A citation-based method for searching scientific literature

Haiyang Yun, Nisha Narayan, Shabana Vohra, George Giotopoulos, Annalisa Mupo, Pedro Madrigal, Daniel Sasca, David Lara-Astiaso, Sarah J Horton, Shuchi Agrawal-Singh, Eshwar Meduri, Faisal Basheer, Ludovica Marando, Malgorzata Gozdecka, Oliver M Dovey, Aracely Castillo-Venzor, Xiaonan Wang, Paolo Gallipoli, Carsten Müller-Tidow, Cameron S Osborne, George S Vassiliou, Brian J P Huntly. Nat Genet 2021
Times Cited: 7







List of co-cited articles
45 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.
Timothy J Ley, Christopher Miller, Li Ding, Benjamin J Raphael, Andrew J Mungall, A Gordon Robertson, Katherine Hoadley, Timothy J Triche, Peter W Laird, Jack D Baty,[...]. N Engl J Med 2013
71

Sequentially inducible mouse models reveal that Npm1 mutation causes malignant transformation of Dnmt3a-mutant clonal hematopoiesis.
Matthew A Loberg, Rebecca K Bell, Leslie O Goodwin, Elizabeth Eudy, Linde A Miles, Jennifer M SanMiguel, Kira Young, David E Bergstrom, Ross L Levine, Rebekka K Schneider,[...]. Leukemia 2019
53
57

Clonal evolution of preleukemic hematopoietic stem cells precedes human acute myeloid leukemia.
Max Jan, Thomas M Snyder, M Ryan Corces-Zimmerman, Paresh Vyas, Irving L Weissman, Stephen R Quake, Ravindra Majeti. Sci Transl Med 2012
526
42

Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia.
Liran I Shlush, Sasan Zandi, Amanda Mitchell, Weihsu Claire Chen, Joseph M Brandwein, Vikas Gupta, James A Kennedy, Aaron D Schimmer, Andre C Schuh, Karen W Yee,[...]. Nature 2014
983
42

Age-related clonal hematopoiesis associated with adverse outcomes.
Siddhartha Jaiswal, Pierre Fontanillas, Jason Flannick, Alisa Manning, Peter V Grauman, Brenton G Mar, R Coleman Lindsley, Craig H Mermel, Noel Burtt, Alejandro Chavez,[...]. N Engl J Med 2014
42

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution.
M Ryan Corces, Jason D Buenrostro, Beijing Wu, Peyton G Greenside, Steven M Chan, Julie L Koenig, Michael P Snyder, Jonathan K Pritchard, Anshul Kundaje, William J Greenleaf,[...]. Nat Genet 2016
542
42

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
42

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
42

DNMT3A mutations in acute myeloid leukemia.
Timothy J Ley, Li Ding, Matthew J Walter, Michael D McLellan, Tamara Lamprecht, David E Larson, Cyriac Kandoth, Jacqueline E Payton, Jack Baty, John Welch,[...]. N Engl J Med 2010
28

Leukemia-initiating cells from some acute myeloid leukemia patients with mutated nucleophosmin reside in the CD34(-) fraction.
David C Taussig, Jacques Vargaftig, Farideh Miraki-Moud, Emmanuel Griessinger, Kirsty Sharrock, Tina Luke, Debra Lillington, Heather Oakervee, Jamie Cavenagh, Samir G Agrawal,[...]. Blood 2010
257
28

Dnmt3a is essential for hematopoietic stem cell differentiation.
Grant A Challen, Deqiang Sun, Mira Jeong, Min Luo, Jaroslav Jelinek, Jonathan S Berg, Christoph Bock, Aparna Vasanthakumar, Hongcang Gu, Yuanxin Xi,[...]. Nat Genet 2011
723
28

Mutant nucleophosmin and cooperating pathways drive leukemia initiation and progression in mice.
George S Vassiliou, Jonathan L Cooper, Roland Rad, Juan Li, Stephen Rice, Anthony Uren, Lena Rad, Peter Ellis, Rob Andrews, Ruby Banerjee,[...]. Nat Genet 2011
153
28

Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence.
Giulio Genovese, Anna K Kähler, Robert E Handsaker, Johan Lindberg, Samuel A Rose, Samuel F Bakhoum, Kimberly Chambert, Eran Mick, Benjamin M Neale, Menachem Fromer,[...]. N Engl J Med 2014
28

Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformation.
Allison Mayle, Liubin Yang, Benjamin Rodriguez, Ting Zhou, Edmund Chang, Choladda V Curry, Grant A Challen, Wei Li, David Wheeler, Vivienne I Rebel,[...]. Blood 2015
165
28

MEF2 and the tumorigenic process, hic sunt leones.
Eros Di Giorgio, Wayne W Hancock, Claudio Brancolini. Biochim Biophys Acta Rev Cancer 2018
37
28

Genomic Classification and Prognosis in Acute Myeloid Leukemia.
Elli Papaemmanuil, Moritz Gerstung, Lars Bullinger, Verena I Gaidzik, Peter Paschka, Nicola D Roberts, Nicola E Potter, Michael Heuser, Felicitas Thol, Niccolo Bolli,[...]. N Engl J Med 2016
28

Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia.
Xiao-Jing Yan, Jie Xu, Zhao-Hui Gu, Chun-Ming Pan, Gang Lu, Yang Shen, Jing-Yi Shi, Yong-Mei Zhu, Lin Tang, Xiao-Wei Zhang,[...]. Nat Genet 2011
571
28

The R882H DNMT3A mutation associated with AML dominantly inhibits wild-type DNMT3A by blocking its ability to form active tetramers.
David A Russler-Germain, David H Spencer, Margaret A Young, Tamara L Lamprecht, Christopher A Miller, Robert Fulton, Matthew R Meyer, Petra Erdmann-Gilmore, R Reid Townsend, Richard K Wilson,[...]. Cancer Cell 2014
286
28

A DNMT3A mutation common in AML exhibits dominant-negative effects in murine ES cells.
Soo Jin Kim, Hongbo Zhao, Swanand Hardikar, Anup Kumar Singh, Margaret A Goodell, Taiping Chen. Blood 2013
123
28

The origin and evolution of mutations in acute myeloid leukemia.
John S Welch, Timothy J Ley, Daniel C Link, Christopher A Miller, David E Larson, Daniel C Koboldt, Lukas D Wartman, Tamara L Lamprecht, Fulu Liu, Jun Xia,[...]. Cell 2012
28

Knock-in of an internal tandem duplication mutation into murine FLT3 confers myeloproliferative disease in a mouse model.
Li Li, Obdulio Piloto, Ho Bao Nguyen, Kathleen Greenberg, Kogo Takamiya, Frederick Racke, David Huso, Donald Small. Blood 2008
108
28

The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
Christina Schessl, Vijay P S Rawat, Monica Cusan, Aniruddha Deshpande, Tobias M Kohl, Patricia M Rosten, Karsten Spiekermann, R Keith Humphries, Susanne Schnittger, Wolfgang Kern,[...]. J Clin Invest 2005
166
28

Acute Myeloid Leukemia.
Hartmut Döhner, Daniel J Weisdorf, Clara D Bloomfield. N Engl J Med 2015
28

Genetic and epigenetic heterogeneity in acute myeloid leukemia.
Sheng Li, Christopher E Mason, Ari Melnick. Curr Opin Genet Dev 2016
83
28

Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation.
Maria E Figueroa, Omar Abdel-Wahab, Chao Lu, Patrick S Ward, Jay Patel, Alan Shih, Yushan Li, Neha Bhagwat, Aparna Vasanthakumar, Hugo F Fernandez,[...]. Cancer Cell 2010
28

The cytoplasmic NPM mutant induces myeloproliferation in a transgenic mouse model.
Ke Cheng, Paolo Sportoletti, Keisuke Ito, John G Clohessy, Julie Teruya-Feldstein, Jeffery L Kutok, Pier Paolo Pandolfi. Blood 2010
66
28

C-KIT mutation cooperates with full-length AML1-ETO to induce acute myeloid leukemia in mice.
Yue-Ying Wang, Li-Juan Zhao, Chuan-Feng Wu, Ping Liu, Lin Shi, Yang Liang, Shu-Min Xiong, Jian-Qing Mi, Zhu Chen, Ruibao Ren,[...]. Proc Natl Acad Sci U S A 2011
98
28

Microenvironment determines lineage fate in a human model of MLL-AF9 leukemia.
Junping Wei, Mark Wunderlich, Catherine Fox, Sara Alvarez, Juan C Cigudosa, Jamie S Wilhelm, Yi Zheng, Jose A Cancelas, Yi Gu, Michael Jansen,[...]. Cancer Cell 2008
240
28

DNMT3A and TET2 compete and cooperate to repress lineage-specific transcription factors in hematopoietic stem cells.
Xiaotian Zhang, Jianzhong Su, Mira Jeong, Myunggon Ko, Yun Huang, Hyun Jung Park, Anna Guzman, Yong Lei, Yung-Hsin Huang, Anjana Rao,[...]. Nat Genet 2016
148
28

Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation.
Kelly Moran-Crusio, Linsey Reavie, Alan Shih, Omar Abdel-Wahab, Delphine Ndiaye-Lobry, Camille Lobry, Maria E Figueroa, Aparna Vasanthakumar, Jay Patel, Xinyang Zhao,[...]. Cancer Cell 2011
876
28

The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia.
Daniel A Arber, Attilio Orazi, Robert Hasserjian, Jürgen Thiele, Michael J Borowitz, Michelle M Le Beau, Clara D Bloomfield, Mario Cazzola, James W Vardiman. Blood 2016
28

MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L.
Kathrin M Bernt, Nan Zhu, Amit U Sinha, Sridhar Vempati, Joerg Faber, Andrei V Krivtsov, Zhaohui Feng, Natalie Punt, Amanda Daigle, Lars Bullinger,[...]. Cancer Cell 2011
615
28

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
28

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
28

Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1.
Julia Minderjahn, Andreas Schmidt, Andreas Fuchs, Rudolf Schill, Johanna Raithel, Magda Babina, Christian Schmidl, Claudia Gebhard, Sandra Schmidhofer, Karina Mendes,[...]. Nat Commun 2020
38
28

Minimal PU.1 reduction induces a preleukemic state and promotes development of acute myeloid leukemia.
Britta Will, Thomas O Vogler, Swathi Narayanagari, Boris Bartholdy, Tihomira I Todorova, Mariana da Silva Ferreira, Jiahao Chen, Yiting Yu, Jillian Mayer, Laura Barreyro,[...]. Nat Med 2015
87
28

Subtype-specific regulatory network rewiring in acute myeloid leukemia.
Salam A Assi, Maria Rosaria Imperato, Daniel J L Coleman, Anna Pickin, Sandeep Potluri, Anetta Ptasinska, Paulynn Suyin Chin, Helen Blair, Pierre Cauchy, Sally R James,[...]. Nat Genet 2019
81
28

The Molecular Signatures Database (MSigDB) hallmark gene set collection.
Arthur Liberzon, Chet Birger, Helga Thorvaldsdóttir, Mahmoud Ghandi, Jill P Mesirov, Pablo Tamayo. Cell Syst 2015
28

Transcriptional Addiction in Cancer.
James E Bradner, Denes Hnisz, Richard A Young. Cell 2017
527
28

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
28

Identification of a novel enhancer of CEBPE essential for granulocytic differentiation.
Pavithra Shyamsunder, Mahalakshmi Shanmugasundaram, Anand Mayakonda, Pushkar Dakle, Weoi Woon Teoh, Lin Han, Deepika Kanojia, Mei Chee Lim, Melissa Fullwood, Omer An,[...]. Blood 2019
17
28

Acute myeloid leukaemia.
Asim Khwaja, Magnus Bjorkholm, Rosemary E Gale, Ross L Levine, Craig T Jordan, Gerhard Ehninger, Clara D Bloomfield, Eli Estey, Alan Burnett, Jan J Cornelissen,[...]. Nat Rev Dis Primers 2016
173
28

ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency.
Zhendong Cao, Krista A Budinich, Hua Huang, Diqiu Ren, Bin Lu, Zhen Zhang, Qingzhou Chen, Yeqiao Zhou, Yu-Han Huang, Fatemeh Alikarami,[...]. Mol Cell 2021
9
28

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
28

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
28

Age-related mutations associated with clonal hematopoietic expansion and malignancies.
Mingchao Xie, Charles Lu, Jiayin Wang, Michael D McLellan, Kimberly J Johnson, Michael C Wendl, Joshua F McMichael, Heather K Schmidt, Venkata Yellapantula, Christopher A Miller,[...]. Nat Med 2014
14

Structural basis for DNMT3A-mediated de novo DNA methylation.
Zhi-Min Zhang, Rui Lu, Pengcheng Wang, Yang Yu, Dongliang Chen, Linfeng Gao, Shuo Liu, Debin Ji, Scott B Rothbart, Yinsheng Wang,[...]. Nature 2018
134
14

Mutant NPM1 Maintains the Leukemic State through HOX Expression.
Lorenzo Brunetti, Michael C Gundry, Daniele Sorcini, Anna G Guzman, Yung-Hsin Huang, Raghav Ramabadran, Ilaria Gionfriddo, Federica Mezzasoma, Francesca Milano, Behnam Nabet,[...]. Cancer Cell 2018
127
14

Simplified murine multipotent progenitor isolation scheme: Establishing a consensus approach for multipotent progenitor identification.
Grant A Challen, Eric M Pietras, Nina Cabezas Wallscheid, Robert A J Signer. Exp Hematol 2021
9
14

Acute myeloid leukemia carrying cytoplasmic/mutated nucleophosmin (NPMc+ AML): biologic and clinical features.
Brunangelo Falini, Ildo Nicoletti, Massimo F Martelli, Cristina Mecucci. Blood 2007
379
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.