A citation-based method for searching scientific literature

Samuel W K Wong, Zongjun Liu. Proteins 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
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Engineered trimeric ACE2 binds viral spike protein and locks it in "Three-up" conformation to potently inhibit SARS-CoV-2 infection.
Liang Guo, Wenwen Bi, Xinling Wang, Wei Xu, Renhong Yan, Yuanyuan Zhang, Kai Zhao, Yaning Li, Mingfeng Zhang, Xia Cai,[...]. Cell Res 2021
44
100


Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Daniel Wrapp, Nianshuang Wang, Kizzmekia S Corbett, Jory A Goldsmith, Ching-Lin Hsieh, Olubukola Abiona, Barney S Graham, Jason S McLellan. Science 2020
100

Neutralizing Antibodies against SARS-CoV-2 and Other Human Coronaviruses.
Shibo Jiang, Christopher Hillyer, Lanying Du. Trends Immunol 2020
499
100

SAbPred: a structure-based antibody prediction server.
James Dunbar, Konrad Krawczyk, Jinwoo Leem, Claire Marks, Jaroslaw Nowak, Cristian Regep, Guy Georges, Sebastian Kelm, Bojana Popovic, Charlotte M Deane. Nucleic Acids Res 2016
62
100

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant.
Leonid Yurkovetskiy, Xue Wang, Kristen E Pascal, Christopher Tomkins-Tinch, Thomas P Nyalile, Yetao Wang, Alina Baum, William E Diehl, Ann Dauphin, Claudia Carbone,[...]. Cell 2020
537
100

Dynamic personalities of proteins.
Katherine Henzler-Wildman, Dorothee Kern. Nature 2007
100

The VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling.
Jianing Li, Robert Abel, Kai Zhu, Yixiang Cao, Suwen Zhao, Richard A Friesner. Proteins 2011
437
100

Identification of function-associated loop motifs and application to protein function prediction.
Jordi Espadaler, Enrique Querol, Francesc X Aviles, Baldo Oliva. Bioinformatics 2006
28
100

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Fernando P Polack, Stephen J Thomas, Nicholas Kitchin, Judith Absalon, Alejandra Gurtman, Stephen Lockhart, John L Perez, Gonzalo Pérez Marc, Edson D Moreira, Cristiano Zerbini,[...]. N Engl J Med 2020
100

Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence.
Mayya Sedova, Lukasz Jaroszewski, Arghavan Alisoltani, Adam Godzik. Bioinformatics 2020
21
100

New tools provide new insights in NMR studies of protein dynamics.
Anthony Mittermaier, Lewis E Kay. Science 2006
573
100

Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.
Claire Marks, Jaroslaw Nowak, Stefan Klostermann, Guy Georges, James Dunbar, Jiye Shi, Sebastian Kelm, Charlotte M Deane. Bioinformatics 2017
31
100

SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects.
Antoni G Wrobel, Donald J Benton, Pengqi Xu, Chloë Roustan, Stephen R Martin, Peter B Rosenthal, John J Skehel, Steven J Gamblin. Nat Struct Mol Biol 2020
251
100


Protein disorder prediction: implications for structural proteomics.
Rune Linding, Lars Juhl Jensen, Francesca Diella, Peer Bork, Toby J Gibson, Robert B Russell. Structure 2003
880
100

Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2.
Renhong Yan, Yuanyuan Zhang, Yaning Li, Lu Xia, Yingying Guo, Qiang Zhou. Science 2020
100

Jalview Version 2--a multiple sequence alignment editor and analysis workbench.
Andrew M Waterhouse, James B Procter, David M A Martin, Michèle Clamp, Geoffrey J Barton. Bioinformatics 2009
100

A human neutralizing antibody targets the receptor-binding site of SARS-CoV-2.
Rui Shi, Chao Shan, Xiaomin Duan, Zhihai Chen, Peipei Liu, Jinwen Song, Tao Song, Xiaoshan Bi, Chao Han, Lianao Wu,[...]. Nature 2020
773
100

Loop modeling: Sampling, filtering, and scoring.
Cinque S Soto, Marc Fasnacht, Jiang Zhu, Lucy Forrest, Barry Honig. Proteins 2008
107
100

Protein loops with multiple meta-stable conformations: A challenge for sampling and scoring methods.
Amélie Barozet, Marc Bianciotto, Marc Vaisset, Thierry Siméon, Hervé Minoux, Juan Cortés. Proteins 2021
5
100

Local dynamics of proteins and DNA evaluated from crystallographic B factors.
Bohdan Schneider, Jean Christophe Gelly, Alexandre G de Brevern, Jiří Černý. Acta Crystallogr D Biol Crystallogr 2014
35
100

A Novel Coronavirus from Patients with Pneumonia in China, 2019.
Na Zhu, Dingyu Zhang, Wenling Wang, Xingwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang, Weifeng Shi, Roujian Lu,[...]. N Engl J Med 2020
100

Homology modeling in drug discovery: Overview, current applications, and future perspectives.
Muhammed Tilahun Muhammed, Esin Aki-Yalcin. Chem Biol Drug Des 2019
89
100

Molecular dynamics analysis of a flexible loop at the binding interface of the SARS-CoV-2 spike protein receptor-binding domain.
Jonathan K Williams, Baifan Wang, Andrew Sam, Cody L Hoop, David A Case, Jean Baum. Proteins 2022
12
100

Structural impact on SARS-CoV-2 spike protein by D614G substitution.
Jun Zhang, Yongfei Cai, Tianshu Xiao, Jianming Lu, Hanqin Peng, Sarah M Sterling, Richard M Walsh, Sophia Rits-Volloch, Haisun Zhu, Alec N Woosley,[...]. Science 2021
155
100


SARS-CoV-2 spike-protein D614G mutation increases virion spike density and infectivity.
Lizhou Zhang, Cody B Jackson, Huihui Mou, Amrita Ojha, Haiyong Peng, Brian D Quinlan, Erumbi S Rangarajan, Andi Pan, Abigail Vanderheiden, Mehul S Suthar,[...]. Nat Commun 2020
440
100

Distinct conformational states of SARS-CoV-2 spike protein.
Yongfei Cai, Jun Zhang, Tianshu Xiao, Hanqin Peng, Sarah M Sterling, Richard M Walsh, Shaun Rawson, Sophia Rits-Volloch, Bing Chen. Science 2020
508
100

Covid-19 vaccines: delivering protective immunity.
Herb F Sewell, Raymond M Agius, Denise Kendrick, Marcia Stewart. BMJ 2020
38
100

Mutations Strengthened SARS-CoV-2 Infectivity.
Jiahui Chen, Rui Wang, Menglun Wang, Guo-Wei Wei. J Mol Biol 2020
227
100

The Impact of Mutations in SARS-CoV-2 Spike on Viral Infectivity and Antigenicity.
Qianqian Li, Jiajing Wu, Jianhui Nie, Li Zhang, Huan Hao, Shuo Liu, Chenyan Zhao, Qi Zhang, Huan Liu, Lingling Nie,[...]. Cell 2020
801
100

Making Sense of Mutation: What D614G Means for the COVID-19 Pandemic Remains Unclear.
Nathan D Grubaugh, William P Hanage, Angela L Rasmussen. Cell 2020
226
100

Predicting loop conformational ensembles.
Claire Marks, Jiye Shi, Charlotte M Deane. Bioinformatics 2018
11
100

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor.
Jun Lan, Jiwan Ge, Jinfang Yu, Sisi Shan, Huan Zhou, Shilong Fan, Qi Zhang, Xuanling Shi, Qisheng Wang, Linqi Zhang,[...]. Nature 2020
100


Optimized atomic statistical potentials: assessment of protein interfaces and loops.
Guang Qiang Dong, Hao Fan, Dina Schneidman-Duhovny, Ben Webb, Andrej Sali. Bioinformatics 2013
80
100


Fast de novo discovery of low-energy protein loop conformations.
Samuel W K Wong, Jun S Liu, S C Kou. Proteins 2017
6
100

PISCES: a protein sequence culling server.
Guoli Wang, Roland L Dunbrack. Bioinformatics 2003
100

Modeling protein conformational ensembles: from missing loops to equilibrium fluctuations.
Amarda Shehu, Cecilia Clementi, Lydia E Kavraki. Proteins 2006
48
100

Modeling of loops in protein structures.
A Fiser, R K Do, A Sali. Protein Sci 2000
100

Structural basis of receptor recognition by SARS-CoV-2.
Jian Shang, Gang Ye, Ke Shi, Yushun Wan, Chuming Luo, Hideki Aihara, Qibin Geng, Ashley Auerbach, Fang Li. Nature 2020
100

The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
100


DaReUS-Loop: a web server to model multiple loops in homology models.
Yasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd J de Vries. Nucleic Acids Res 2019
14
100


The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery.
Elena Papaleo, Giorgio Saladino, Matteo Lambrughi, Kresten Lindorff-Larsen, Francesco Luigi Gervasio, Ruth Nussinov. Chem Rev 2016
195
100

An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Michael Schoof, Bryan Faust, Reuben A Saunders, Smriti Sangwan, Veronica Rezelj, Nick Hoppe, Morgane Boone, Christian B Billesbølle, Cristina Puchades, Caleigh M Azumaya,[...]. Science 2020
182
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.