A citation-based method for searching scientific literature

Amelia Escolano, Harry B Gristick, Rajeev Gautam, Andrew T DeLaitsch, Morgan E Abernathy, Zhi Yang, Haoqing Wang, Magnus A G Hoffmann, Yoshiaki Nishimura, Zijun Wang, Nicholas Koranda, Leesa M Kakutani, Han Gao, Priyanthi N P Gnanapragasam, Henna Raina, Ana Gazumyan, Melissa Cipolla, Thiago Y Oliveira, Victor Ramos, Darrell J Irvine, Murillo Silva, Anthony P West, Jennifer R Keeffe, Christopher O Barnes, Michael S Seaman, Michel C Nussenzweig, Malcolm A Martin, Pamela J Bjorkman. Sci Transl Med 2021
Times Cited: 4







List of co-cited articles
20 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies.
Rogier W Sanders, Ronald Derking, Albert Cupo, Jean-Philippe Julien, Anila Yasmeen, Natalia de Val, Helen J Kim, Claudia Blattner, Alba Torrents de la Peña, Jacob Korzun,[...]. PLoS Pathog 2013
616
75

HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies.
Jon M Steichen, Daniel W Kulp, Talar Tokatlian, Amelia Escolano, Pia Dosenovic, Robyn L Stanfield, Laura E McCoy, Gabriel Ozorowski, Xiaozhen Hu, Oleksandr Kalyuzhniy,[...]. Immunity 2016
216
75

Immunization expands B cells specific to HIV-1 V3 glycan in mice and macaques.
Amelia Escolano, Harry B Gristick, Morgan E Abernathy, Julia Merkenschlager, Rajeev Gautam, Thiago Y Oliveira, Joy Pai, Anthony P West, Christopher O Barnes, Alexander A Cohen,[...]. Nature 2019
86
75

Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding.
Johannes F Scheid, Hugo Mouquet, Beatrix Ueberheide, Ron Diskin, Florian Klein, Thiago Y K Oliveira, John Pietzsch, David Fenyo, Alexander Abadir, Klara Velinzon,[...]. Science 2011
846
50

Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target.
Laura M Walker, Sanjay K Phogat, Po-Ying Chan-Hui, Denise Wagner, Pham Phung, Julie L Goss, Terri Wrin, Melissa D Simek, Steven Fling, Jennifer L Mitcham,[...]. Science 2009
50

Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site.
Harry B Gristick, Lotta von Boehmer, Anthony P West, Michael Schamber, Anna Gazumyan, Jovana Golijanin, Michael S Seaman, Gerd Fätkenheuer, Florian Klein, Michel C Nussenzweig,[...]. Nat Struct Mol Biol 2016
133
50

Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies.
Allan deCamp, Peter Hraber, Robert T Bailer, Michael S Seaman, Christina Ochsenbauer, John Kappes, Raphael Gottardo, Paul Edlefsen, Steve Self, Haili Tang,[...]. J Virol 2014
191
50

Cryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop.
Haoqing Wang, Alexander A Cohen, Rachel P Galimidi, Harry B Gristick, Grant J Jensen, Pamela J Bjorkman. Proc Natl Acad Sci U S A 2016
90
50

UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
50


Structural insights on the role of antibodies in HIV-1 vaccine and therapy.
Anthony P West, Louise Scharf, Johannes F Scheid, Florian Klein, Pamela J Bjorkman, Michel C Nussenzweig. Cell 2014
245
50

Asymmetric opening of HIV-1 Env bound to CD4 and a coreceptor-mimicking antibody.
Zhi Yang, Haoqing Wang, Albert Z Liu, Harry B Gristick, Pamela J Bjorkman. Nat Struct Mol Biol 2019
15
50

Broadly Neutralizing Antibody 8ANC195 Recognizes Closed and Open States of HIV-1 Env.
Louise Scharf, Haoqing Wang, Han Gao, Songye Chen, Alasdair W McDowall, Pamela J Bjorkman. Cell 2015
101
50

Partially Open HIV-1 Envelope Structures Exhibit Conformational Changes Relevant for Coreceptor Binding and Fusion.
Haoqing Wang, Christopher O Barnes, Zhi Yang, Michel C Nussenzweig, Pamela J Bjorkman. Cell Host Microbe 2018
48
50

DEER Spectroscopy Measurements Reveal Multiple Conformations of HIV-1 SOSIP Envelopes that Show Similarities with Envelopes on Native Virions.
Beth M Stadtmueller, Michael D Bridges, Kim-Marie Dam, Michael T Lerch, Kathryn E Huey-Tubman, Wayne L Hubbell, Pamela J Bjorkman. Immunity 2018
36
50

A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic β-Hairpin Structure.
Jeong Hyun Lee, Raiees Andrabi, Ching-Yao Su, Anila Yasmeen, Jean-Philippe Julien, Leopold Kong, Nicholas C Wu, Ryan McBride, Devin Sok, Matthias Pauthner,[...]. Immunity 2017
139
50

Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques.
P J Klasse, Thomas J Ketas, Christopher A Cottrell, Gabriel Ozorowski, Gargi Debnath, Diawoye Camara, Erik Francomano, Pavel Pugach, Rajesh P Ringe, Celia C LaBranche,[...]. PLoS Pathog 2018
68
50

Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike.
Gabriel Ozorowski, Jesper Pallesen, Natalia de Val, Dmitry Lyumkis, Christopher A Cottrell, Jonathan L Torres, Jeffrey Copps, Robyn L Stanfield, Albert Cupo, Pavel Pugach,[...]. Nature 2017
149
50

Native-like Env trimers as a platform for HIV-1 vaccine design.
Rogier W Sanders, John P Moore. Immunol Rev 2017
155
50

Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice.
Amelia Escolano, Jon M Steichen, Pia Dosenovic, Daniel W Kulp, Jovana Golijanin, Devin Sok, Natalia T Freund, Alexander D Gitlin, Thiago Oliveira, Tatsuya Araki,[...]. Cell 2016
196
50

Identification of a CD4-Binding-Site Antibody to HIV that Evolved Near-Pan Neutralization Breadth.
Jinghe Huang, Byong H Kang, Elise Ishida, Tongqing Zhou, Trevor Griesman, Zizhang Sheng, Fan Wu, Nicole A Doria-Rose, Baoshan Zhang, Krisha McKee,[...]. Immunity 2016
209
25

Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements.
Rory Henderson, Maolin Lu, Ye Zhou, Zekun Mu, Robert Parks, Qifeng Han, Allen L Hsu, Elizabeth Carter, Scott C Blanchard, R J Edwards,[...]. Nat Commun 2020
22
25

DEER distance measurements on proteins.
Gunnar Jeschke. Annu Rev Phys Chem 2012
607
25

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
25

Addressing preferred specimen orientation in single-particle cryo-EM through tilting.
Yong Zi Tan, Philip R Baldwin, Joseph H Davis, James R Williamson, Clinton S Potter, Bridget Carragher, Dmitry Lyumkis. Nat Methods 2017
325
25

Strategies for a multi-stage neutralizing antibody-based HIV vaccine.
Raiees Andrabi, Jinal N Bhiman, Dennis R Burton. Curr Opin Immunol 2018
53
25

Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody.
Rui Kong, Kai Xu, Tongqing Zhou, Priyamvada Acharya, Thomas Lemmin, Kevin Liu, Gabriel Ozorowski, Cinque Soto, Justin D Taft, Robert T Bailer,[...]. Science 2016
213
25

Technological advances in site-directed spin labeling of proteins.
Wayne L Hubbell, Carlos J López, Christian Altenbach, Zhongyu Yang. Curr Opin Struct Biol 2013
190
25

Plug-and-Display: decoration of Virus-Like Particles via isopeptide bonds for modular immunization.
Karl D Brune, Darren B Leneghan, Iona J Brian, Andrew S Ishizuka, Martin F Bachmann, Simon J Draper, Sumi Biswas, Mark Howarth. Sci Rep 2016
174
25

Inference of macromolecular assemblies from crystalline state.
Evgeny Krissinel, Kim Henrick. J Mol Biol 2007
25


Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies.
Laura E McCoy, Marit J van Gils, Gabriel Ozorowski, Terrence Messmer, Bryan Briney, James E Voss, Daniel W Kulp, Matthew S Macauley, Devin Sok, Matthias Pauthner,[...]. Cell Rep 2016
151
25

Progress toward active or passive HIV-1 vaccination.
Amelia Escolano, Pia Dosenovic, Michel C Nussenzweig. J Exp Med 2017
87
25

Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody.
P D Kwong, R Wyatt, J Robinson, R W Sweet, J Sodroski, W A Hendrickson. Nature 1998
25

Integration, scaling, space-group assignment and post-refinement.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
25

The quest for an antibody-based HIV vaccine.
Barton F Haynes, John R Mascola. Immunol Rev 2017
67
25

XDS.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
25

The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates.
H Choe, M Farzan, Y Sun, N Sullivan, B Rollins, P D Ponath, L Wu, C R Mackay, G LaRosa, W Newman,[...]. Cell 1996
25

Site-directed spin labeling of a genetically encoded unnatural amino acid.
Mark R Fleissner, Eric M Brustad, Tamás Kálai, Christian Altenbach, Duilio Cascio, Francis B Peters, Kálmán Hideg, Sebastian Peuker, Peter G Schultz, Wayne L Hubbell. Proc Natl Acad Sci U S A 2009
163
25

Structural definition of a conserved neutralization epitope on HIV-1 gp120.
Tongqing Zhou, Ling Xu, Barna Dey, Ann J Hessell, Donald Van Ryk, Shi-Hua Xiang, Xinzhen Yang, Mei-Yun Zhang, Michael B Zwick, James Arthos,[...]. Nature 2007
621
25

Glycan Masking Focuses Immune Responses to the HIV-1 CD4-Binding Site and Enhances Elicitation of VRC01-Class Precursor Antibodies.
Hongying Duan, Xuejun Chen, Jeffrey C Boyington, Cheng Cheng, Yi Zhang, Alexander J Jafari, Tyler Stephens, Yaroslav Tsybovsky, Oleksandr Kalyuzhniy, Peng Zhao,[...]. Immunity 2018
64
25

CTFFIND4: Fast and accurate defocus estimation from electron micrographs.
Alexis Rohou, Nikolaus Grigorieff. J Struct Biol 2015
25

Crystal structures of trimeric HIV envelope with entry inhibitors BMS-378806 and BMS-626529.
Marie Pancera, Yen-Ting Lai, Tatsiana Bylund, Aliaksandr Druz, Sandeep Narpala, Sijy O'Dell, Arne Schön, Robert T Bailer, Gwo-Yu Chuang, Hui Geng,[...]. Nat Chem Biol 2017
70
25


Real-space refinement in PHENIX for cryo-EM and crystallography.
Pavel V Afonine, Billy K Poon, Randy J Read, Oleg V Sobolev, Thomas C Terwilliger, Alexandre Urzhumtsev, Paul D Adams. Acta Crystallogr D Struct Biol 2018
809
25

Isolation of single HIV-1 Envelope specific B cells and antibody cloning from immunized rhesus macaques.
Zijun Wang, Julia Merkenschlager, Spencer T Chen, Thiago Y Oliveira, Victor Ramos, Kristie M Gordon, Kai-Hui Yao, Mila Jankovic, Michel Nussenzweig, Amelia Escolano. J Immunol Methods 2020
11
25



PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations.
Todd J Dolinsky, Paul Czodrowski, Hui Li, Jens E Nielsen, Jan H Jensen, Gerhard Klebe, Nathan A Baker. Nucleic Acids Res 2007
25

Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120.
Anthony P West, Ron Diskin, Michel C Nussenzweig, Pamela J Bjorkman. Proc Natl Acad Sci U S A 2012
164
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.