A citation-based method for searching scientific literature

Bhushan L Thakur, Anagh Ray, Christophe E Redon, Mirit I Aladjem. Trends Genet 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication.
Weitao Wang, Kyle N Klein, Karel Proesmans, Hongbo Yang, Claire Marchal, Xiaopeng Zhu, Tyler Borrman, Alex Hastie, Zhiping Weng, John Bechhoefer,[...]. Mol Cell 2021
23
100

Replication Fork Reversal: Players and Guardians.
Annabel Quinet, Delphine Lemaçon, Alessandro Vindigni. Mol Cell 2017
132
100

Purification of proteins on newly synthesized DNA using iPOND.
Huzefa Dungrawala, David Cortez. Methods Mol Biol 2015
32
100

Endogenous DNA Damage as a Source of Genomic Instability in Cancer.
Anthony Tubbs, André Nussenzweig. Cell 2017
615
100

DNA Fiber Analysis: Mind the Gap!
Annabel Quinet, Denisse Carvajal-Maldonado, Delphine Lemacon, Alessandro Vindigni. Methods Enzymol 2017
66
100

DNA secondary structure at chromosomal fragile sites in human disease.
Ryan G Thys, Christine E Lehman, Levi C T Pierce, Yuh-Hwa Wang. Curr Genomics 2015
37
100

DNA Replication Stress and Chromosomal Instability: Dangerous Liaisons.
Therese Wilhelm, Maha Said, Valeria Naim. Genes (Basel) 2020
27
100


FBH1 co-operates with MUS81 in inducing DNA double-strand breaks and cell death following replication stress.
Kasper Fugger, Wai Kit Chu, Peter Haahr, Arne Nedergaard Kousholt, Halfdan Beck, Miranda J Payne, Katsuhiro Hanada, Ian D Hickson, Claus Storgaard Sørensen. Nat Commun 2013
66
100

Characterizing proteins and their interactions in cells and tissues using the in situ proximity ligation assay.
Ola Söderberg, Karl-Johan Leuchowius, Mats Gullberg, Malin Jarvius, Irene Weibrecht, Lars-Gunnar Larsson, Ulf Landegren. Methods 2008
376
100

Activation of the ATR kinase by the RPA-binding protein ETAA1.
Peter Haahr, Saskia Hoffmann, Maxim A X Tollenaere, Teresa Ho, Luis Ignacio Toledo, Matthias Mann, Simon Bekker-Jensen, Markus Räschle, Niels Mailand. Nat Cell Biol 2016
133
100

The essential kinase ATR: ensuring faithful duplication of a challenging genome.
Joshua C Saldivar, David Cortez, Karlene A Cimprich. Nat Rev Mol Cell Biol 2017
353
100

AND-1 fork protection function prevents fork resection and is essential for proliferation.
Takuya Abe, Ryotaro Kawasumi, Michele Giannattasio, Sabrina Dusi, Yui Yoshimoto, Keiji Miyata, Koyuki Umemura, Kouji Hirota, Dana Branzei. Nat Commun 2018
21
100

Repair and biochemical effects of DNA-protein crosslinks.
Hiroshi Ide, Mahmoud I Shoulkamy, Toshiaki Nakano, Mayumi Miyamoto-Matsubara, Amir M H Salem. Mutat Res 2011
87
100

Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.
Katharina Schlacher, Nicole Christ, Nicolas Siaud, Akinori Egashira, Hong Wu, Maria Jasin. Cell 2011
769
100

MUS81-EME2 promotes replication fork restart.
Alessandra Pepe, Stephen C West. Cell Rep 2014
84
100

ATR-mediated phosphorylation of FANCI regulates dormant origin firing in response to replication stress.
Yu-Hung Chen, Mathew J K Jones, Yandong Yin, Sarah B Crist, Luca Colnaghi, Robert J Sims, Eli Rothenberg, Prasad V Jallepalli, Tony T Huang. Mol Cell 2015
108
100

Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components.
Constance Alabert, Jimi-Carlo Bukowski-Wills, Sung-Bau Lee, Georg Kustatscher, Kyosuke Nakamura, Flavia de Lima Alves, Patrice Menard, Jakob Mejlvang, Juri Rappsilber, Anja Groth. Nat Cell Biol 2014
216
100

Camptothecin-Induced Replication Stress Affects DNA Replication Profiling by E/L Repli-Seq.
Takuya Hayakawa, Rino Suzuki, Kazuhiro Kagotani, Katsuzumi Okumura, Shin-Ichiro Takebayashi. Cytogenet Genome Res 2021
2
100

Abasic and oxidized ribonucleotides embedded in DNA are processed by human APE1 and not by RNase H2.
Matilde Clarissa Malfatti, Sathya Balachander, Giulia Antoniali, Kyung Duk Koh, Christine Saint-Pierre, Didier Gasparutto, Hyongi Chon, Robert J Crouch, Francesca Storici, Gianluca Tell. Nucleic Acids Res 2017
35
100

The structure-specific endonuclease Mus81 contributes to replication restart by generating double-strand DNA breaks.
Katsuhiro Hanada, Magda Budzowska, Sally L Davies, Ellen van Drunen, Hideo Onizawa, H Berna Beverloo, Alex Maas, Jeroen Essers, Ian D Hickson, Roland Kanaar. Nat Struct Mol Biol 2007
288
100

The level of origin firing inversely affects the rate of replication fork progression.
Yuan Zhong, Tittu Nellimoottil, Jared M Peace, Simon R V Knott, Sandra K Villwock, Janis M Yee, Jeffrey M Jancuska, Sanket Rege, Marianne Tecklenburg, Robert A Sclafani,[...]. J Cell Biol 2013
61
100

Rescuing stalled or damaged replication forks.
Joseph T P Yeeles, Jérôme Poli, Kenneth J Marians, Philippe Pasero. Cold Spring Harb Perspect Biol 2013
162
100

ETAA1 acts at stalled replication forks to maintain genome integrity.
Thomas E Bass, Jessica W Luzwick, Gina Kavanaugh, Clinton Carroll, Huzefa Dungrawala, Gloria G Glick, Michael D Feldkamp, Reid Putney, Walter J Chazin, David Cortez. Nat Cell Biol 2016
134
100

Rapid destruction of human Cdc25A in response to DNA damage.
N Mailand, J Falck, C Lukas, R G Syljuâsen, M Welcker, J Bartek, J Lukas. Science 2000
615
100


Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
183
100


R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
266
100

ATAD5 restricts R-loop formation through PCNA unloading and RNA helicase maintenance at the replication fork.
Sangin Kim, Nalae Kang, Su Hyung Park, James Wells, Taejoo Hwang, Eunjin Ryu, Byung-Gyu Kim, Sunyoung Hwang, Seong-Jung Kim, Sukhyun Kang,[...]. Nucleic Acids Res 2020
21
100

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
676
100


ATR and ATRIP: partners in checkpoint signaling.
D Cortez, S Guntuku, J Qin, S J Elledge. Science 2001
710
100

Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition.
Nishita Shastri, Yu-Chen Tsai, Suzanne Hile, Deondre Jordan, Barrett Powell, Jessica Chen, Dillon Maloney, Marei Dose, Yancy Lo, Theonie Anastassiadis,[...]. Mol Cell 2018
34
100

Replication stress induces mitotic death through parallel pathways regulated by WAPL and telomere deprotection.
V Pragathi Masamsetti, Ronnie Ren Jie Low, Ka Sin Mak, Aisling O'Connor, Chris D Riffkin, Noa Lamm, Laure Crabbe, Jan Karlseder, David C S Huang, Makoto T Hayashi,[...]. Nat Commun 2019
17
100

Claspin promotes normal replication fork rates in human cells.
Eva Petermann, Thomas Helleday, Keith W Caldecott. Mol Biol Cell 2008
88
100

ATRX loss induces telomere dysfunction and necessitates induction of alternative lengthening of telomeres during human cell immortalization.
Fei Li, Zhong Deng, Ling Zhang, Caizhi Wu, Ying Jin, Inah Hwang, Olga Vladimirova, Libo Xu, Lynnie Yang, Bin Lu,[...]. EMBO J 2019
35
100

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
605
100

Chk1 regulates the S phase checkpoint by coupling the physiological turnover and ionizing radiation-induced accelerated proteolysis of Cdc25A.
Claus Storgaard Sørensen, Randi G Syljuåsen, Jacob Falck, Tine Schroeder, Lars Rönnstrand, Kum Kum Khanna, Bin-Bing Zhou, Jiri Bartek, Jiri Lukas. Cancer Cell 2003
420
100

DNA replication origin activation in space and time.
Michalis Fragkos, Olivier Ganier, Philippe Coulombe, Marcel Méchali. Nat Rev Mol Cell Biol 2015
262
100

RNF4 and PLK1 are required for replication fork collapse in ATR-deficient cells.
Ryan L Ragland, Sima Patel, Rebecca S Rivard, Kevin Smith, Ashley A Peters, Anja-Katrin Bielinsky, Eric J Brown. Genes Dev 2013
70
100

DNA damage response and tumorigenesis in Mcm2-deficient mice.
D Kunnev, M E Rusiniak, A Kudla, A Freeland, G K Cady, S C Pruitt. Oncogene 2010
68
100

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.
R Scott Hansen, Sean Thomas, Richard Sandstrom, Theresa K Canfield, Robert E Thurman, Molly Weaver, Michael O Dorschner, Stanley M Gartler, John A Stamatoyannopoulos. Proc Natl Acad Sci U S A 2010
353
100

High speed of fork progression induces DNA replication stress and genomic instability.
Apolinar Maya-Mendoza, Pavel Moudry, Joanna Maria Merchut-Maya, MyungHee Lee, Robert Strauss, Jiri Bartek. Nature 2018
221
100

Spontaneous slow replication fork progression elicits mitosis alterations in homologous recombination-deficient mammalian cells.
Therese Wilhelm, Indiana Magdalou, Aurélia Barascu, Hervé Técher, Michelle Debatisse, Bernard S Lopez. Proc Natl Acad Sci U S A 2014
46
100

The DNA replication fork in eukaryotic cells.
S Waga, B Stillman. Annu Rev Biochem 1998
635
100

Stalled fork rescue via dormant replication origins in unchallenged S phase promotes proper chromosome segregation and tumor suppression.
Tsuyoshi Kawabata, Spencer W Luebben, Satoru Yamaguchi, Ivar Ilves, Ilze Matise, Tavanna Buske, Michael R Botchan, Naoko Shima. Mol Cell 2011
143
100

Transcription-mediated organization of the replication initiation program across large genes sets common fragile sites genome-wide.
Olivier Brison, Sami El-Hilali, Dana Azar, Stéphane Koundrioukoff, Mélanie Schmidt, Viola Nähse, Yan Jaszczyszyn, Anne-Marie Lachages, Bernard Dutrillaux, Claude Thermes,[...]. Nat Commun 2019
36
100

The emerging determinants of replication fork stability.
Tanay Thakar, George-Lucian Moldovan. Nucleic Acids Res 2021
7
100

Targeting the nucleotide salvage factor DNPH1 sensitizes BRCA-deficient cells to PARP inhibitors.
Kasper Fugger, Ilirjana Bajrami, Mariana Silva Dos Santos, Sarah Jane Young, Simone Kunzelmann, Geoff Kelly, Graeme Hewitt, Harshil Patel, Robert Goldstone, Thomas Carell,[...]. Science 2021
24
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.