A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
100

The GEM mapper: fast, accurate and versatile alignment by filtration.
Santiago Marco-Sola, Michael Sammeth, Roderic Guigó, Paolo Ribeca. Nat Methods 2012
316
100

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
100

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.
Yibin Liu, Paulina Siejka-Zielińska, Gergana Velikova, Ying Bi, Fang Yuan, Marketa Tomkova, Chunsen Bai, Lei Chen, Benjamin Schuster-Böckler, Chun-Xiao Song. Nat Biotechnol 2019
128
100

4
100

DNA methylation in mammals.
En Li, Yi Zhang. Cold Spring Harb Perspect Biol 2014
449
100


Evaluation of whole-genome DNA methylation sequencing library preparation protocols.
Jacob Morrison, Julie M Koeman, Benjamin K Johnson, Kelly K Foy, Ian Beddows, Wanding Zhou, David W Chesla, Larissa L Rossell, Emily J Siegwald, Marie Adams,[...]. Epigenetics Chromatin 2021
6
100


Highly integrated single-base resolution maps of the epigenome in Arabidopsis.
Ryan Lister, Ronan C O'Malley, Julian Tonti-Filippini, Brian D Gregory, Charles C Berry, A Harvey Millar, Joseph R Ecker. Cell 2008
100


Size-tagged preferred ends in maternal plasma DNA shed light on the production mechanism and show utility in noninvasive prenatal testing.
Kun Sun, Peiyong Jiang, Ada I C Wong, Yvonne K Y Cheng, Suk Hang Cheng, Haiqiang Zhang, K C Allen Chan, Tak Y Leung, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2018
72
100

Subtype-GAN: a deep learning approach for integrative cancer subtyping of multi-omics data.
Hai Yang, Rui Chen, Dongdong Li, Zhe Wang. Bioinformatics 2021
8
100

BSMAP: whole genome bisulfite sequence MAPping program.
Yuanxin Xi, Wei Li. BMC Bioinformatics 2009
635
100

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
100

Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments.
Kun Sun, Peiyong Jiang, K C Allen Chan, John Wong, Yvonne K Y Cheng, Raymond H S Liang, Wai-kong Chan, Edmond S K Ma, Stephen L Chan, Suk Hang Cheng,[...]. Proc Natl Acad Sci U S A 2015
367
100

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen. Nature 2008
100

A comparison of gene expression and DNA methylation patterns across tissues and species.
Lauren E Blake, Julien Roux, Irene Hernando-Herraez, Nicholas E Banovich, Raquel Garcia Perez, Chiaowen Joyce Hsiao, Ittai Eres, Claudia Cuevas, Tomas Marques-Bonet, Yoav Gilad. Genome Res 2020
49
100

A novel NGS library preparation method to characterize native termini of fragmented DNA.
Kelly M Harkins, Nathan K Schaefer, Christopher J Troll, Varsha Rao, Joshua Kapp, Colin Naughton, Beth Shapiro, Richard E Green. Nucleic Acids Res 2020
5
100


DNA methylation and the preservation of cell identity.
Ozren Bogdanović, Ryan Lister. Curr Opin Genet Dev 2017
66
100

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing.
K C Allen Chan, Peiyong Jiang, Carol W M Chan, Kun Sun, John Wong, Edwin P Hui, Stephen L Chan, Wing Cheong Chan, David S C Hui, Simon S M Ng,[...]. Proc Natl Acad Sci U S A 2013
243
100

BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
Kevin Yu Yuan Huang, Yan-Jiun Huang, Pao-Yang Chen. BMC Bioinformatics 2018
21
100

Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit.
Kun Sun, Lishi Li, Li Ma, Yu Zhao, Lin Deng, Huating Wang, Hao Sun. Patterns (N Y) 2020
2
100


Bioinformatic tools for DNA methylation and histone modification: A survey.
Nasibeh Chenarani, Abbasali Emamjomeh, Abdollah Allahverdi, SeyedAli Mirmostafa, Mohammad Hossein Afsharinia, Javad Zahiri. Genomics 2021
4
100

DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.