A citation-based method for searching scientific literature

Ilia Kats, Christian Reinbold, Marc Kschonsak, Anton Khmelinskii, Laura Armbruster, Thomas Ruppert, Michael Knop. Life Sci Alliance 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNF126-Mediated Reubiquitination Is Required for Proteasomal Degradation of p97-Extracted Membrane Proteins.
Xianyan Hu, Linhan Wang, Yuancai Wang, Jia Ji, Jiqiang Li, Zhiyuan Wang, Congcong Li, Yaoyang Zhang, Zai-Rong Zhang. Mol Cell 2020
17
100

Mechanism of ubiquitylation by dimeric RING ligase RNF4.
Anna Plechanovová, Ellis G Jaffray, Stephen A McMahon, Kenneth A Johnson, Iva Navrátilová, James H Naismith, Ronald T Hay. Nat Struct Mol Biol 2011
125
100

RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO.
Carsten Hoege, Boris Pfander, George-Lucian Moldovan, George Pyrowolakis, Stefan Jentsch. Nature 2002
100

Sequential E2s drive polyubiquitin chain assembly on APC targets.
Monica C Rodrigo-Brenni, David O Morgan. Cell 2007
203
100


Cell-fate determination by ubiquitin-dependent regulation of translation.
Achim Werner, Shintaro Iwasaki, Colleen A McGourty, Sofia Medina-Ruiz, Nia Teerikorpi, Indro Fedrigo, Nicholas T Ingolia, Michael Rape. Nature 2015
109
100

Mechanistic basis for ubiquitin modulation of a protein energy landscape.
Emma C Carroll, Naomi R Latorraca, Johanna M Lindner, Brendan C Maguire, Jeffrey G Pelton, Susan Marqusee. Proc Natl Acad Sci U S A 2021
2
100

Middle-down mass spectrometry enables characterization of branched ubiquitin chains.
Ellen M Valkevich, Nicholas A Sanchez, Ying Ge, Eric R Strieter. Biochemistry 2014
57
100

A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein.
V Chau, J W Tobias, A Bachmair, D Marriott, D J Ecker, D K Gonda, A Varshavsky. Science 1989
100


Ubiquitin Chain Enrichment Middle-Down Mass Spectrometry Enables Characterization of Branched Ubiquitin Chains in Cellulo.
Sean O Crowe, Ambar S J B Rana, Kirandeep K Deol, Ying Ge, Eric R Strieter. Anal Chem 2017
32
100

A modular toolbox to generate complex polymeric ubiquitin architectures using orthogonal sortase enzymes.
Maximilian Fottner, Maria Weyh, Stefan Gaussmann, Dominic Schwarz, Michael Sattler, Kathrin Lang. Nat Commun 2021
10
100

Layers of DUB regulation.
Danny D Sahtoe, Titia K Sixma. Trends Biochem Sci 2015
93
100

RING E3 mechanism for ubiquitin ligation to a disordered substrate visualized for human anaphase-promoting complex.
Nicholas G Brown, Ryan VanderLinden, Edmond R Watson, Renping Qiao, Christy R R Grace, Masaya Yamaguchi, Florian Weissmann, Jeremiah J Frye, Prakash Dube, Shein Ei Cho,[...]. Proc Natl Acad Sci U S A 2015
61
100

OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis.
Tycho E T Mevissen, Manuela K Hospenthal, Paul P Geurink, Paul R Elliott, Masato Akutsu, Nadia Arnaudo, Reggy Ekkebus, Yogesh Kulathu, Tobias Wauer, Farid El Oualid,[...]. Cell 2013
355
100

The N-terminal cysteine is a dual sensor of oxygen and oxidative stress.
Ah Jung Heo, Su Bin Kim, Chang Hoon Ji, Dohyun Han, Su Jin Lee, Su Hyun Lee, Min Ju Lee, Ji Su Lee, Aaron Ciechanover, Bo Yeon Kim,[...]. Proc Natl Acad Sci U S A 2021
5
100

A protein quality control pathway regulated by linear ubiquitination.
Eva M van Well, Verian Bader, Maria Patra, Ana Sánchez-Vicente, Jens Meschede, Nikolas Furthmann, Cathrin Schnack, Alina Blusch, Joseph Longworth, Elisabeth Petrasch-Parwez,[...]. EMBO J 2019
40
100

A ubiquitin ligase-associated chaperone holdase maintains polypeptides in soluble states for proteasome degradation.
Qiuyan Wang, Yanfen Liu, Nia Soetandyo, Kheewoong Baek, Ramanujan Hegde, Yihong Ye. Mol Cell 2011
158
100

Lys63/Met1-hybrid ubiquitin chains are commonly formed during the activation of innate immune signalling.
Christoph H Emmerich, Siddharth Bakshi, Ian R Kelsall, Juanma Ortiz-Guerrero, Natalia Shpiro, Philip Cohen. Biochem Biophys Res Commun 2016
59
100

A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly.
M Koegl, T Hoppe, S Schlenker, H D Ulrich, T U Mayer, S Jentsch. Cell 1999
777
100

Regulation of ubiquitin chain initiation to control the timing of substrate degradation.
Adam Williamson, Sudeep Banerjee, Xining Zhu, Isabelle Philipp, Anthony T Iavarone, Michael Rape. Mol Cell 2011
71
100

Certain pairs of ubiquitin-conjugating enzymes (E2s) and ubiquitin-protein ligases (E3s) synthesize nondegradable forked ubiquitin chains containing all possible isopeptide linkages.
Hyoung Tae Kim, Kwang Pyo Kim, Fernando Lledias, Alexei F Kisselev, K Matthew Scaglione, Dorota Skowyra, Steven P Gygi, Alfred L Goldberg. J Biol Chem 2007
330
100

Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination.
Sagar Bhogaraju, Sissy Kalayil, Yaobin Liu, Florian Bonn, Thomas Colby, Ivan Matic, Ivan Dikic. Cell 2016
165
100

A ubiquitin mutant with specific defects in DNA repair and multiubiquitination.
J Spence, S Sadis, A L Haas, D Finley. Mol Cell Biol 1995
428
100

Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain.
J Spence, R R Gali, G Dittmar, F Sherman, M Karin, D Finley. Cell 2000
297
100

Ubiquitin chain elongation requires E3-dependent tracking of the emerging conjugate.
Aileen Kelly, Katherine E Wickliffe, Ling Song, Indro Fedrigo, Michael Rape. Mol Cell 2014
60
100

Mechanism of ubiquitin chain synthesis employed by a HECT domain ubiquitin ligase.
Michael E French, Julian L Klosowiak, Aaron Aslanian, Steven I Reed, John R Yates, Tony Hunter. J Biol Chem 2017
38
100

Branched ubiquitin chain binding and deubiquitination by UCH37 facilitate proteasome clearance of stress-induced inclusions.
Aixin Song, Zachary Hazlett, Dulith Abeykoon, Jeremy Dortch, Andrew Dillon, Justin Curtiss, Sarah Bollinger Martinez, Christopher P Hill, Clinton Yu, Lan Huang,[...]. Elife 2021
7
100


A novel locus for episodic ataxia:UBR4 the likely candidate.
Judith Conroy, Paul McGettigan, Raymond Murphy, David Webb, Sinéad M Murphy, Blathnaid McCoy, Christine Albertyn, Dara McCreary, Cara McDonagh, Orla Walsh,[...]. Eur J Hum Genet 2014
46
100

Crosstalk between Lys63- and Lys11-polyubiquitin signaling at DNA damage sites is driven by Cezanne.
Xiao Wu, Shichang Liu, Cari Sagum, Jianji Chen, Rajesh Singh, Apurva Chaturvedi, John R Horton, Tanuja R Kashyap, David Fushman, Xiaodong Cheng,[...]. Genes Dev 2019
15
100

Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions.
Achim Werner, Regina Baur, Nia Teerikorpi, Deniz U Kaya, Michael Rape. Elife 2018
19
100

Multisystem Proteinopathy Mutations in VCP/p97 Increase NPLOC4·UFD1L Binding and Substrate Processing.
Emily E Blythe, Stephanie N Gates, Raymond J Deshaies, Andreas Martin. Structure 2019
27
100


UBE2S drives elongation of K11-linked ubiquitin chains by the anaphase-promoting complex.
Tao Wu, Yifat Merbl, Ying Huo, Jennifer L Gallop, Amit Tzur, Marc W Kirschner. Proc Natl Acad Sci U S A 2010
178
100

Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Edward L Huttlin, Raphael J Bruckner, Jose Navarrete-Perea, Joe R Cannon, Kurt Baltier, Fana Gebreab, Melanie P Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam,[...]. Cell 2021
131
100

Gene expression and cell identity controlled by anaphase-promoting complex.
Eugene Oh, Kevin G Mark, Annamaria Mocciaro, Edmond R Watson, J Rajan Prabu, Denny D Cha, Martin Kampmann, Nathan Gamarra, Coral Y Zhou, Michael Rape. Nature 2020
35
100

USP30 and parkin homeostatically regulate atypical ubiquitin chains on mitochondria.
Christian N Cunningham, Joshua M Baughman, Lilian Phu, Joy S Tea, Christine Yu, Mary Coons, Donald S Kirkpatrick, Baris Bingol, Jacob E Corn. Nat Cell Biol 2015
186
100

HUWE1 employs a giant substrate-binding ring to feed and regulate its HECT E3 domain.
Daniel B Grabarczyk, Olga A Petrova, Luiza Deszcz, Robert Kurzbauer, Paul Murphy, Juraj Ahel, Antonia Vogel, Rebeca Gogova, Victoria Faas, Darja Kordic,[...]. Nat Chem Biol 2021
6
100

K63 ubiquitylation triggers proteasomal degradation by seeding branched ubiquitin chains.
Fumiaki Ohtake, Hikaru Tsuchiya, Yasushi Saeki, Keiji Tanaka. Proc Natl Acad Sci U S A 2018
127
100

Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains.
Christoph H Emmerich, Alban Ordureau, Sam Strickson, J Simon C Arthur, Patrick G A Pedrioli, David Komander, Philip Cohen. Proc Natl Acad Sci U S A 2013
300
100

Autosomal dominant VCP hypomorph mutation impairs disaggregation of PHF-tau.
Nabil F Darwich, Jessica M Phan, Boram Kim, EunRan Suh, John D Papatriantafyllou, Lakshmi Changolkar, Aivi T Nguyen, Caroline M O'Rourke, Zhuohao He, Sílvia Porta,[...]. Science 2020
34
100

Quantitative Middle-Down MS Analysis of Parkin-Mediated Ubiquitin Chain Assembly.
Kirandeep K Deol, Stephen J Eyles, Eric R Strieter. J Am Soc Mass Spectrom 2020
8
100

Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome.
Yuan Shi, Xiang Chen, Suzanne Elsasser, Bradley B Stocks, Geng Tian, Byung-Hoon Lee, Yanhong Shi, Naixia Zhang, Stefanie A H de Poot, Fabian Tuebing,[...]. Science 2016
171
100

The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.
Katherine E Wickliffe, Sonja Lorenz, David E Wemmer, John Kuriyan, Michael Rape. Cell 2011
218
100

TRIP12 promotes small-molecule-induced degradation through K29/K48-branched ubiquitin chains.
Ai Kaiho-Soma, Yoshino Akizuki, Katsuhide Igarashi, Akinori Endo, Takuji Shoda, Yasuko Kawase, Yosuke Demizu, Mikihiko Naito, Yasushi Saeki, Keiji Tanaka,[...]. Mol Cell 2021
21
100

UBE2S elongates ubiquitin chains on APC/C substrates to promote mitotic exit.
Mathew J Garnett, Jörg Mansfeld, Colin Godwin, Takahiro Matsusaka, Jiahua Wu, Paul Russell, Jonathon Pines, Ashok R Venkitaraman. Nat Cell Biol 2009
196
100

Noncovalent Ubiquitin Interactions Regulate the Catalytic Activity of Ubiquitin Writers.
Joshua D Wright, Peter D Mace, Catherine L Day. Trends Biochem Sci 2016
22
100

Genetic analysis reveals functions of atypical polyubiquitin chains.
Fernando Meza Gutierrez, Deniz Simsek, Arda Mizrak, Adam Deutschbauer, Hannes Braberg, Jeffrey Johnson, Jiewei Xu, Michael Shales, Michelle Nguyen, Raquel Tamse-Kuehn,[...]. Elife 2018
9
100

The deubiquitinase TRABID stabilizes the K29/K48-specific E3 ubiquitin ligase HECTD1.
Lee D Harris, Janic Le Pen, Nico Scholz, Juliusz Mieszczanek, Natalie Vaughan, Simon Davis, Georgina Berridge, Benedikt M Kessler, Mariann Bienz, Julien D F Licchesi. J Biol Chem 2021
8
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.