A citation-based method for searching scientific literature

Ruoyao Lin, Xiaoming Zhong, Yongli Zhou, Huichao Geng, Qingxi Hu, Zhihao Huang, Jun Hu, Xiang-Dong Fu, Liang Chen, Jia-Yu Chen. Nucleic Acids Res 2022
Times Cited: 4







List of co-cited articles
22 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
139
75

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
491
75

QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.
Piroon Jenjaroenpun, Thidathip Wongsurawat, Surya Pavan Yenamandra, Vladimir A Kuznetsov. Nucleic Acids Res 2015
30
75

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination.
Paul A Ginno, Yoong Wearn Lim, Paul L Lott, Ian Korf, Frédéric Chédin. Genome Res 2013
222
75

R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops.
Piroon Jenjaroenpun, Thidathip Wongsurawat, Sawannee Sutheeworapong, Vladimir A Kuznetsov. Nucleic Acids Res 2017
24
75

GADD45A binds R-loops and recruits TET1 to CpG island promoters.
Khelifa Arab, Emil Karaulanov, Michael Musheev, Philipp Trnka, Andrea Schäfer, Ingrid Grummt, Christof Niehrs. Nat Genet 2019
99
50

Mapping Native R-Loops Genome-wide Using a Targeted Nuclease Approach.
Qingqing Yan, Emily J Shields, Roberto Bonasio, Kavitha Sarma. Cell Rep 2019
38
50

EWS-FLI1 increases transcription to cause R-loops and block BRCA1 repair in Ewing sarcoma.
Aparna Gorthi, July Carolina Romero, Eva Loranc, Lin Cao, Liesl A Lawrence, Elicia Goodale, Amanda Balboni Iniguez, Xavier Bernard, V Pragathi Masamsetti, Sydney Roston,[...]. Nature 2018
125
50


Machine learning model for sequence-driven DNA G-quadruplex formation.
Aleksandr B Sahakyan, Vicki S Chambers, Giovanni Marsico, Tobias Santner, Marco Di Antonio, Shankar Balasubramanian. Sci Rep 2017
56
50

Best practices for the visualization, mapping, and manipulation of R-loops.
Frédéric Chédin, Stella R Hartono, Lionel A Sanz, Vincent Vanoosthuyse. EMBO J 2021
28
50

Defining R-loop classes and their contributions to genome instability.
Daisy Castillo-Guzman, Frédéric Chédin. DNA Repair (Amst) 2021
12
50

Ultra-deep Coverage Single-molecule R-loop Footprinting Reveals Principles of R-loop Formation.
Maika Malig, Stella R Hartono, Jenna M Giafaglione, Lionel A Sanz, Frederic Chedin. J Mol Biol 2020
27
50

The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast.
Stella R Hartono, Amélie Malapert, Pénélope Legros, Pascal Bernard, Frédéric Chédin, Vincent Vanoosthuyse. J Mol Biol 2018
74
50

Reconstruction of Ewing Sarcoma Developmental Context from Mass-Scale Transcriptomics Reveals Characteristics of EWSR1-FLI1 Permissibility.
Henry E Miller, Aparna Gorthi, Nicklas Bassani, Liesl A Lawrence, Brian S Iskra, Alexander J R Bishop. Cancers (Basel) 2020
10
50

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
164
50

Cohesin SA1 and SA2 are RNA binding proteins that localize to RNA containing regions on DNA.
Hai Pan, Miao Jin, Ashwin Ghadiyaram, Parminder Kaur, Henry E Miller, Hai Minh Ta, Ming Liu, Yanlin Fan, Chelsea Mahn, Aparna Gorthi,[...]. Nucleic Acids Res 2020
17
50

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
279
50


valr: Reproducible genome interval analysis in R.
Kent A Riemondy, Ryan M Sheridan, Austin Gillen, Yinni Yu, Christopher G Bennett, Jay R Hesselberth. F1000Res 2017
18
50

S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
155
50

Genomic profiling of native R loops with a DNA-RNA hybrid recognition sensor.
Kang Wang, Honghong Wang, Conghui Li, Zhinang Yin, Ruijing Xiao, Qiuzi Li, Ying Xiang, Wen Wang, Jian Huang, Liang Chen,[...]. Sci Adv 2021
21
50

Unveiling the druggable RNA targets and small molecule therapeutics.
Joanna Sztuba-Solinska, Gabriela Chavez-Calvillo, Sabrina Elizabeth Cline. Bioorg Med Chem 2019
23
25

LncRNA-AC006129.1 reactivates a SOCS3-mediated anti-inflammatory response through DNA methylation-mediated CIC downregulation in schizophrenia.
Chaoying Ni, Wei Jiang, Zhongju Wang, Zhuo Wang, Jian Zhang, Xianzhen Zheng, Zelin Liu, Haiyan Ou, Tingyun Jiang, Wenquan Liang,[...]. Mol Psychiatry 2021
17
25

Long noncoding RNA GIHCG promotes hepatocellular carcinoma progression through epigenetically regulating miR-200b/a/429.
Cheng-Jun Sui, Yan-Ming Zhou, Wei-Feng Shen, Bing-Hua Dai, Jiong-Jiong Lu, Min-Feng Zhang, Jia-Mei Yang. J Mol Med (Berl) 2016
67
25

LincRNAFEZF1-AS1 represses p21 expression to promote gastric cancer proliferation through LSD1-Mediated H3K4me2 demethylation.
Yan-Wen Liu, Rui Xia, Kai Lu, Min Xie, Fen Yang, Ming Sun, Wei De, Cailian Wang, Guozhong Ji. Mol Cancer 2017
120
25

S-adenosylmethionine in liver health, injury, and cancer.
Shelly C Lu, José M Mato. Physiol Rev 2012
299
25


Sensitivity of transcription factors to DNA methylation.
Éléa Héberlé, Anaïs Flore Bardet. Essays Biochem 2019
81
25

Principles for targeting RNA with drug-like small molecules.
Katherine Deigan Warner, Christine E Hajdin, Kevin M Weeks. Nat Rev Drug Discov 2018
261
25


Long Non-coding RNA IRAIN Inhibits VEGFA Expression via Enhancing Its DNA Methylation Leading to Tumor Suppression in Renal Carcinoma.
Yang Li, Qingyang Luo, Zun Li, Yun Wang, Chaoyang Zhu, Tieqiang Li, Xiaodong Li. Front Oncol 2020
5
25

Targeted design and identification of AC1NOD4Q to block activity of HOTAIR by abrogating the scaffold interaction with EZH2.
Yu Ren, Yun-Fei Wang, Jing Zhang, Qi-Xue Wang, Lei Han, Mei Mei, Chun-Sheng Kang. Clin Epigenetics 2019
34
25



yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs.
Stefan Frank, Gaurav Ahuja, Deniz Bartsch, Nicole Russ, Wenjie Yao, Joseph Chao-Chung Kuo, Jens-Peter Derks, Vijay Suresh Akhade, Yulia Kargapolova, Theodore Georgomanolis,[...]. Cell Stem Cell 2019
28
25

Long non-coding RNA CDKN2B-AS1 reduces inflammatory response and promotes cholesterol efflux in atherosclerosis by inhibiting ADAM10 expression.
Haocheng Li, Song Han, Qingfeng Sun, Ye Yao, Shiyong Li, Chao Yuan, Bo Zhang, Bao Jing, Jia Wu, Ye Song,[...]. Aging (Albany NY) 2019
38
25

Antisense lncRNA Transcription Mediates DNA Demethylation to Drive Stochastic Protocadherin α Promoter Choice.
Daniele Canzio, Chiamaka L Nwakeze, Adan Horta, Sandy M Rajkumar, Eliot L Coffey, Erin E Duffy, Rachel Duffié, Kevin Monahan, Sean O'Keeffe, Matthew D Simon,[...]. Cell 2019
75
25

lncRNA HOTAIRM1 promotes osteogenesis of hDFSCs by epigenetically regulating HOXA2 via DNMT1 in vitro.
Zhengyuan Chen, Jinxuan Zheng, Hong Hong, Dongru Chen, Lidi Deng, Xueqin Zhang, Junqi Ling, Liping Wu. J Cell Physiol 2020
15
25


Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation.
Atsuya Nishiyama, Christopher B Mulholland, Sebastian Bultmann, Satomi Kori, Akinori Endo, Yasushi Saeki, Weihua Qin, Carina Trummer, Yoshie Chiba, Haruka Yokoyama,[...]. Nat Commun 2020
47
25

Male-Specific Long Noncoding RNA TTTY15 Inhibits Non-Small Cell Lung Cancer Proliferation and Metastasis via TBX4.
I-Lu Lai, Ya-Sian Chang, Wen-Ling Chan, Ya-Ting Lee, Ju-Chen Yen, Chin-An Yang, Shih-Ya Hung, Jan-Gowth Chang. Int J Mol Sci 2019
20
25

Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes.
H Bierhoff, K Schmitz, F Maass, J Ye, I Grummt. Cold Spring Harb Symp Quant Biol 2010
73
25

Long noncoding RNA HOXB13-AS1 regulates HOXB13 gene methylation by interacting with EZH2 in glioma.
Yu Xiong, Wei Kuang, Shigang Lu, Hua Guo, Miaojing Wu, Minhua Ye, Lei Wu. Cancer Med 2018
23
25

Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2.
Ming-De Huang, Wen-Ming Chen, Fu-Zhen Qi, Ming Sun, Tong-Peng Xu, Pei Ma, Yong-Qian Shu. Mol Cancer 2015
169
25

Pan-cancer characterization of long non-coding RNA and DNA methylation mediated transcriptional dysregulation.
Zhen Yang, Feng Xu, Haizhou Wang, Andrew E Teschendorff, Feng Xie, Yungang He. EBioMedicine 2021
8
25

Methionine deficiency promoted mitophagy via lncRNA PVT1-mediated promoter demethylation of BNIP3 in gastric cancer.
Lin Xin, Hao Lu, Chuan Liu, Fei Zeng, Yi-Wu Yuan, You Wu, Jin-Liang Wang, Deng-Zhong Wu, Li-Qiang Zhou. Int J Biochem Cell Biol 2021
2
50

A noncoding RNA modulator potentiates phenylalanine metabolism in mice.
Yajuan Li, Zhi Tan, Yaohua Zhang, Zhao Zhang, Qingsong Hu, Ke Liang, Yao Jun, Youqiong Ye, Yi-Chuan Li, Chunlai Li,[...]. Science 2021
15
25


The Polycomb group protein EZH2 directly controls DNA methylation.
Emmanuelle Viré, Carmen Brenner, Rachel Deplus, Loïc Blanchon, Mario Fraga, Céline Didelot, Lluis Morey, Aleyde Van Eynde, David Bernard, Jean-Marie Vanderwinden,[...]. Nature 2006
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.