A citation-based method for searching scientific literature

Michael Cargill, Rasika Venkataraman, Stanley Lee. Genes (Basel) 2021
Times Cited: 12







List of co-cited articles
93 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Excessive R-loops trigger an inflammatory cascade leading to increased HSPC production.
Joshua T Weinreb, Noura Ghazale, Kith Pradhan, Varun Gupta, Kathryn S Potts, Brad Tricomi, Noah J Daniels, Richard A Padgett, Sofia De Oliveira, Amit Verma,[...]. Dev Cell 2021
29
41

From unwinding to clamping - the DEAD box RNA helicase family.
Patrick Linder, Eckhard Jankowsky. Nat Rev Mol Cell Biol 2011
668
41

RNA helicase DEAD box protein 5 regulates Polycomb repressive complex 2/Hox transcript antisense intergenic RNA function in hepatitis B virus infection and hepatocarcinogenesis.
Hao Zhang, Zheng Xing, Saravana Kumar Kailasam Mani, Brigitte Bancel, David Durantel, Fabien Zoulim, Elizabeth J Tran, Philippe Merle, Ourania Andrisani. Hepatology 2016
91
25

The multiple functions of RNA helicases as drivers and regulators of gene expression.
Cyril F Bourgeois, Franck Mortreux, Didier Auboeuf. Nat Rev Mol Cell Biol 2016
135
25

DEAD-box proteins: the driving forces behind RNA metabolism.
Sanda Rocak, Patrick Linder. Nat Rev Mol Cell Biol 2004
579
25

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
139
25

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
287
25

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
164
25


DDX1, DDX21, and DHX36 helicases form a complex with the adaptor molecule TRIF to sense dsRNA in dendritic cells.
Zhiqiang Zhang, Taeil Kim, Musheng Bao, Valeria Facchinetti, Sung Yun Jung, Amir Ali Ghaffari, Jun Qin, Genhong Cheng, Yong-Jun Liu. Immunity 2011
262
25

Influenza A Virus Polymerase Recruits the RNA Helicase DDX19 to Promote the Nuclear Export of Viral mRNAs.
Cédric Diot, Guillaume Fournier, Mélanie Dos Santos, Julie Magnus, Anastasia Komarova, Sylvie van der Werf, Sandie Munier, Nadia Naffakh. Sci Rep 2016
29
25

The helicase DDX41 senses intracellular DNA mediated by the adaptor STING in dendritic cells.
Zhiqiang Zhang, Bin Yuan, Musheng Bao, Ning Lu, Taeil Kim, Yong-Jun Liu. Nat Immunol 2011
599
25

The helicase DDX41 recognizes the bacterial secondary messengers cyclic di-GMP and cyclic di-AMP to activate a type I interferon immune response.
Kislay Parvatiyar, Zhiqiang Zhang, Rosane M Teles, Songying Ouyang, Yan Jiang, Shankar S Iyer, Shivam A Zaver, Mirjam Schenk, Shang Zeng, Wenwan Zhong,[...]. Nat Immunol 2012
275
25

Cancer-associated DDX3X mutations drive stress granule assembly and impair global translation.
Yasmine A Valentin-Vega, Yong-Dong Wang, Matthew Parker, Deanna M Patmore, Anderson Kanagaraj, Jennifer Moore, Michael Rusch, David Finkelstein, David W Ellison, Richard J Gilbertson,[...]. Sci Rep 2016
84
25

A double-edged function of DDX3, as an oncogene or tumor suppressor, in cancer progression (Review).
Yu He, Dan Zhang, Yanfang Yang, Xixi Wang, Xinyu Zhao, Peng Zhang, Hongxia Zhu, Ningzhi Xu, Shufang Liang. Oncol Rep 2018
36
25

DDX41 mutations in myeloid neoplasms are associated with male gender, TP53 mutations and high-risk disease.
Andrés E Quesada, Mark J Routbort, Courtney D DiNardo, Carlos E Bueso-Ramos, Rashmi Kanagal-Shamanna, Joseph D Khoury, Beenu Thakral, Zhuang Zuo, C Cameron Yin, Sanam Loghavi,[...]. Am J Hematol 2019
50
25

Inherited and Somatic Defects in DDX41 in Myeloid Neoplasms.
Chantana Polprasert, Isabell Schulze, Mikkael A Sekeres, Hideki Makishima, Bartlomiej Przychodzen, Naoko Hosono, Jarnail Singh, Richard A Padgett, Xiaorong Gu, James G Phillips,[...]. Cancer Cell 2015
229
25

Unique ethnic features of DDX41 mutations in patients with idiopathic cytopenia of undetermined significance, myelodysplastic syndrome, or acute myeloid leukemia.
Eun-Ji Choi, Young-Uk Cho, Eun-Hye Hur, Seongsoo Jang, Nayoung Kim, Han-Seung Park, Jung-Hee Lee, Kyoo-Hyung Lee, Si-Hwan Kim, Sang-Hyun Hwang,[...]. Haematologica 2022
15
25

R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability.
Thorsten Mosler, Francesca Conte, Gabriel M C Longo, Ivan Mikicic, Nastasja Kreim, Martin M Möckel, Giuseppe Petrosino, Johanna Flach, Joan Barau, Brian Luke,[...]. Nat Commun 2021
11
27

Biological implications of somatic DDX41 p.R525H mutation in acute myeloid leukemia.
Moe Kadono, Akinori Kanai, Akiko Nagamachi, Satoru Shinriki, Jin Kawata, Koji Iwato, Taiichi Kyo, Kumi Oshima, Akihiko Yokoyama, Takeshi Kawamura,[...]. Exp Hematol 2016
32
25

DDX41 is needed for pre- and postnatal hematopoietic stem cell differentiation in mice.
Jing Ma, Nadim Mahmud, Maarten C Bosland, Susan R Ross. Stem Cell Reports 2022
5
60

Prognostic impact of DDX41 germline mutations in intensively treated acute myeloid leukemia patients: an ALFA-FILO study.
Nicolas Duployez, Laëtitia Largeaud, Matthieu Duchmann, Rathana Kim, Julie Rieunier, Juliette Lambert, Audrey Bidet, Lise Larcher, Jean Lemoine, François Delhommeau,[...]. Blood 2022
8
37

Germline DDX41 mutations cause ineffective hematopoiesis and myelodysplasia.
Timothy M Chlon, Emily Stepanchick, Courtney E Hershberger, Noah J Daniels, Kathleen M Hueneman, Ashley Kuenzi Davis, Kwangmin Choi, Yi Zheng, Carmelo Gurnari, Torsten Haferlach,[...]. Cell Stem Cell 2021
16
25

Germline DDX41 mutations define a significant entity within adult MDS/AML patients.
Marie Sébert, Marie Passet, Anna Raimbault, Ramy Rahmé, Emmanuel Raffoux, Flore Sicre de Fontbrune, Marco Cerrano, Samuel Quentin, Nadia Vasquez, Mélanie Da Costa,[...]. Blood 2019
75
25

AML with germline DDX41 variants is a clinicopathologically distinct entity with an indolent clinical course and favorable outcome.
Peng Li, Thomas White, Wei Xie, Wei Cui, Deniz Peker, Gang Zeng, Huan-You Wang, Jennie Vagher, Sara Brown, Margaret Williams,[...]. Leukemia 2022
9
33

Ddx41 inhibition of DNA damage signaling permits erythroid progenitor expansion in zebrafish.
Joshua T Weinreb, Varun Gupta, Elianna Sharvit, Rachel Weil, Teresa V Bowman. Haematologica 2022
11
27

DDX3X Suppresses the Susceptibility of Hindbrain Lineages to Medulloblastoma.
Deanna M Patmore, Amir Jassim, Erica Nathan, Reuben J Gilbertson, Daniel Tahan, Nadin Hoffmann, Yiai Tong, Kyle S Smith, Thirumala-Devi Kanneganti, Hiromichi Suzuki,[...]. Dev Cell 2020
23
16

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
81
16

The genetics of myelodysplastic syndrome: from clonal haematopoiesis to secondary leukaemia.
Adam S Sperling, Christopher J Gibson, Benjamin L Ebert. Nat Rev Cancer 2017
335
16


R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
491
16

Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
70
16

Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids.
John A Smolka, Lionel A Sanz, Stella R Hartono, Frédéric Chédin. J Cell Biol 2021
31
16

R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1.
Jia-Yu Chen, Xuan Zhang, Xiang-Dong Fu, Liang Chen. Nat Protoc 2019
28
16

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
233
16

RNase H1 and H2 Are Differentially Regulated to Process RNA-DNA Hybrids.
Arianna Lockhart, Vanessa Borges Pires, Fabio Bento, Vanessa Kellner, Sarah Luke-Glaser, George Yakoub, Helle D Ulrich, Brian Luke. Cell Rep 2019
47
16

Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
211
16




DDX3 suppresses type I interferons and favors viral replication during Arenavirus infection.
María Eugenia Loureiro, Andre Luiz Zorzetto-Fernandes, Sheli Radoshitzky, Xiaoli Chi, Simone Dallari, Nuha Marooki, Psylvia Lèger, Sabrina Foscaldi, Vince Harjono, Sonia Sharma,[...]. PLoS Pathog 2018
27
16

Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function.
Venkat S R K Yedavalli, Christine Neuveut, Ya-Hui Chi, Lawrence Kleiman, Kuan-Teh Jeang. Cell 2004
412
16

DEAD box RNA helicases: crucial regulators of gene expression and oncogenesis.
Moumita Sarkar, Mrinal Kanti Ghosh. Front Biosci (Landmark Ed) 2016
27
16

(DEAD)-box RNA helicase 3 modulates NF-κB signal pathway by controlling the phosphorylation of PP2A-C subunit.
Xin Wang, Rui Wang, Miao Luo, Chen Li, Hua-Xia Wang, Chang-Chao Huan, Yu-Rong Qu, Ying Liao, Xiang Mao. Oncotarget 2017
18
16

Targeting DDX3 in Medulloblastoma Using the Small Molecule Inhibitor RK-33.
Saritha Tantravedi, Farhad Vesuna, Paul T Winnard, Allison Martin, Michael Lim, Charles G Eberhart, Cynthia Berlinicke, Eric Raabe, Paul J van Diest, Venu Raman. Transl Oncol 2019
21
16

DDX3 enhances oncogenic KRAS‑induced tumor invasion in colorectal cancer via the β‑catenin/ZEB1 axis.
De-Wei Wu, Po-Lin Lin, Ya-Wen Cheng, Chi-Chou Huang, Lee Wang, Huei Lee. Oncotarget 2016
31
16

The RNA helicase DDX3X is an essential mediator of innate antimicrobial immunity.
Daniel Szappanos, Roland Tschismarov, Thomas Perlot, Sandra Westermayer, Katrin Fischer, Ekaterini Platanitis, Fabian Kallinger, Maria Novatchkova, Caroline Lassnig, Mathias Müller,[...]. PLoS Pathog 2018
42
16


Low/negative expression of DDX3 might predict poor prognosis in non-smoker patients with oral cancer.
C-H Lee, S-H Lin, S-F Yang, S-M Yang, M-K Chen, H Lee, J-L Ko, C-J Chen, K-T Yeh. Oral Dis 2014
24
16

DDX3X Biomarker Correlates with Poor Survival in Human Gliomas.
Dueng-Yuan Hueng, Wen-Chiuan Tsai, Hsin-Ying Clair Chiou, Shao-Wei Feng, Chin Lin, Yao-Feng Li, Li-Chun Huang, Ming-Hong Lin. Int J Mol Sci 2015
24
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.