A citation-based method for searching scientific literature

Shashank Gandhi, Marianne E Bronner. Annu Rev Genet 2021
Times Cited: 3







List of co-cited articles
10 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder.
Hannah K Long, Marco Osterwalder, Ian C Welsh, Karissa Hansen, James O J Davies, Yiran E Liu, Mervenaz Koska, Alexander T Adams, Robert Aho, Neha Arora,[...]. Cell Stem Cell 2020
32
66

From Pioneer to Repressor: Bimodal foxd3 Activity Dynamically Remodels Neural Crest Regulatory Landscape In Vivo.
Martyna Lukoseviciute, Daria Gavriouchkina, Ruth M Williams, Tatiana Hochgreb-Hagele, Upeka Senanayake, Vanessa Chong-Morrison, Supat Thongjuea, Emmanouela Repapi, Adam Mead, Tatjana Sauka-Spengler. Dev Cell 2018
55
66

Reconstruction of the Global Neural Crest Gene Regulatory Network In Vivo.
Ruth M Williams, Ivan Candido-Ferreira, Emmanouela Repapi, Daria Gavriouchkina, Upeka Senanayake, Irving T C Ling, Jelena Telenius, Stephen Taylor, Jim Hughes, Tatjana Sauka-Spengler. Dev Cell 2019
65
66

Regulatory Logic Underlying Diversification of the Neural Crest.
Megan L Martik, Marianne E Bronner. Trends Genet 2017
92
66

Cell delamination in the mesencephalic neural fold and its implication for the origin of ectomesenchyme.
Raymond Teck Ho Lee, Hiroki Nagai, Yukiko Nakaya, Guojun Sheng, Paul A Trainor, James A Weston, Jean Paul Thiery. Development 2013
44
66

Reactivation of the pluripotency program precedes formation of the cranial neural crest.
Antoine Zalc, Rahul Sinha, Gunsagar S Gulati, Daniel J Wesche, Patrycja Daszczuk, Tomek Swigut, Irving L Weissman, Joanna Wysocka. Science 2021
40
66

Cranial neural crest and the building of the vertebrate head.
Fabio Santagati, Filippo M Rijli. Nat Rev Neurosci 2003
300
66

Establishing neural crest identity: a gene regulatory recipe.
Marcos Simões-Costa, Marianne E Bronner. Development 2015
346
66

The molecular basis of neural crest axial identity.
Megan Rothstein, Debadrita Bhattacharya, Marcos Simoes-Costa. Dev Biol 2018
36
66

Metabolic Reprogramming Promotes Neural Crest Migration via Yap/Tead Signaling.
Debadrita Bhattacharya, Ana Paula Azambuja, Marcos Simoes-Costa. Dev Cell 2020
44
66

The landscape of accessible chromatin in bovine oocytes and early embryos.
Hao Ming, Jiangwen Sun, Rolando Pasquariello, Lauren Gatenby, Jason R Herrick, Ye Yuan, Carlos R Pinto, Kenneth R Bondioli, Rebecca L Krisher, Zongliang Jiang. Epigenetics 2021
10
33

Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules.
Yukio Nakamura, Eduardo de Paiva Alves, Gert Jan C Veenstra, Stefan Hoppler. Development 2016
84
33

Regulatory Domains and Their Mechanisms.
Nezha S Benabdallah, Wendy A Bickmore. Cold Spring Harb Symp Quant Biol 2015
19
33


Two Enhancers Regulate HoxB Genes Expression During Retinoic Acid-Induced Early Embryonic Stem Cells Differentiation Through Long-Range Chromatin Interactions.
Jian Zheng, Guangsong Su, Wenbin Wang, Xueyuan Zhao, Man Liu, Jinfang Bi, Zhongfang Zhao, Jiandang Shi, Wange Lu, Lei Zhang. Stem Cells Dev 2021
2
50

Functional in vivo characterization of sox10 enhancers in neural crest and melanoma development.
Rebecca L Cunningham, Eva T Kramer, Sophia K DeGeorgia, Paula M Godoy, Anna P Zarov, Shayana Seneviratne, Vadim Grigura, Charles K Kaufman. Commun Biol 2021
2
50


Differential contribution of p300 and CBP to regulatory element acetylation in mESCs.
Sara Martire, Jennifer Nguyen, Aishwarya Sundaresan, Laura A Banaszynski. BMC Mol Cell Biol 2020
20
33

Vertebrate limb bud development: moving towards integrative analysis of organogenesis.
Rolf Zeller, Javier López-Ríos, Aimée Zuniga. Nat Rev Genet 2009
301
33


AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration.
Arica Beisaw, Carsten Kuenne, Stefan Guenther, Julia Dallmann, Chi-Chung Wu, Mette Bentsen, Mario Looso, Didier Y R Stainier. Circ Res 2020
42
33


Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.
Yingxi Cao, Yu Xia, Joseph J Balowski, Jianhong Ou, Lingyun Song, Alexias Safi, Timothy Curtis, Gregory E Crawford, Kenneth D Poss, Jingli Cao. Development 2022
2
50

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.
Darren A Cusanovich, Riza Daza, Andrew Adey, Hannah A Pliner, Lena Christiansen, Kevin L Gunderson, Frank J Steemers, Cole Trapnell, Jay Shendure. Science 2015
593
33

An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Chuanyu Liu, Mingyue Wang, Xiaoyu Wei, Liang Wu, Jiangshan Xu, Xi Dai, Jun Xia, Mengnan Cheng, Yue Yuan, Pengfan Zhang,[...]. Sci Data 2019
41
33

Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility.
Caleb A Lareau, Fabiana M Duarte, Jennifer G Chew, Vinay K Kartha, Zach D Burkett, Andrew S Kohlway, Dmitry Pokholok, Martin J Aryee, Frank J Steemers, Ronald Lebofsky,[...]. Nat Biotechnol 2019
136
33


Analysis of accessible chromatin landscape in the inner cell mass and trophectoderm of human blastocysts.
Min Yang, Xin Tao, Shiny Titus, Tianhua Zhao, Richard T Scott, Emre Seli. Mol Hum Reprod 2020
4
33


Gene Regulatory and Expression Differences between Mouse and Pig Limb Buds Provide Insights into the Evolutionary Emergence of Artiodactyl Traits.
Virginie Tissières, Florian Geier, Barbara Kessler, Eckhard Wolf, Rolf Zeller, Javier Lopez-Rios. Cell Rep 2020
10
33

Spatial Organization of Chromatin: Emergence of Chromatin Structure During Development.
Rajarshi P Ghosh, Barbara J Meyer. Annu Rev Cell Dev Biol 2021
14
33

Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes.
Sakthi D Moorthy, Scott Davidson, Virlana M Shchuka, Gurdeep Singh, Nakisa Malek-Gilani, Lida Langroudi, Alexandre Martchenko, Vincent So, Neil N Macpherson, Jennifer A Mitchell. Genome Res 2017
85
33

Sex-specific epigenetic profile of inner cell mass of mice conceived in vivo or by IVF.
Elena Ruggeri, Saúl Lira-Albarrán, Edward J Grow, Xiaowei Liu, Royce Harner, Emin Maltepe, Miguel Ramalho-Santos, Annemarie Donjacour, Paolo Rinaudo. Mol Hum Reprod 2020
6
33


From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Feng Yan, David R Powell, David J Curtis, Nicholas C Wong. Genome Biol 2020
99
33

EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation.
Priscillia Lhoumaud, Gunjan Sethia, Franco Izzo, Theodore Sakellaropoulos, Valentina Snetkova, Simon Vidal, Sana Badri, Macintosh Cornwell, Dafne Campigli Di Giammartino, Kyu-Tae Kim,[...]. Genome Biol 2019
14
33

ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the Drosophila blastoderm.
Marta Bozek, Roberto Cortini, Andrea Ennio Storti, Ulrich Unnerstall, Ulrike Gaul, Nicolas Gompel. Genome Res 2019
23
33


Genome and epigenome engineering CRISPR toolkit for in vivo modulation of cis-regulatory interactions and gene expression in the chicken embryo.
Ruth M Williams, Upeka Senanayake, Mara Artibani, Gunes Taylor, Daniel Wells, Ahmed Ashour Ahmed, Tatjana Sauka-Spengler. Development 2018
36
33


A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility.
Wei Xu, Yi Wen, Yingying Liang, Qiushi Xu, Xuefei Wang, Wenfei Jin, Xi Chen. Nat Protoc 2021
9
33

Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration.
John D Thompson, Jianhong Ou, Nutishia Lee, Kwangdeok Shin, Valentina Cigliola, Lingyun Song, Gregory E Crawford, Junsu Kang, Kenneth D Poss. Development 2020
19
33

Chromatin accessibility and histone acetylation in the regulation of competence in early development.
Melody Esmaeili, Shelby A Blythe, John W Tobias, Kai Zhang, Jing Yang, Peter S Klein. Dev Biol 2020
16
33

CUT&Tag for efficient epigenomic profiling of small samples and single cells.
Hatice S Kaya-Okur, Steven J Wu, Christine A Codomo, Erica S Pledger, Terri D Bryson, Jorja G Henikoff, Kami Ahmad, Steven Henikoff. Nat Commun 2019
489
33

Nervous System Regionalization Entails Axial Allocation before Neural Differentiation.
Vicki Metzis, Sebastian Steinhauser, Edvinas Pakanavicius, Mina Gouti, Despina Stamataki, Kenzo Ivanovitch, Thomas Watson, Teresa Rayon, S Neda Mousavy Gharavy, Robin Lovell-Badge,[...]. Cell 2018
76
33

A map of cis-regulatory elements and 3D genome structures in zebrafish.
Hongbo Yang, Yu Luan, Tingting Liu, Hyung Joo Lee, Li Fang, Yanli Wang, Xiaotao Wang, Bo Zhang, Qiushi Jin, Khai Chung Ang,[...]. Nature 2020
33
33

Characterising open chromatin in chick embryos identifies cis-regulatory elements important for paraxial mesoderm formation and axis extension.
Gi Fay Mok, Leighton Folkes, Shannon A Weldon, Eirini Maniou, Victor Martinez-Heredia, Alice M Godden, Ruth M Williams, Tatjana Sauka-Spengler, Grant N Wheeler, Simon Moxon,[...]. Nat Commun 2021
3
33

Uncovering the mesendoderm gene regulatory network through multi-omic data integration.
Camden Jansen, Kitt D Paraiso, Jeff J Zhou, Ira L Blitz, Margaret B Fish, Rebekah M Charney, Jin Sun Cho, Yuuri Yasuoka, Norihiro Sudou, Ann Rose Bright,[...]. Cell Rep 2022
5
33

The cis-regulatory dynamics of embryonic development at single-cell resolution.
Darren A Cusanovich, James P Reddington, David A Garfield, Riza M Daza, Delasa Aghamirzaie, Raquel Marco-Ferreres, Hannah A Pliner, Lena Christiansen, Xiaojie Qiu, Frank J Steemers,[...]. Nature 2018
171
33

Assessment of computational methods for the analysis of single-cell ATAC-seq data.
Huidong Chen, Caleb Lareau, Tommaso Andreani, Michael E Vinyard, Sara P Garcia, Kendell Clement, Miguel A Andrade-Navarro, Jason D Buenrostro, Luca Pinello. Genome Biol 2019
96
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.