rep 2017
54
50

The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
160
50

PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer.
Roman M Chabanon, Daphné Morel, Thomas Eychenne, Léo Colmet-Daage, Ilirjana Bajrami, Nicolas Dorvault, Marlène Garrido, Cornelia Meisenberg, Andrew Lamb, Carine Ngo,[...]. Cancer Res 2021
13
50

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
14
50

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
50

Chromatin conformation regulates the coordination between DNA replication and transcription.
Ricardo Almeida, José Miguel Fernández-Justel, Cristina Santa-María, Jean-Charles Cadoret, Laura Cano-Aroca, Rodrigo Lombraña, Gonzalo Herranz, Alessandra Agresti, María Gómez. Nat Commun 2018
39
50



Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition.
R Sternglanz, S DiNardo, K A Voelkel, Y Nishimura, Y Hirota, K Becherer, L Zumstein, J C Wang. Proc Natl Acad Sci U S A 1981
282
50

RECQ5 helicase promotes resolution of conflicts between replication and transcription in human cells.
Vaclav Urban, Jana Dobrovolna, Daniela Hühn, Jana Fryzelkova, Jiri Bartek, Pavel Janscak. J Cell Biol 2016
38
50

ADAR1 RNA editing enzyme regulates R-loop formation and genome stability at telomeres in cancer cells.
Yusuke Shiromoto, Masayuki Sakurai, Moeko Minakuchi, Kentaro Ariyoshi, Kazuko Nishikura. Nat Commun 2021
4
50

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants.
Peter C Stirling, Yujia A Chan, Sean W Minaker, Maria J Aristizabal, Irene Barrett, Payal Sipahimalani, Michael S Kobor, Philip Hieter. Genes Dev 2012
153
50

Yra1-bound RNA-DNA hybrids cause orientation-independent transcription-replication collisions and telomere instability.
María García-Rubio, Paula Aguilera, Juan Lafuente-Barquero, José F Ruiz, Marie-Noelle Simon, Vincent Geli, Ana G Rondón, Andrés Aguilera. Genes Dev 2018
38
50


XRN2 Links Transcription Termination to DNA Damage and Replication Stress.
Julio C Morales, Patricia Richard, Praveen L Patidar, Edward A Motea, Tuyen T Dang, James L Manley, David A Boothman. PLoS Genet 2016
55
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.