A citation-based method for searching scientific literature

Vinay V Eapen, Sharan Swarup, Melissa J Hoyer, Joao A Paulo, J Wade Harper. Elife 2021
Times Cited: 2







List of co-cited articles
10 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Autophagy sequesters damaged lysosomes to control lysosomal biogenesis and kidney injury.
Ikuko Maejima, Atsushi Takahashi, Hiroko Omori, Tomonori Kimura, Yoshitsugu Takabatake, Tatsuya Saitoh, Akitsugu Yamamoto, Maho Hamasaki, Takeshi Noda, Yoshitaka Isaka,[...]. EMBO J 2013
277
100

TRIMs and Galectins Globally Cooperate and TRIM16 and Galectin-3 Co-direct Autophagy in Endomembrane Damage Homeostasis.
Santosh Chauhan, Suresh Kumar, Ashish Jain, Marisa Ponpuak, Michal H Mudd, Tomonori Kimura, Seong Won Choi, Ryan Peters, Michael Mandell, Jack-Ansgar Bruun,[...]. Dev Cell 2016
188
100

Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion.
Teresa L M Thurston, Michal P Wandel, Natalia von Muhlinen, Agnes Foeglein, Felix Randow. Nature 2012
603
100

Galectins Control mTOR in Response to Endomembrane Damage.
Jingyue Jia, Yakubu Princely Abudu, Aurore Claude-Taupin, Yuexi Gu, Suresh Kumar, Seong Won Choi, Ryan Peters, Michal H Mudd, Lee Allers, Michelle Salemi,[...]. Mol Cell 2018
92
100


The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria.
Teresa L M Thurston, Grigory Ryzhakov, Stuart Bloor, Natalia von Muhlinen, Felix Randow. Nat Immunol 2009
596
100

ESCRT-mediated lysosome repair precedes lysophagy and promotes cell survival.
Maja Radulovic, Kay O Schink, Eva M Wenzel, Viola Nähse, Antonino Bongiovanni, Frank Lafont, Harald Stenmark. EMBO J 2018
86
100

Triggered recruitment of ESCRT machinery promotes endolysosomal repair.
Michael L Skowyra, Paul H Schlesinger, Teresa V Naismith, Phyllis I Hanson. Science 2018
132
100

Sensitive detection of lysosomal membrane permeabilization by lysosomal galectin puncta assay.
Sonja Aits, Jennifer Kricker, Bin Liu, Anne-Marie Ellegaard, Saara Hämälistö, Siri Tvingsholm, Elisabeth Corcelle-Termeau, Søren Høgh, Thomas Farkas, Anna Holm Jonassen,[...]. Autophagy 2015
157
100


The Lysosome as a Regulatory Hub.
Rushika M Perera, Roberto Zoncu. Annu Rev Cell Dev Biol 2016
219
50

Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.
Elizabeth T Cirulli, Brittany N Lasseigne, Slavé Petrovski, Peter C Sapp, Patrick A Dion, Claire S Leblond, Julien Couthouis, Yi-Fan Lu, Quanli Wang, Brian J Krueger,[...]. Science 2015
572
50


mTOR Signaling in Growth, Metabolism, and Disease.
Robert A Saxton, David M Sabatini. Cell 2017
50

ALS- and FTD-associated missense mutations in TBK1 differentially disrupt mitophagy.
Olivia Harding, Chantell S Evans, Junqiang Ye, Jonah Cheung, Tom Maniatis, Erika L F Holzbaur. Proc Natl Acad Sci U S A 2021
5
50

Repair or Lysophagy: Dealing with Damaged Lysosomes.
Chrisovalantis Papadopoulos, Bojana Kravic, Hemmo Meyer. J Mol Biol 2020
41
50

AMPK, a Regulator of Metabolism and Autophagy, Is Activated by Lysosomal Damage via a Novel Galectin-Directed Ubiquitin Signal Transduction System.
Jingyue Jia, Bhawana Bissa, Lukas Brecht, Lee Allers, Seong Won Choi, Yuexi Gu, Mark Zbinden, Mark R Burge, Graham Timmins, Kenneth Hallows,[...]. Mol Cell 2020
39
50


Recruitment and Activation of the ULK1/Atg1 Kinase Complex in Selective Autophagy.
Eleonora Turco, Dorotea Fracchiolla, Sascha Martens. J Mol Biol 2020
40
50

Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
50

IKK-i and TBK-1 are enzymatically distinct from the homologous enzyme IKK-2: comparative analysis of recombinant human IKK-i, TBK-1, and IKK-2.
Nandini Kishore, Q Khai Huynh, Sumathy Mathialagan, Troii Hall, Sharon Rouw, David Creely, Gary Lange, James Caroll, Beverley Reitz, Ann Donnelly,[...]. J Biol Chem 2002
104
50

Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis.
Alban Ordureau, Shireen A Sarraf, David M Duda, Jin-Mi Heo, Mark P Jedrychowski, Vladislav O Sviderskiy, Jennifer L Olszewski, James T Koerber, Tiao Xie, Sean A Beausoleil,[...]. Mol Cell 2014
357
50

Intralysosomal hydrolysis of glycyl-L-phenylalanine 2-naphthylamide.
M Jadot, C Colmant, S Wattiaux-De Coninck, R Wattiaux. Biochem J 1984
100
50

Integrated proteogenetic analysis reveals the landscape of a mitochondrial-autophagosome synapse during PARK2-dependent mitophagy.
Jin-Mi Heo, Nathan J Harper, Joao A Paulo, Mamie Li, Qikai Xu, Margaret Coughlin, Stephen J Elledge, J Wade Harper. Sci Adv 2019
22
50


The ATG conjugation systems in autophagy.
Noboru Mizushima. Curr Opin Cell Biol 2020
91
50

A small-molecule inhibitor of the ubiquitin activating enzyme for cancer treatment.
Marc L Hyer, Michael A Milhollen, Jeff Ciavarri, Paul Fleming, Tary Traore, Darshan Sappal, Jessica Huck, Judy Shi, James Gavin, Jim Brownell,[...]. Nat Med 2018
118
50

The Autophagy Receptor TAX1BP1 and the Molecular Motor Myosin VI Are Required for Clearance of Salmonella Typhimurium by Autophagy.
David A Tumbarello, Paul T Manna, Mark Allen, Mark Bycroft, Susan D Arden, John Kendrick-Jones, Folma Buss. PLoS Pathog 2015
114
50

Endolysosomes Are the Principal Intracellular Sites of Acid Hydrolase Activity.
Nicholas A Bright, Luther J Davis, J Paul Luzio. Curr Biol 2016
98
50

RAB7A phosphorylation by TBK1 promotes mitophagy via the PINK-PARKIN pathway.
J-M Heo, A Ordureau, S Swarup, J A Paulo, K Shen, D M Sabatini, J W Harper. Sci Adv 2018
55
50


Global Landscape and Dynamics of Parkin and USP30-Dependent Ubiquitylomes in iNeurons during Mitophagic Signaling.
Alban Ordureau, Joao A Paulo, Jiuchun Zhang, Heeseon An, Kirby N Swatek, Joe R Cannon, Qiaoqiao Wan, David Komander, J Wade Harper. Mol Cell 2020
48
50


The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher,[...]. Nucleic Acids Res 2019
50

Mechanisms of Selective Autophagy.
Trond Lamark, Terje Johansen. Annu Rev Cell Dev Biol 2021
9
50

Targeting the AAA ATPase p97 as an Approach to Treat Cancer through Disruption of Protein Homeostasis.
Daniel J Anderson, Ronan Le Moigne, Stevan Djakovic, Brajesh Kumar, Julie Rice, Steve Wong, Jinhai Wang, Bing Yao, Eduardo Valle, Szerenke Kiss von Soly,[...]. Cancer Cell 2015
195
50

Dynamics of PARKIN-Dependent Mitochondrial Ubiquitylation in Induced Neurons and Model Systems Revealed by Digital Snapshot Proteomics.
Alban Ordureau, Joao A Paulo, Wei Zhang, Tim Ahfeldt, Jiuchun Zhang, Erin F Cohn, Zhonggang Hou, Jin-Mi Heo, Lee L Rubin, Sachdev S Sidhu,[...]. Mol Cell 2018
79
50

Quantitative mass spectrometry-based multiplexing compares the abundance of 5000 S. cerevisiae proteins across 10 carbon sources.
Joao A Paulo, Jeremy D O'Connell, Robert A Everley, Jonathon O'Brien, Micah A Gygi, Steven P Gygi. J Proteomics 2016
87
50

Preserving Lysosomal Function in the Aging Brain: Insights from Neurodegeneration.
Wesley Peng, Georgia Minakaki, Maria Nguyen, Dimitri Krainc. Neurotherapeutics 2019
22
50

Lysosomal metabolomics reveals V-ATPase- and mTOR-dependent regulation of amino acid efflux from lysosomes.
Monther Abu-Remaileh, Gregory A Wyant, Choah Kim, Nouf N Laqtom, Maria Abbasi, Sze Ham Chan, Elizaveta Freinkman, David M Sabatini. Science 2017
185
50

Galectin-3 endocytosis by carbohydrate independent and dependent pathways in different macrophage like cell types.
Adriana Lepur, Michael C Carlsson, Ruđer Novak, Jerka Dumić, Ulf J Nilsson, Hakon Leffler. Biochim Biophys Acta 2012
38
50

VCP/p97 cooperates with YOD1, UBXD1 and PLAA to drive clearance of ruptured lysosomes by autophagy.
Chrisovalantis Papadopoulos, Philipp Kirchner, Monika Bug, Daniel Grum, Lisa Koerver, Nina Schulze, Robert Poehler, Alina Dressler, Sven Fengler, Khalid Arhzaouy,[...]. EMBO J 2017
143
50

MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes.
Graeme C McAlister, David P Nusinow, Mark P Jedrychowski, Martin Wühr, Edward L Huttlin, Brian K Erickson, Ramin Rad, Wilhelm Haas, Steven P Gygi. Anal Chem 2014
585
50

LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury.
Shuhei Nakamura, Saki Shigeyama, Satoshi Minami, Takayuki Shima, Shiori Akayama, Tomoki Matsuda, Alessandra Esposito, Gennaro Napolitano, Akiko Kuma, Tomoko Namba-Hamano,[...]. Nat Cell Biol 2020
26
50

Galectin-3 Coordinates a Cellular System for Lysosomal Repair and Removal.
Jingyue Jia, Aurore Claude-Taupin, Yuexi Gu, Seong Won Choi, Ryan Peters, Bhawana Bissa, Michal H Mudd, Lee Allers, Sandeep Pallikkuth, Keith A Lidke,[...]. Dev Cell 2020
54
50

A tissue-specific atlas of mouse protein phosphorylation and expression.
Edward L Huttlin, Mark P Jedrychowski, Joshua E Elias, Tapasree Goswami, Ramin Rad, Sean A Beausoleil, Judit Villén, Wilhelm Haas, Mathew E Sowa, Steven P Gygi. Cell 2010
50

Apical sorting by galectin-3-dependent glycoprotein clustering.
Delphine Delacour, Christoph Greb, Annett Koch, Emma Salomonsson, Hakon Leffler, Andre Le Bivic, Ralf Jacob. Traffic 2007
124
50

The ubiquitin-conjugating enzyme UBE2QL1 coordinates lysophagy in response to endolysosomal damage.
Lisa Koerver, Chrisovalantis Papadopoulos, Bin Liu, Bojana Kravic, Giulia Rota, Lukas Brecht, Tineke Veenendaal, Mira Polajnar, Anika Bluemke, Michael Ehrmann,[...]. EMBO Rep 2019
29
50

Ubiquitination of exposed glycoproteins by SCFFBXO27 directs damaged lysosomes for autophagy.
Yukiko Yoshida, Sayaka Yasuda, Toshiharu Fujita, Maho Hamasaki, Arisa Murakami, Junko Kawawaki, Kazuhiro Iwai, Yasushi Saeki, Tamotsu Yoshimori, Noriyuki Matsuda,[...]. Proc Natl Acad Sci U S A 2017
52
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.