A citation-based method for searching scientific literature

Vinay S Swamy, Temesgen D Fufa, Robert B Hufnagel, David M McGaughey. Gigascience 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Efficient integration of heterogeneous single-cell transcriptomes using Scanorama.
Brian Hie, Bryan Bryson, Bonnie Berger. Nat Biotechnol 2019
181
50

Circulating fibrocytes--biology and mechanisms in wound healing and scar formation.
Gerrit Grieb, Guy Steffens, Norbert Pallua, Jürgen Bernhagen, Richard Bucala. Int Rev Cell Mol Biol 2011
62
50

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
50

Fibrocytes: emerging effector cells in chronic inflammation.
Ronald A Reilkoff, Richard Bucala, Erica L Herzog. Nat Rev Immunol 2011
298
50

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
50

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
Greg Finak, Andrew McDavid, Masanao Yajima, Jingyuan Deng, Vivian Gersuk, Alex K Shalek, Chloe K Slichter, Hannah W Miller, M Juliana McElrath, Martin Prlic,[...]. Genome Biol 2015
845
50

Massive mining of publicly available RNA-seq data from human and mouse.
Alexander Lachmann, Denis Torre, Alexandra B Keenan, Kathleen M Jagodnik, Hoyjin J Lee, Lily Wang, Moshe C Silverstein, Avi Ma'ayan. Nat Commun 2018
211
50

Identification of markers that distinguish monocyte-derived fibrocytes from monocytes, macrophages, and fibroblasts.
Darrell Pilling, Ted Fan, Donna Huang, Bhavika Kaul, Richard H Gomer. PLoS One 2009
362
50

Gene Set Knowledge Discovery with Enrichr.
Zhuorui Xie, Allison Bailey, Maxim V Kuleshov, Daniel J B Clarke, John E Evangelista, Sherry L Jenkins, Alexander Lachmann, Megan L Wojciechowicz, Eryk Kropiwnicki, Kathleen M Jagodnik,[...]. Curr Protoc 2021
231
50

Prostaglandin E2 hydrogel improves cutaneous wound healing via M2 macrophages polarization.
Shuaiqiang Zhang, Yuanyuan Liu, Xin Zhang, Dashuai Zhu, Xin Qi, Xiaocang Cao, Yihu Fang, Yongzhe Che, Zhong-Chao Han, Zuo-Xiang He,[...]. Theranostics 2018
70
50

Fast, sensitive and accurate integration of single-cell data with Harmony.
Ilya Korsunsky, Nghia Millard, Jean Fan, Kamil Slowikowski, Fan Zhang, Kevin Wei, Yuriy Baglaenko, Michael Brenner, Po-Ru Loh, Soumya Raychaudhuri. Nat Methods 2019
754
50

alona: a web server for single-cell RNA-seq analysis.
Oscar Franzén, Johan L M Björkegren. Bioinformatics 2020
17
50

Benchmarking atlas-level data integration in single-cell genomics.
Malte D Luecken, M Büttner, K Chaichoompu, A Danese, M Interlandi, M F Mueller, D C Strobl, L Zappia, M Dugas, M Colomé-Tatché,[...]. Nat Methods 2022
31
50

GSVA: gene set variation analysis for microarray and RNA-seq data.
Sonja Hänzelmann, Robert Castelo, Justin Guinney. BMC Bioinformatics 2013
50

Nebulosa recovers single cell gene expression signals by kernel density estimation.
Jose Alquicira-Hernandez, Joseph E Powell. Bioinformatics 2021
15
50

Hedgehog stimulates hair follicle neogenesis by creating inductive dermis during murine skin wound healing.
Chae Ho Lim, Qi Sun, Karan Ratti, Soung-Hoon Lee, Ying Zheng, Makoto Takeo, Wendy Lee, Piul Rabbani, Maksim V Plikus, Jason E Cain,[...]. Nat Commun 2018
101
50

PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.
Oscar Franzén, Li-Ming Gan, Johan L M Björkegren. Database (Oxford) 2019
223
50

The Achilles' heel of senescent cells: from transcriptome to senolytic drugs.
Yi Zhu, Tamara Tchkonia, Tamar Pirtskhalava, Adam C Gower, Husheng Ding, Nino Giorgadze, Allyson K Palmer, Yuji Ikeno, Gene B Hubbard, Marc Lenburg,[...]. Aging Cell 2015
907
50

Transfer learning of clinical outcomes from preclinical molecular data, principles and perspectives.
Axel Kowald, Israel Barrantes, Steffen Möller, Daniel Palmer, Hugo Murua Escobar, Anne Schwerk, Georg Fuellen. Brief Bioinform 2022
1
100

Exploration of databases and methods supporting drug repurposing: a comprehensive survey.
Ziaurrehman Tanoli, Umair Seemab, Andreas Scherer, Krister Wennerberg, Jing Tang, Markus Vähä-Koskela. Brief Bioinform 2021
28
50

Gene expression profile in human trabecular meshwork from patients with primary open-angle glaucoma.
Yutao Liu, R Rand Allingham, Xuejun Qin, David Layfield, Andrew E Dellinger, Jason Gibson, Joshua Wheeler, Allison E Ashley-Koch, W Daniel Stamer, Michael A Hauser. Invest Ophthalmol Vis Sci 2013
42
50

Intraocular Pressure-Lowering Effects of Trabeculectomy Versus MicroShunt Insertion in Rabbit Eyes.
Tomokazu Fujimoto, Kei-Ichi Nakashima, Fumika Watanabe-Kitamura, Takahiro Watanabe, Kenichi Nakamura, Kentaro Maki, Atsushi Shimazaki, Masatomo Kato, Hidenobu Tanihara, Toshihiro Inoue. Transl Vis Sci Technol 2021
4
50

Cellular crosstalk regulates the aqueous humor outflow pathway and provides new targets for glaucoma therapies.
Benjamin R Thomson, Pan Liu, Tuncer Onay, Jing Du, Stuart W Tompson, Sol Misener, Raj R Purohit, Terri L Young, Jing Jin, Susan E Quaggin. Nat Commun 2021
3
50


Mapping the origin and fate of myeloid cells in distinct compartments of the eye by single-cell profiling.
Peter Wieghofer, Nora Hagemeyer, Roman Sankowski, Anja Schlecht, Ori Staszewski, Lukas Amann, Markus Gruber, Jana Koch, Annika Hausmann, Peipei Zhang,[...]. EMBO J 2021
26
50


DNA Methylation Analysis of Human Trabecular Meshwork Cells During Dexamethasone Stimulation.
Akira Matsuda, Yosuke Asada, Kanae Takakuwa, Jobu Sugita, Akira Murakami, Nobuyuki Ebihara. Invest Ophthalmol Vis Sci 2015
15
50

Molecular taxonomy of human ocular outflow tissues defined by single-cell transcriptomics.
Gaurang Patel, Wen Fury, Hua Yang, Maria Gomez-Caraballo, Yu Bai, Tao Yang, Christina Adler, Yi Wei, Min Ni, Heather Schmitt,[...]. Proc Natl Acad Sci U S A 2020
35
50


Ocular fibroblast types differ in their mRNA profiles--implications for fibrosis prevention after aqueous shunt implantation.
Marian Löbler, Diana Buß, Christian Kastner, Jörg Mostertz, Georg Homuth, Mathias Ernst, Rudolf Guthoff, Andreas Wree, Thomas Stahnke, Georg Fuellen,[...]. Mol Vis 2013
8
50

Suppression of the TGF-β pathway by a macrolide antibiotic decreases fibrotic responses by ocular fibroblasts in vitro.
Thomas Stahnke, Beata Gajda-Deryło, Anselm G Jünemann, Oliver Stachs, Katharina A Sterenczak, Robert Rejdak, Julia Beck, Ekkehard Schütz, Steffen Möller, Israel Barrantes,[...]. R Soc Open Sci 2020
3
50




Alteration of gene expression in mice after glaucoma filtration surgery.
Keisuke Adachi, Yosuke Asada, Toshiaki Hirakata, Miki Onoue, Satoshi Iwamoto, Toshimitsu Kasuga, Akira Matsuda. Sci Rep 2020
2
50

The Molecular Processes in the Trabecular Meshwork After Exposure to Corticosteroids and in Corticosteroid-Induced Ocular Hypertension.
Ilona Liesenborghs, Lars M T Eijssen, Martina Kutmon, Theo G M F Gorgels, Chris T Evelo, Henny J M Beckers, Carroll A B Webers, Johannes S A G Schouten. Invest Ophthalmol Vis Sci 2020
5
50

Conjunctival fibrosis following filtering glaucoma surgery.
Günther Schlunck, Tobias Meyer-ter-Vehn, Thomas Klink, Franz Grehn. Exp Eye Res 2016
64
50

Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis.
Tavé van Zyl, Wenjun Yan, Alexi McAdams, Yi-Rong Peng, Karthik Shekhar, Aviv Regev, Dejan Juric, Joshua R Sanes. Proc Natl Acad Sci U S A 2020
42
50


Gene expression profiles of human trabecular meshwork cells induced by triamcinolone and dexamethasone.
Bao Jian Fan, Dan Yi Wang, Clement Chee Yung Tham, Dennis Shun Chiu Lam, Chi Pui Pang. Invest Ophthalmol Vis Sci 2008
52
50

The FAIR Guiding Principles for scientific data management and stewardship.
Mark D Wilkinson, Michel Dumontier, I Jsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E Bourne,[...]. Sci Data 2016
50

Transcriptome-wide study of the response of human trabecular meshwork cells to the substrate stiffness increase.
Jinjun Tie, Dong Chen, Junhong Guo, Shengjie Liao, Xiaotian Luo, Yu Zhang, Ruru Guo, Chenjia Xu, Dandan Huang, Yi Zhang,[...]. J Cell Biochem 2020
7
50

Alterations in gene expression induced by cyclic mechanical stress in trabecular meshwork cells.
Coralia Luna, Guorong Li, Paloma B Liton, David L Epstein, Pedro Gonzalez. Mol Vis 2009
56
50

Modulation of wound healing during and after glaucoma surgery.
Stelios Georgoulas, Annegret Dahlmann-Noor, Stephen Brocchini, Peng Tee Khaw. Prog Brain Res 2008
53
50

Steroid-induced ocular hypertension/glaucoma: Focus on pharmacogenomics and implications for precision medicine.
M Elizabeth Fini, Stephen G Schwartz, Xiaoyi Gao, Shinwu Jeong, Nitin Patel, Tatsuo Itakura, Marianne O Price, Francis W Price, Rohit Varma, W Daniel Stamer. Prog Retin Eye Res 2017
57
50

Implementation and relevance of FAIR data principles in biopharmaceutical R&D.
John Wise, Alexandra Grebe de Barron, Andrea Splendiani, Beeta Balali-Mood, Drashtti Vasant, Eric Little, Gaspare Mellino, Ian Harrow, Ian Smith, Jan Taubert,[...]. Drug Discov Today 2019
31
50

An omics perspective on drug target discovery platforms.
Jussi Paananen, Vittorio Fortino. Brief Bioinform 2020
35
50


Primary cilia and the reciprocal activation of AKT and SMAD2/3 regulate stretch-induced autophagy in trabecular meshwork cells.
Myoung Sup Shim, April Nettesheim, Angela Dixon, Paloma B Liton. Proc Natl Acad Sci U S A 2021
9
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.