A citation-based method for searching scientific literature

Roghayeh Jafarpour, Salar Pashangzadeh, Razieh Dowran. Pathol Res Pract 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Predicting Antigen Presentation-What Could We Learn From a Million Peptides?
David Gfeller, Michal Bassani-Sternberg. Front Immunol 2018
73
100

Th1 versus Th2 T cell polarization by whole-cell and acellular childhood pertussis vaccines persists upon re-immunization in adolescence and adulthood.
Tara Bancroft, Myles B C Dillon, Ricardo da Silva Antunes, Sinu Paul, Bjoern Peters, Shane Crotty, Cecilia S Lindestam Arlehamn, Alessandro Sette. Cell Immunol 2016
55
100

Analysis of A47, an immunoprevalent protein of vaccinia virus, leads to a reevaluation of the total antiviral CD8+ T cell response.
Tracy J Yuen, Inge E A Flesch, Natasha A Hollett, Bianca M Dobson, Tiffany A Russell, Aude M Fahrer, David C Tscharke. J Virol 2010
26
100

Estimates of global seasonal influenza-associated respiratory mortality: a modelling study.
A Danielle Iuliano, Katherine M Roguski, Howard H Chang, David J Muscatello, Rakhee Palekar, Stefano Tempia, Cheryl Cohen, Jon Michael Gran, Dena Schanzer, Benjamin J Cowling,[...]. Lancet 2018
100

Immunomic analysis of the repertoire of T-cell specificities for influenza A virus in humans.
Erika Assarsson, Huynh-Hoa Bui, John Sidney, Qing Zhang, Jean Glenn, Carla Oseroff, Innocent N Mbawuike, Jeff Alexander, Mark J Newman, Howard Grey,[...]. J Virol 2008
153
100

Study of HLA-A, -B, -C, -DRB1 and -DQB1 polymorphisms in COVID-19 patients.
Juan Francisco Gutiérrez-Bautista, Antonio Rodriguez-Nicolas, Antonio Rosales-Castillo, Miguel Ángel López-Ruz, Antonia María Martín-Casares, Alonso Fernández-Rubiales, Per Anderson, Federico Garrido, Francisco Ruiz-Cabello, Miguel Ángel López-Nevot. J Microbiol Immunol Infect 2022
5
100

Avian influenza virus A H7N9 infects multiple mononuclear cell types in peripheral blood and induces dysregulated cytokine responses and apoptosis in infected monocytes.
Andrew C Y Lee, Kelvin K W To, Houshun Zhu, Hin Chu, Can Li, Winger W N Mak, Anna J X Zhang, Kwok-Yung Yuen. J Gen Virol 2017
18
100

HLA antigens, alleles and haplotypes among the Yup'ik Alaska natives: report of the ASHI Minority Workshops, Part II.
Mary S Leffell, M Daniele Fallin, Henry A Erlich, Marcelo Fernandez-Vĩna, William H Hildebrand, Steven J Mack, Andrea A Zachary. Hum Immunol 2002
40
100

In silico T cell epitope identification for SARS-CoV-2: Progress and perspectives.
Muhammad Saqib Sohail, Syed Faraz Ahmed, Ahmed Abdul Quadeer, Matthew R McKay. Adv Drug Deliv Rev 2021
29
100

The pockets guide to HLA class I molecules.
Andrea T Nguyen, Christopher Szeto, Stephanie Gras. Biochem Soc Trans 2021
4
100

Antigen-specific B-cell receptor sensitizes B cells to infection by influenza virus.
Stephanie K Dougan, Joseph Ashour, Roos A Karssemeijer, Maximilian W Popp, Ana M Avalos, Marta Barisa, Arwen F Altenburg, Jessica R Ingram, Juan Jose Cragnolini, Chunguang Guo,[...]. Nature 2013
50
100

A naturally selected dimorphism within the HLA-B44 supertype alters class I structure, peptide repertoire, and T cell recognition.
Whitney A Macdonald, Anthony W Purcell, Nicole A Mifsud, Lauren K Ely, David S Williams, Linus Chang, Jeffrey J Gorman, Craig S Clements, Lars Kjer-Nielsen, David M Koelle,[...]. J Exp Med 2003
163
100

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Fernando P Polack, Stephen J Thomas, Nicholas Kitchin, Judith Absalon, Alejandra Gurtman, Stephen Lockhart, John L Perez, Gonzalo Pérez Marc, Edson D Moreira, Cristiano Zerbini,[...]. N Engl J Med 2020
100

Immunopeptidomic analysis of influenza A virus infected human tissues identifies internal proteins as a rich source of HLA ligands.
Ben Nicholas, Alistair Bailey, Karl J Staples, Tom Wilkinson, Tim Elliott, Paul Skipp. PLoS Pathog 2022
1
100

The influenza virus resource at the National Center for Biotechnology Information.
Yiming Bao, Pavel Bolotov, Dmitry Dernovoy, Boris Kiryutin, Leonid Zaslavsky, Tatiana Tatusova, Jim Ostell, David Lipman. J Virol 2008
689
100

MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape.
Phillip Pymm, Patricia T Illing, Sri H Ramarathinam, Geraldine M O'Connor, Victoria A Hughes, Corinne Hitchen, David A Price, Bosco K Ho, Daniel W McVicar, Andrew G Brooks,[...]. Nat Struct Mol Biol 2017
54
100

HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.
Daiki Miki, Hidenori Ochi, Atsushi Takahashi, C Nelson Hayes, Yuji Urabe, Hiromi Abe, Tomokazu Kawaoka, Masataka Tsuge, Nobuhiko Hiraga, Michio Imamura,[...]. PLoS One 2013
27
100

Identification of broad binding class I HLA supertype epitopes to provide universal coverage of influenza A virus.
Jeff Alexander, Pamuk Bilsel, Marie-France del Guercio, Aleksandra Marinkovic-Petrovic, Scott Southwood, Stephani Stewart, Glenn Ishioka, Maya F Kotturi, Jason Botten, John Sidney,[...]. Hum Immunol 2010
38
100

Immunogenetics of seasonal influenza vaccine response.
Gregory A Poland, Inna G Ovsyannikova, Robert M Jacobson. Vaccine 2008
74
100

Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk.
Xinli Hu, Aaron J Deutsch, Tobias L Lenz, Suna Onengut-Gumuscu, Buhm Han, Wei-Min Chen, Joanna M M Howson, John A Todd, Paul I W de Bakker, Stephen S Rich,[...]. Nat Genet 2015
148
100

Identification of Novel Candidate Epitopes on SARS-CoV-2 Proteins for South America: A Review of HLA Frequencies by Country.
David Requena, Aldhair Médico, Ruy D Chacón, Manuel Ramírez, Obert Marín-Sánchez. Front Immunol 2020
15
100

Immune cellular networks underlying recovery from influenza virus infection in acute hospitalized patients.
Thi H O Nguyen, Marios Koutsakos, Carolien E van de Sandt, Jeremy Chase Crawford, Liyen Loh, Sneha Sant, Ludivine Grzelak, Emma K Allen, Tim Brahm, E Bridie Clemens,[...]. Nat Commun 2021
14
100

The simultaneous ex vivo detection of low-frequency antigen-specific CD4+ and CD8+ T-cell responses using overlapping peptide pools.
Satwinder Kaur Singh, Maaike Meyering, Tamara H Ramwadhdoebe, Linda F M Stynenbosch, Anke Redeker, Peter J K Kuppen, Cornelis J M Melief, Marij J P Welters, Sjoerd H van der Burg. Cancer Immunol Immunother 2012
15
100

Antigenic drift: Understanding COVID-19.
Jonathan W Yewdell. Immunity 2021
10
100

A large fraction of HLA class I ligands are proteasome-generated spliced peptides.
Juliane Liepe, Fabio Marino, John Sidney, Anita Jeko, Daniel E Bunting, Alessandro Sette, Peter M Kloetzel, Michael P H Stumpf, Albert J R Heck, Michele Mishto. Science 2016
229
100

Cross-allele cytotoxic T lymphocyte responses against 2009 pandemic H1N1 influenza A virus among HLA-A24 and HLA-A3 supertype-positive individuals.
Jun Liu, Shihong Zhang, Shuguang Tan, Yong Yi, Bin Wu, Bin Cao, Fengcai Zhu, Chen Wang, Hua Wang, Jianxun Qi,[...]. J Virol 2012
33
100

The presence of monocytes enhances the susceptibility of B cells to highly pathogenic avian influenza (HPAI) H5N1 virus possibly through the increased expression of α2,3 SA receptor.
Patharapan Lersritwimanmaen, Prasit Na-Ek, Maytawan Thanunchai, Jutarat Thewsoongnoen, Noppadol Sa-Ard-Iam, Suwimon Wiboon-ut, Rangsini Mahanonda, Arunee Thitithanyanont. Biochem Biophys Res Commun 2015
6
100

Quantifying epitope presentation using mass spectrometry.
Nathan P Croft, Anthony W Purcell, David C Tscharke. Mol Immunol 2015
27
100

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction.
Jennifer G Abelin, Derin B Keskin, Siranush Sarkizova, Christina R Hartigan, Wandi Zhang, John Sidney, Jonathan Stevens, William Lane, Guang Lan Zhang, Thomas M Eisenhaure,[...]. Immunity 2017
310
100

IPD-IMGT/HLA Database.
James Robinson, Dominic J Barker, Xenia Georgiou, Michael A Cooper, Paul Flicek, Steven G E Marsh. Nucleic Acids Res 2020
864
100

Methods for prediction of peptide binding to MHC molecules: a comparative study.
Kun Yu, Nikolai Petrovsky, Christian Schönbach, Judice Y L Koh, Vladimir Brusic. Mol Med 2002
83
100

SARS-CoV-2 genome-wide T cell epitope mapping reveals immunodominance and substantial CD8+ T cell activation in COVID-19 patients.
Sunil Kumar Saini, Ditte Stampe Hersby, Tripti Tamhane, Helle Rus Povlsen, Susana Patricia Amaya Hernandez, Morten Nielsen, Anne Ortved Gang, Sine Reker Hadrup. Sci Immunol 2021
62
100

In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies.
Kirti Pandey, Nicole A Mifsud, Terry C C Lim Kam Sian, Rochelle Ayala, Nicola Ternette, Sri H Ramarathinam, Anthony W Purcell. Mol Immunol 2020
10
100

HLA class I molecules consistently present internal influenza epitopes.
Angela Wahl, Fredda Schafer, Wilfried Bardet, Rico Buchli, Gillian M Air, William H Hildebrand. Proc Natl Acad Sci U S A 2009
49
100

Humoral and circulating follicular helper T cell responses in recovered patients with COVID-19.
Jennifer A Juno, Hyon-Xhi Tan, Wen Shi Lee, Arnold Reynaldi, Hannah G Kelly, Kathleen Wragg, Robyn Esterbauer, Helen E Kent, C Jane Batten, Francesca L Mordant,[...]. Nat Med 2020
218
100

NetCTLpan: pan-specific MHC class I pathway epitope predictions.
Thomas Stranzl, Mette Voldby Larsen, Claus Lundegaard, Morten Nielsen. Immunogenetics 2010
181
100

CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope display high naive precursor frequency and TCR promiscuity.
Thi H O Nguyen, Louise C Rowntree, Jan Petersen, Brendon Y Chua, Luca Hensen, Lukasz Kedzierski, Carolien E van de Sandt, Priyanka Chaurasia, Hyon-Xhi Tan, Jennifer R Habel,[...]. Immunity 2021
36
100

Possible role of HLA class-I genotype in SARS-CoV-2 infection and progression: A pilot study in a cohort of Covid-19 Spanish patients.
Ignacio Iturrieta-Zuazo, Claudia Geraldine Rita, Ana García-Soidán, Ana de Malet Pintos-Fonseca, Nieves Alonso-Alarcón, Roberto Pariente-Rodríguez, Amalia Tejeda-Velarde, Sergio Serrano-Villar, José Luis Castañer-Alabau, Israel Nieto-Gañán. Clin Immunol 2020
38
100

Identification of cross-reactive CD8+ T cell receptors with high functional avidity to a SARS-CoV-2 immunodominant epitope and its natural mutant variants.
Chao Hu, Meiying Shen, Xiaojian Han, Qian Chen, Luo Li, Siyin Chen, Jing Zhang, Fengxia Gao, Wang Wang, Yingming Wang,[...]. Genes Dis 2022
8
100


IFNγ Modulates the Immunopeptidome of Triple Negative Breast Cancer Cells by Enhancing and Diversifying Antigen Processing and Presentation.
Gabriel Goncalves, Kerry A Mullan, Divya Duscharla, Rochelle Ayala, Nathan P Croft, Pouya Faridi, Anthony W Purcell. Front Immunol 2021
10
100

Toward a definition of self: proteomic evaluation of the class I peptide repertoire.
Heather D Hickman, Angela D Luis, Rico Buchli, Steven R Few, Muthuraman Sathiamurthy, Rodney S VanGundy, Christopher F Giberson, William H Hildebrand. J Immunol 2004
89
100

Pro-inflammatory Cytokines Alter the Immunopeptidome Landscape by Modulation of HLA-B Expression.
Aaron Javitt, Eilon Barnea, Matthias P Kramer, Hila Wolf-Levy, Yishai Levin, Arie Admon, Yifat Merbl. Front Immunol 2019
19
100

Th1/Th17 polarization persists following whole-cell pertussis vaccination despite repeated acellular boosters.
Ricardo da Silva Antunes, Mariana Babor, Chelsea Carpenter, Natalie Khalil, Mario Cortese, Alexander J Mentzer, Grégory Seumois, Christopher D Petro, Lisa A Purcell, Pandurangan Vijayanand,[...]. J Clin Invest 2018
65
100

Magnitude and Dynamics of the T-Cell Response to SARS-CoV-2 Infection at Both Individual and Population Levels.
Thomas M Snyder, Rachel M Gittelman, Mark Klinger, Damon H May, Edward J Osborne, Ruth Taniguchi, H Jabran Zahid, Ian M Kaplan, Jennifer N Dines, Matthew T Noakes,[...]. medRxiv 2020
80
100


Recovery from severe H7N9 disease is associated with diverse response mechanisms dominated by CD8⁺ T cells.
Zhongfang Wang, Yanmin Wan, Chenli Qiu, Sergio Quiñones-Parra, Zhaoqin Zhu, Liyen Loh, Di Tian, Yanqin Ren, Yunwen Hu, Xiaoyan Zhang,[...]. Nat Commun 2015
169
100

MHC Variants Associated With Symptomatic Versus Asymptomatic SARS-CoV-2 Infection in Highly Exposed Individuals.
Erick C Castelli, Mateus V de Castro, Michel S Naslavsky, Marilia O Scliar, Nayane S B Silva, Heloisa S Andrade, Andreia S Souza, Raphaela N Pereira, Camila F B Castro, Celso T Mendes-Junior,[...]. Front Immunol 2021
8
100

Nucleoprotein of influenza A virus is a major target of immunodominant CD8+ T-cell responses.
Emma Grant, Chao Wu, Kok-Fei Chan, Sidonia Eckle, Mandvi Bharadwaj, Quan Ming Zou, Katherine Kedzierska, Weisan Chen. Immunol Cell Biol 2013
68
100

Most viral peptides displayed by class I MHC on infected cells are immunogenic.
Nathan P Croft, Stewart A Smith, Jana Pickering, John Sidney, Bjoern Peters, Pouya Faridi, Matthew J Witney, Prince Sebastian, Inge E A Flesch, Sally L Heading,[...]. Proc Natl Acad Sci U S A 2019
59
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.