A citation-based method for searching scientific literature

Bruce E Hayward, Karen Usdin. Genes (Basel) 2021
Times Cited: 4







List of co-cited articles
10 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome.
Wilfried M Guiblet, Marzia A Cremona, Robert S Harris, Di Chen, Kristin A Eckert, Francesca Chiaromonte, Yi-Fei Huang, Kateryna D Makova. Nucleic Acids Res 2021
29
50

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.
Regina Z Cer, Duncan E Donohue, Uma S Mudunuri, Nuri A Temiz, Michael A Loss, Nathan J Starner, Goran N Halusa, Natalia Volfovsky, Ming Yi, Brian T Luke,[...]. Nucleic Acids Res 2013
83
50

Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins.
T Schwartz, J Behlke, K Lowenhaupt, U Heinemann, A Rich. Nat Struct Biol 2001
194
50

The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences.
A Herbert, M Schade, K Lowenhaupt, J Alfken, T Schwartz, L S Shlyakhtenko, Y L Lyubchenko, A Rich. Nucleic Acids Res 1998
75
50


The Structure of the Cyprinid herpesvirus 3 ORF112-Zα·Z-DNA Complex Reveals a Mechanism of Nucleic Acids Recognition Conserved with E3L, a Poxvirus Inhibitor of Interferon Response.
Krzysztof Kuś, Krzysztof Rakus, Maxime Boutier, Theokliti Tsigkri, Luisa Gabriel, Alain Vanderplasschen, Alekos Athanasiadis. J Biol Chem 2015
14
50

The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA.
Sung Chul Ha, Doyoun Kim, Hye-Yeon Hwang, Alexander Rich, Yang-Gyun Kim, Kyeong Kyu Kim. Proc Natl Acad Sci U S A 2008
65
50

Cruciform structures are a common DNA feature important for regulating biological processes.
Václav Brázda, Rob C Laister, Eva B Jagelská, Cheryl Arrowsmith. BMC Mol Biol 2011
149
50

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
308
50

Deep learning approach for predicting functional Z-DNA regions using omics data.
Nazar Beknazarov, Seungmin Jin, Maria Poptsova. Sci Rep 2020
9
50

Z-DNA and Z-RNA in human disease.
Alan Herbert. Commun Biol 2019
53
25

Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases.
Sung Chul Ha, Ky Lowenhaupt, Alexander Rich, Yang-Gyun Kim, Kyeong Kyu Kim. Nature 2005
162
25

The ubiquitin ligase Cullin-1 associates with chromatin and regulates transcription of specific c-MYC target genes.
Melanie A Sweeney, Polina Iakova, Laure Maneix, Fu-Yuan Shih, Hannah E Cho, Ergun Sahin, Andre Catic. Sci Rep 2020
9
25

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
25

The reactome pathway knowledgebase.
Bijay Jassal, Lisa Matthews, Guilherme Viteri, Chuqiao Gong, Pascual Lorente, Antonio Fabregat, Konstantinos Sidiropoulos, Justin Cook, Marc Gillespie, Robin Haw,[...]. Nucleic Acids Res 2020
25

Replication protein A prevents accumulation of single-stranded telomeric DNA in cells that use alternative lengthening of telomeres.
Amra Grudic, Asne Jul-Larsen, Stuart J Haring, Marc S Wold, Per Eystein Lønning, Rolf Bjerkvig, Stig Ove Bøe. Nucleic Acids Res 2007
45
25

The solution structure of the N-terminal domain of E3L shows a tyrosine conformation that may explain its reduced affinity to Z-DNA in vitro.
Jan D Kahmann, Diana A Wecking, Vera Putter, Ky Lowenhaupt, Yang-Gyun Kim, Peter Schmieder, Hartmut Oschkinat, Alexander Rich, Markus Schade. Proc Natl Acad Sci U S A 2004
43
25

Comparative review on left-handed Z-DNA.
Reetabrita Roy, Pallab Chakraborty, Arindam Chatterjee, Joy Sarkar. Front Biosci (Landmark Ed) 2021
2
50

Influenza Virus Z-RNAs Induce ZBP1-Mediated Necroptosis.
Ting Zhang, Chaoran Yin, David F Boyd, Giovanni Quarato, Justin P Ingram, Maria Shubina, Katherine B Ragan, Takumi Ishizuka, Jeremy Chase Crawford, Bart Tummers,[...]. Cell 2020
151
25

Dual conformational recognition by Z-DNA binding protein is important for the B-Z transition process.
Chaehee Park, Xu Zheng, Chan Yang Park, Jeesoo Kim, Seul Ki Lee, Hyuk Won, Jinhyuk Choi, Yang-Gyun Kim, Hee-Jung Choi. Nucleic Acids Res 2020
4
25

Mutations in RNA Polymerase III genes and defective DNA sensing in adults with varicella-zoster virus CNS infection.
Madalina E Carter-Timofte, Anders F Hansen, Mette Christiansen, Søren R Paludan, Trine H Mogensen. Genes Immun 2019
38
25

The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ alpha(ADAR1).
Sung Chul Ha, Jongkeun Choi, Hye-Yeon Hwang, Alexander Rich, Yang-Gyun Kim, Kyeong Kyu Kim. Nucleic Acids Res 2009
43
25

Physical and enzymatic studies on poly d(I-C)-poly d(I-C), an unusual double-helical DNA.
Y Mitsui, R Langridge, B E Shortle, C R Cantor, R C Grant, M Kodama, R D Wells. Nature 1970
118
25

[Identification of Distinct Amino Acid Composition of Human Cruciform Binding Proteins].
М Bartas, P Bažantová, V Brázda, J С Liao, J Červeň, P Pečinka. Mol Biol (Mosk) 2019
3
33

Stimulation of DNA strand exchange by the human TBPIP/Hop2-Mnd1 complex.
Rima Enomoto, Takashi Kinebuchi, Makoto Sato, Hideshi Yagi, Hitoshi Kurumizaka, Shigeyuki Yokoyama. J Biol Chem 2006
42
25

Z-DNA binding proteins as targets for structure-based virtual screening.
Doyoun Kim, Young-Ho Lee, Hye-Yeon Hwang, Kyeong Kyu Kim, Hyun-Ju Park. Curr Drug Targets 2010
19
25

Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications.
Ananda Kishore Mukherjee, Shalu Sharma, Shantanu Chowdhury. Trends Genet 2019
45
25

The Role of the Z-DNA Binding Domain in Innate Immunity and Stress Granules.
De Chen Chiang, Yan Li, Siew Kit Ng. Front Immunol 2021
3
33


AI revolutions in biology: The joys and perils of AlphaFold.
Anastassis Perrakis, Titia K Sixma. EMBO Rep 2021
24
25

CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain.
H Poulsen, J Nilsson, C K Damgaard, J Egebjerg, J Kjems. Mol Cell Biol 2001
112
25


The Other Face of an Editor: ADAR1 Functions in Editing-Independent Ways.
Konstantin Licht, Michael F Jantsch. Bioessays 2017
10
25

Bullied no more: when and how DNA shoves proteins around.
Jonathan M Fogg, Graham L Randall, B Montgomery Pettitt, De Witt L Sumners, Sarah A Harris, Lynn Zechiedrich. Q Rev Biophys 2012
49
25

Varicella-zoster virus CNS vasculitis and RNA polymerase III gene mutation in identical twins.
Madalina E Carter-Timofte, Anders F Hansen, Maibritt Mardahl, Sébastien Fribourg, Franck Rapaport, Shen-Ying Zhang, Jean-Laurent Casanova, Søren R Paludan, Mette Christiansen, Carsten S Larsen,[...]. Neurol Neuroimmunol Neuroinflamm 2018
34
25


Z-DNA crystallography .
P S Ho, B H Mooers. Biopolymers 1997
28
25

DNA and RNA quadruplex-binding proteins.
Václav Brázda, Lucia Hároníková, Jack C C Liao, Miroslav Fojta. Int J Mol Sci 2014
166
25

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs.
Shunichi Kosugi, Masako Hasebe, Masaru Tomita, Hiroshi Yanagawa. Proc Natl Acad Sci U S A 2009
778
25

RPA mediates recombination repair during replication stress and is displaced from DNA by checkpoint signalling in human cells.
Kate M Sleeth, Claus Storgaard Sørensen, Natalia Issaeva, Jaroslaw Dziegielewski, Jiri Bartek, Thomas Helleday. J Mol Biol 2007
51
25

Inborn errors in RNA polymerase III underlie severe varicella zoster virus infections.
Benson Ogunjimi, Shen-Ying Zhang, Katrine B Sørensen, Kristian A Skipper, Madalina Carter-Timofte, Gaspard Kerner, Stefanie Luecke, Thaneas Prabakaran, Yujia Cai, Josephina Meester,[...]. J Clin Invest 2017
89
25

Evolution of Diverse Strategies for Promoter Regulation.
Václav Brázda, Martin Bartas, Richard P Bowater. Trends Genet 2021
11
25

Conservation of the three-dimensional structure in non-homologous or unrelated proteins.
Konstantinos Sousounis, Carl E Haney, Jin Cao, Bharath Sunchu, Panagiotis A Tsonis. Hum Genomics 2012
16
25

A left-handed RNA double helix bound by the Z alpha domain of the RNA-editing enzyme ADAR1.
Diana Placido, Bernard A Brown, Ky Lowenhaupt, Alexander Rich, Alekos Athanasiadis. Structure 2007
94
25

Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ).
Doyoun Kim, Jeonghwan Hur, Kwangsoo Park, Sangsu Bae, Donghyuk Shin, Sung Chul Ha, Hye-Yeon Hwang, Sungchul Hohng, Joon-Hwa Lee, Sangho Lee,[...]. Nucleic Acids Res 2014
29
25

Human genomic Z-DNA segments probed by the Z alpha domain of ADAR1.
Heng Li, Jie Xiao, Jinming Li, Le Lu, Shu Feng, Peter Dröge. Nucleic Acids Res 2009
43
25

Oxidative Modification of Guanine in a Potential Z-DNA-Forming Sequence of a Gene Promoter Impacts Gene Expression.
Aaron M Fleming, Judy Zhu, Yun Ding, Selma Esders, Cynthia J Burrows. Chem Res Toxicol 2019
11
25

Molecular structure of a left-handed double helical DNA fragment at atomic resolution.
A H Wang, G J Quigley, F J Kolpak, J L Crawford, J H van Boom, G van der Marel, A Rich. Nature 1979
25

Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA.
T Schwartz, M A Rould, K Lowenhaupt, A Herbert, A Rich. Science 1999
259
25

Recognition of non-CpG repeats in Alu and ribosomal RNAs by the Z-RNA binding domain of ADAR1 induces A-Z junctions.
Parker J Nichols, Shaun Bevers, Morkos Henen, Jeffrey S Kieft, Quentin Vicens, Beat Vögeli. Nat Commun 2021
14
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.