A citation-based method for searching scientific literature

Shun-Jia Chen, Leehyeon Kim, Hyun Kyu Song, Alexander Varshavsky. Proc Natl Acad Sci U S A 2021
Times Cited: 8







List of co-cited articles
97 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes.
Shun-Jia Chen, Xia Wu, Brandon Wadas, Jang-Hyun Oh, Alexander Varshavsky. Science 2017
112
100


N-degron and C-degron pathways of protein degradation.
Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
221
87

Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway.
Cheng Dong, Heng Zhang, Li Li, Wolfram Tempel, Peter Loppnau, Jinrong Min. Nat Chem Biol 2018
50
87

Gid10 as an alternative N-recognin of the Pro/N-degron pathway.
Artem Melnykov, Shun-Jia Chen, Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
24
75

Interconversion between Anticipatory and Active GID E3 Ubiquitin Ligase Conformations via Metabolically Driven Substrate Receptor Assembly.
Shuai Qiao, Christine R Langlois, Jakub Chrustowicz, Dawafuti Sherpa, Ozge Karayel, Fynn M Hansen, Viola Beier, Susanne von Gronau, Daniel Bollschweiler, Tillman Schäfer,[...]. Mol Cell 2020
29
75

GID E3 ligase supramolecular chelate assembly configures multipronged ubiquitin targeting of an oligomeric metabolic enzyme.
Dawafuti Sherpa, Jakub Chrustowicz, Shuai Qiao, Christine R Langlois, Laura A Hehl, Karthik Varma Gottemukkala, Fynn M Hansen, Ozge Karayel, Susanne von Gronau, J Rajan Prabu,[...]. Mol Cell 2021
15
75

Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase.
Ka-Yiu Edwin Kong, Bernd Fischer, Matthias Meurer, Ilia Kats, Zhaoyan Li, Frank Rühle, Joseph D Barry, Daniel Kirrmaier, Veronika Chevyreva, Bryan-Joseph San Luis,[...]. Mol Cell 2021
15
75

N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
442
62

Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases.
Woo Suk Choi, Byung-Cheon Jeong, Yoo Jin Joo, Myeong-Ryeol Lee, Joon Kim, Michael J Eck, Hyun Kyu Song. Nat Struct Mol Biol 2010
101
62

Recognition of nonproline N-terminal residues by the Pro/N-degron pathway.
Cheng Dong, Shun-Jia Chen, Artem Melnykov, Sara Weirich, Kelly Sun, Albert Jeltsch, Alexander Varshavsky, Jinrong Min. Proc Natl Acad Sci U S A 2020
15
62

DIA-based systems biology approach unveils E3 ubiquitin ligase-dependent responses to a metabolic shift.
Ozge Karayel, André C Michaelis, Matthias Mann, Brenda A Schulman, Christine R Langlois. Proc Natl Acad Sci U S A 2020
10
62

Exploring the topology of the Gid complex, the E3 ubiquitin ligase involved in catabolite-induced degradation of gluconeogenic enzymes.
Ruth Menssen, Jörg Schweiggert, Jens Schreiner, Denis Kusevic, Julia Reuther, Bernhard Braun, Dieter H Wolf. J Biol Chem 2012
66
50

Formyl-methionine as an N-degron of a eukaryotic N-end rule pathway.
Jeong-Mok Kim, Ok-Hee Seok, Shinyeong Ju, Ji-Eun Heo, Jeonghun Yeom, Da-Som Kim, Joo-Yeon Yoo, Alexander Varshavsky, Cheolju Lee, Cheol-Sang Hwang. Science 2018
48
50


Crystal structure of yeast Gid10 in complex with Pro/N-degron.
Jin Seok Shin, Si Hoon Park, Leehyeon Kim, Jiwon Heo, Hyun Kyu Song. Biochem Biophys Res Commun 2021
5
80

Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway.
Anna Shemorry, Cheol-Sang Hwang, Alexander Varshavsky. Mol Cell 2013
200
50

The human GID complex engages two independent modules for substrate recruitment.
Weaam I Mohamed, Sophia L Park, Julius Rabl, Alexander Leitner, Daniel Boehringer, Matthias Peter. EMBO Rep 2021
6
66

The E2 Marie Kondo and the CTLH E3 ligase clear deposited RNA binding proteins during the maternal-to-zygotic transition.
Michael Zavortink, Lauren N Rutt, Svetlana Dzitoyeva, Jesslyn C Henriksen, Chloe Barrington, Danielle Y Bilodeau, Miranda Wang, Xiao Xiao Lily Chen, Olivia S Rissland. Elife 2020
14
50

The yeast GID complex, a novel ubiquitin ligase (E3) involved in the regulation of carbohydrate metabolism.
Olivier Santt, Thorsten Pfirrmann, Bernhard Braun, Jeannette Juretschke, Philipp Kimmig, Hartmut Scheel, Kay Hofmann, Michael Thumm, Dieter H Wolf. Mol Biol Cell 2008
96
50

The N-end rule pathway.
Takafumi Tasaki, Shashikanth M Sriram, Kyong Soo Park, Yong Tae Kwon. Annu Rev Biochem 2012
254
50

Regulation of the Gid ubiquitin ligase recognition subunit Gid4.
Ruth Menssen, Kim Bui, Dieter H Wolf. FEBS Lett 2018
17
50

A GID E3 ligase assembly ubiquitinates an Rsp5 E3 adaptor and regulates plasma membrane transporters.
Christine R Langlois, Viola Beier, Ozge Karayel, Jakub Chrustowicz, Dawafuti Sherpa, Matthias Mann, Brenda A Schulman. EMBO Rep 2022
5
80


Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
Leehyeon Kim, Do Hoon Kwon, Jiwon Heo, Mi Rae Park, Hyun Kyu Song. J Biol Chem 2020
9
37

A glycine-specific N-degron pathway mediates the quality control of protein N-myristoylation.
Richard T Timms, Zhiqian Zhang, David Y Rhee, J Wade Harper, Itay Koren, Stephen J Elledge. Science 2019
66
37

Calpain-generated natural protein fragments as short-lived substrates of the N-end rule pathway.
Konstantin I Piatkov, Jang-Hyun Oh, Yuan Liu, Alexander Varshavsky. Proc Natl Acad Sci U S A 2014
61
37

The auto-generated fragment of the Usp1 deubiquitylase is a physiological substrate of the N-end rule pathway.
Konstantin I Piatkov, Luca Colnaghi, Miklos Békés, Alexander Varshavsky, Tony T Huang. Mol Cell 2012
51
37

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
37

Catabolite degradation of fructose-1,6-bisphosphatase in the yeast Saccharomyces cerevisiae: a genome-wide screen identifies eight novel GID genes and indicates the existence of two degradation pathways.
Jochen Regelmann, Thomas Schüle, Frank S Josupeit, Jaroslav Horak, Matthias Rose, Karl-Dieter Entian, Michael Thumm, Dieter H Wolf. Mol Biol Cell 2003
119
37

Absence of erythroblast macrophage protein (Emp) leads to failure of erythroblast nuclear extrusion.
Shivani Soni, Shashi Bala, Babette Gwynn, Kenneth E Sahr, Luanne L Peters, Manjit Hanspal. J Biol Chem 2006
104
37

Gid9, a second RING finger protein contributes to the ubiquitin ligase activity of the Gid complex required for catabolite degradation.
Bernhard Braun, Thorsten Pfirrmann, Ruth Menssen, Kay Hofmann, Hartmut Scheel, Dieter H Wolf. FEBS Lett 2011
33
37

RMND5 from Xenopus laevis is an E3 ubiquitin-ligase and functions in early embryonic forebrain development.
Thorsten Pfirrmann, Pablo Villavicencio-Lorini, Abinash K Subudhi, Ruth Menssen, Dieter H Wolf, Thomas Hollemann. PLoS One 2015
23
37

The molecular basis of N-end rule recognition.
Kevin H Wang, Giselle Roman-Hernandez, Robert A Grant, Robert T Sauer, Tania A Baker. Mol Cell 2008
73
37


Wdr26 regulates nuclear condensation in developing erythroblasts.
Ru Zhen, Chingyee Moo, Zhenzhen Zhao, Mengying Chen, He Feng, Xiaojun Zheng, Liang Zhang, Jiahai Shi, Caiyong Chen. Blood 2020
26
37

The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell proliferation and targets the transcription factor Hbp1 for degradation.
Fabienne Lampert, Diana Stafa, Algera Goga, Martin Varis Soste, Samuel Gilberto, Natacha Olieric, Paola Picotti, Markus Stoffel, Matthias Peter. Elife 2018
49
37

Structural basis of substrate recognition and specificity in the N-end rule pathway.
Edna Matta-Camacho, Guennadi Kozlov, Flora F Li, Kalle Gehring. Nat Struct Mol Biol 2010
75
37

A ubiquitin ligase of symbiosis receptor kinase involved in nodule organogenesis.
Songli Yuan, Hui Zhu, Honglan Gou, Weiwei Fu, Lijing Liu, Tao Chen, Danxia Ke, Heng Kang, Qi Xie, Zonglie Hong,[...]. Plant Physiol 2012
31
37

The N-end rule pathway and regulation by proteolysis.
Alexander Varshavsky. Protein Sci 2011
456
37

Structural basis for the N-degron specificity of ClpS1 from Arabidopsis thaliana.
Leehyeon Kim, Jiwon Heo, Do Hoon Kwon, Jin Seok Shin, Se Hwan Jang, Zee-Yong Park, Hyun Kyu Song. Protein Sci 2021
8
37

Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic Transition.
Wen Xi Cao, Sarah Kabelitz, Meera Gupta, Eyan Yeung, Sichun Lin, Christiane Rammelt, Christian Ihling, Filip Pekovic, Timothy C H Low, Najeeb U Siddiqui,[...]. Cell Rep 2020
17
37

SHRED Is a Regulatory Cascade that Reprograms Ubr1 Substrate Specificity for Enhanced Protein Quality Control during Stress.
Tamas Szoradi, Katharina Schaeff, Enrique M Garcia-Rivera, Daniel N Itzhak, Rolf M Schmidt, Peter W Bircham, Kevin Leiss, Juan Diaz-Miyar, Vivian K Chen, Dale Muzzey,[...]. Mol Cell 2018
24
37

The GID ubiquitin ligase complex is a regulator of AMPK activity and organismal lifespan.
Huaize Liu, Jie Ding, Karl Köhnlein, Nadine Urban, Alessandro Ori, Pablo Villavicencio-Lorini, Peter Walentek, Lars-Oliver Klotz, Thomas Hollemann, Thorsten Pfirrmann. Autophagy 2020
29
37

Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases.
Jakub Chrustowicz, Dawafuti Sherpa, Joan Teyra, Mun Siong Loke, Grzegorz M Popowicz, Jerome Basquin, Michael Sattler, J Rajan Prabu, Sachdev S Sidhu, Brenda A Schulman. J Mol Biol 2022
5
60

The N-terminal methionine of cellular proteins as a degradation signal.
Heon-Ki Kim, Ryu-Ryun Kim, Jang-Hyun Oh, Hanna Cho, Alexander Varshavsky, Cheol-Sang Hwang. Cell 2014
121
37

A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes.
Carsten Janke, Maria M Magiera, Nicole Rathfelder, Christof Taxis, Simone Reber, Hiromi Maekawa, Alexandra Moreno-Borchart, Georg Doenges, Etienne Schwob, Elmar Schiebel,[...]. Yeast 2004
37

Structural basis for dual specificity of yeast N-terminal amidase in the N-end rule pathway.
Min Kyung Kim, Sun Joo Oh, Byung-Gil Lee, Hyun Kyu Song. Proc Natl Acad Sci U S A 2016
21
25


The degradation signal in a short-lived protein.
A Bachmair, A Varshavsky. Cell 1989
358
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.