A citation-based method for searching scientific literature

Ineke Luise Tan, Donatella Barisani, Roberto Panceri, Rutger Modderman, Marijn Visschedijk, Rinse K Weersma, Cisca Wijmenga, Iris Jonkers, Rodrigo Coutinho de Almeida, Sebo Withoff. Int J Mol Sci 2021
Times Cited: 2







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Systematic Prioritization of Candidate Genes in Disease Loci Identifies TRAFD1 as a Master Regulator of IFNγ Signaling in Celiac Disease.
Adriaan van der Graaf, Maria M Zorro, Annique Claringbould, Urmo Võsa, Raúl Aguirre-Gamboa, Chan Li, Joram Mooiweer, Isis Ricaño-Ponce, Zuzanna Borek, Frits Koning,[...]. Front Genet 2021
8
100

Coregulation and modulation of NFκB-related genes in celiac disease: uncovered aspects of gut mucosal inflammation.
Nora Fernandez-Jimenez, Ainara Castellanos-Rubio, Leticia Plaza-Izurieta, Iñaki Irastorza, Xabier Elcoroaristizabal, Amaia Jauregi-Miguel, Tamara Lopez-Euba, Carlos Tutau, Marian M de Pancorbo, Juan Carlos Vitoria,[...]. Hum Mol Genet 2014
59
100

Coeliac disease.
Benjamin Lebwohl, David S Sanders, Peter H R Green. Lancet 2018
380
100

Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs.
Isis Ricaño-Ponce, Daria V Zhernakova, Patrick Deelen, Oscar Luo, Xingwang Li, Aaron Isaacs, Juha Karjalainen, Jennifer Di Tommaso, Zuzanna Agnieszka Borek, Maria M Zorro,[...]. J Autoimmun 2016
42
100

MicroRNAs: new players in IBD.
R Kalla, N T Ventham, N A Kennedy, J F Quintana, E R Nimmo, A H Buck, J Satsangi. Gut 2015
171
50

Management of celiac disease in daily clinical practice.
Luca Elli, Francesca Ferretti, Stefania Orlando, Maurizio Vecchi, Erika Monguzzi, Leda Roncoroni, Detlef Schuppan. Eur J Intern Med 2019
24
50

Tissue alarmins and adaptive cytokine induce dynamic and distinct transcriptional responses in tissue-resident intraepithelial cytotoxic T lymphocytes.
Maria Magdalena Zorro, Raul Aguirre-Gamboa, Toufic Mayassi, Cezary Ciszewski, Donatella Barisani, Shixian Hu, Rinse K Weersma, Sebo Withoff, Yang Li, Cisca Wijmenga,[...]. J Autoimmun 2020
6
50

Circulating microRNAs as biomarkers of adult Crohn's disease.
Michael D Jensen, Rikke F Andersen, Henry Christensen, Torben Nathan, Jens Kjeldsen, Jonna S Madsen. Eur J Gastroenterol Hepatol 2015
25
50

Celiac disease diagnosis from videocapsule endoscopy images with residual learning and deep feature extraction.
Xinle Wang, Haiyang Qian, Edward J Ciaccio, Suzanne K Lewis, Govind Bhagat, Peter H Green, Shenghao Xu, Liang Huang, Rongke Gao, Yu Liu. Comput Methods Programs Biomed 2020
11
50

DNA methylation: superior or subordinate in the epigenetic hierarchy?
Bilian Jin, Yajun Li, Keith D Robertson. Genes Cancer 2011
326
50

A miRNA-Based Blood and Mucosal Approach for Detecting and Monitoring Celiac Disease.
Karla A Bascuñán, Francisco Pérez-Bravo, Gabriella Gaudioso, Valentina Vaira, Leda Roncoroni, Luca Elli, Erika Monguzzi, Magdalena Araya. Dig Dis Sci 2020
16
50

Celiac disease biomarkers identified by transcriptome analysis of small intestinal biopsies.
Hanna Bragde, Ulf Jansson, Mats Fredrikson, Ewa Grodzinsky, Jan Söderman. Cell Mol Life Sci 2018
21
50

MethylCal: Bayesian calibration of methylation levels.
Eguzkine Ochoa, Verena Zuber, Nora Fernandez-Jimenez, Jose Ramon Bilbao, Graeme R Clark, Eamonn R Maher, Leonardo Bottolo. Nucleic Acids Res 2019
5
50

Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
50

Food-derived opioid peptides inhibit cysteine uptake with redox and epigenetic consequences.
Malav S Trivedi, Jayni S Shah, Sara Al-Mughairy, Nathaniel W Hodgson, Benjamin Simms, Geert A Trooskens, Wim Van Criekinge, Richard C Deth. J Nutr Biochem 2014
53
50

Genome search in celiac disease.
L Greco, G Corazza, M C Babron, F Clot, M C Fulchignoni-Lataud, S Percopo, P Zavattari, F Bouguerra, C Dib, R Tosi,[...]. Am J Hum Genet 1998
168
50

Small-bowel carcinomas associated with celiac disease: transcriptomic profiling shows predominance of microsatellite instability-immune and mesenchymal subtypes.
Francesca Rizzo, Alessandro Vanoli, Nora Sahnane, Roberta Cerutti, Davide Trapani, Antonio Rinaldi, Assunta Sellitto, Carolina Ciacci, Umberto Volta, Vincenzo Villanacci,[...]. Virchows Arch 2020
10
50

Quantitative analysis of patients with celiac disease by video capsule endoscopy: A deep learning method.
Teng Zhou, Guoqiang Han, Bing Nan Li, Zhizhe Lin, Edward J Ciaccio, Peter H Green, Jing Qin. Comput Biol Med 2017
63
50

Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli.
Katsutoshi Imamura, Naoto Imamachi, Gen Akizuki, Michiko Kumakura, Atsushi Kawaguchi, Kyosuke Nagata, Akihisa Kato, Yasushi Kawaguchi, Hiroki Sato, Misako Yoneda,[...]. Mol Cell 2014
432
50


Expression analysis in intestinal mucosa reveals complex relations among genes under the association peaks in celiac disease.
Leticia Plaza-Izurieta, Nora Fernandez-Jimenez, Iñaki Irastorza, Amaia Jauregi-Miguel, Irati Romero-Garmendia, Juan Carlos Vitoria, Jose Ramon Bilbao. Eur J Hum Genet 2015
28
50

microRNA profiles in coeliac patients distinguish different clinical phenotypes and are modulated by gliadin peptides in primary duodenal fibroblasts.
Valentina Vaira, Leda Roncoroni, Donatella Barisani, Gabriella Gaudioso, Silvano Bosari, Gaetano Bulfamante, Luisa Doneda, Dario Conte, Carolina Tomba, Maria Teresa Bardella,[...]. Clin Sci (Lond) 2014
46
50

miRNAs affect the expression of innate and adaptive immunity proteins in celiac disease.
Serena Magni, Gaia Buoli Comani, Luca Elli, Samanta Vanessi, Elisa Ballarini, Gabriella Nicolini, Michela Rusconi, Mirco Castoldi, Raffaella Meneveri, Martina U Muckenthaler,[...]. Am J Gastroenterol 2014
37
50

Distinct IFNG methylation in a subset of ulcerative colitis patients based on reactivity to microbial antigens.
Rivkah Gonsky, Richard L Deem, Carol J Landers, Carrie A Derkowski, Dror Berel, Dermot P B McGovern, Stephan R Targan. Inflamm Bowel Dis 2011
23
50

Classification of intestinal T-cell receptor repertoires using machine learning methods can identify patients with coeliac disease regardless of dietary gluten status.
Andrew D Foers, M Saad Shoukat, Oliver E Welsh, Killian Donovan, Russell Petry, Shelley C Evans, Michael Eb FitzPatrick, Nadine Collins, Paul Klenerman, Anna Fowler,[...]. J Pathol 2021
3
50

LBH Gene Transcription Regulation by the Interplay of an Enhancer Risk Allele and DNA Methylation in Rheumatoid Arthritis.
Deepa Hammaker, John W Whitaker, Keisuke Maeshima, David L Boyle, Anna-Karin H Ekwall, Wei Wang, Gary S Firestein. Arthritis Rheumatol 2016
31
50

Assessment of Machine Learning Detection of Environmental Enteropathy and Celiac Disease in Children.
Sana Syed, Mohammad Al-Boni, Marium N Khan, Kamran Sadiq, Najeeha T Iqbal, Christopher A Moskaluk, Paul Kelly, Beatrice Amadi, S Asad Ali, Sean R Moore,[...]. JAMA Netw Open 2019
18
50

Gluten-induced RNA methylation changes regulate intestinal inflammation via allele-specific XPO1 translation in epithelial cells.
Ane Olazagoitia-Garmendia, Linda Zhang, Paula Mera, Julie K Godbout, Maialen Sebastian-DelaCruz, Iraia Garcia-Santisteban, Luis Manuel Mendoza, Alain Huerta, Iñaki Irastorza, Govind Bhagat,[...]. Gut 2022
9
50

Precision medicine and machine learning towards the prediction of the outcome of potential celiac disease.
Francesco Piccialli, Francesco Calabrò, Danilo Crisci, Salvatore Cuomo, Edoardo Prezioso, Roberta Mandile, Riccardo Troncone, Luigi Greco, Renata Auricchio. Sci Rep 2021
6
50

A genetic perspective on coeliac disease.
Gosia Trynka, Cisca Wijmenga, David A van Heel. Trends Mol Med 2010
78
50


Machine Learning Analysis of Naïve B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and Controls.
Or Shemesh, Pazit Polak, Knut E A Lundin, Ludvig M Sollid, Gur Yaari. Front Immunol 2021
8
50

IL-15: a central regulator of celiac disease immunopathology.
Valérie Abadie, Bana Jabri. Immunol Rev 2014
129
50

Detection and analysis of RNA methylation.
Nigel P Mongan, Richard D Emes, Nathan Archer. F1000Res 2019
22
50

The interplay between diet, gut microbes, and host epigenetics in health and disease.
Tori Shock, Luis Badang, Bradley Ferguson, Kristina Martinez-Guryn. J Nutr Biochem 2021
9
50

Comparing DNA methylation profiles in saliva and intestinal mucosa.
Nerissa L Hearn, Aaron S Coleman, Vincent Ho, Christine L Chiu, Joanne M Lind. BMC Genomics 2019
8
50

DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome.
Kate Joanne Howell, Judith Kraiczy, Komal M Nayak, Marco Gasparetto, Alexander Ross, Claire Lee, Tim N Mak, Bon-Kyoung Koo, Nitin Kumar, Trevor Lawley,[...]. Gastroenterology 2018
126
50

Genetic contribution of the HLA region to the familial clustering of coeliac disease.
F Petronzelli, M Bonamico, P Ferrante, R Grillo, B Mora, P Mariani, I Apollonio, G Gemme, M C Mazzilli. Ann Hum Genet 1997
111
50

MicroRNA-449a overexpression, reduced NOTCH1 signals and scarce goblet cells characterize the small intestine of celiac patients.
Marina Capuano, Laura Iaffaldano, Nadia Tinto, Donatella Montanaro, Valentina Capobianco, Valentina Izzo, Francesca Tucci, Giancarlo Troncone, Luigi Greco, Lucia Sacchetti. PLoS One 2011
66
50

Emerging role of long noncoding RNAs in autoimmune diseases.
Guo-Cui Wu, Hai-Feng Pan, Rui-Xue Leng, De-Guang Wang, Xiang-Pei Li, Xiao-Mei Li, Dong-Qing Ye. Autoimmun Rev 2015
172
50

Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
626
50

Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.
Javier Gutierrez-Achury, Maria Magdalena Zorro, Isis Ricaño-Ponce, Daria V Zhernakova, Dorothée Diogo, Soumya Raychaudhuri, Lude Franke, Gosia Trynka, Cisca Wijmenga, Alexandra Zhernakova. Hum Mol Genet 2016
18
50

The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region.
Nora Fernandez-Jimenez, Koldo Garcia-Etxebarria, Leticia Plaza-Izurieta, Irati Romero-Garmendia, Amaia Jauregi-Miguel, Maria Legarda, Szilvia Ecsedi, Ainara Castellanos-Rubio, Vincent Cahais, Cyrille Cuenin,[...]. Sci Rep 2019
16
50

Cytoplasmic Form of Carlr lncRNA Facilitates Inflammatory Gene Expression upon NF-κB Activation.
Ainara Castellanos-Rubio, Radomir Kratchmarov, Maialen Sebastian, Koldo Garcia-Etxebarria, Liher Garcia, Iñaki Irastorza, Sankar Ghosh. J Immunol 2017
21
50

Comparison of DNA methylation profiles from saliva in Coeliac disease and non-coeliac disease individuals.
Nerissa L Hearn, Christine L Chiu, Joanne M Lind. BMC Med Genomics 2020
3
50

Deciphering the Transcriptomic Heterogeneity of Duodenal Coeliac Disease Biopsies.
Johannes Wolf, Edith Willscher, Henry Loeffler-Wirth, Maria Schmidt, Gunter Flemming, Marlen Zurek, Holm H Uhlig, Norman Händel, Hans Binder. Int J Mol Sci 2021
4
50

Small bowel adenocarcinomas in celiac disease follow the CIM-MSI pathway.
Frank Bergmann, Sandhya Singh, Sara Michel, Christoph Kahlert, Peter Schirmacher, Burkhard Helmke, Magnus Von Knebel Doeberitz, Matthias Kloor, Hendrik Bläker. Oncol Rep 2010
21
50

On the classification of long non-coding RNAs.
Lina Ma, Vladimir B Bajic, Zhang Zhang. RNA Biol 2013
676
50

An operational definition of epigenetics.
Shelley L Berger, Tony Kouzarides, Ramin Shiekhattar, Ali Shilatifard. Genes Dev 2009
961
50

MAGI2 Gene Region and Celiac Disease.
Amaia Jauregi-Miguel, Izortze Santin, Koldo Garcia-Etxebarria, Ane Olazagoitia-Garmendia, Irati Romero-Garmendia, Maialen Sebastian-delaCruz, Iñaki Irastorza, Ainara Castellanos-Rubio, Jose Ramón Bilbao. Front Nutr 2019
6
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.