A citation-based method for searching scientific literature

Arlou Kristina Angeles, Florian Janke, Simone Bauer, Petros Christopoulos, Anja Lisa Riediger, Holger Sültmann. Cancers (Basel) 2021
Times Cited: 4







List of co-cited articles
8 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Combined targeted DNA and RNA sequencing of advanced NSCLC in routine molecular diagnostics: Analysis of the first 3,000 Heidelberg cases.
Anna-Lena Volckmar, Jonas Leichsenring, Martina Kirchner, Petros Christopoulos, Olaf Neumann, Jan Budczies, Cristiano Manuel Morais de Oliveira, Eugen Rempel, Ivo Buchhalter, Regine Brandt,[...]. Int J Cancer 2019
59
75

Personalized circulating tumor DNA analysis as a predictive biomarker in solid tumor patients treated with pembrolizumab.
Scott V Bratman, S Y Cindy Yang, Marco A J Iafolla, Zhihui Liu, Aaron R Hansen, Philippe L Bedard, Stephanie Lheureux, Anna Spreafico, Albiruni Abdul Razak, Svetlana Shchegrova,[...]. Nat Cancer 2020
98
50

Early identification of disease progression in ALK-rearranged lung cancer using circulating tumor DNA analysis.
Arlou Kristina Angeles, Petros Christopoulos, Zhao Yuan, Simone Bauer, Florian Janke, Simon John Ogrodnik, Martin Reck, Matthias Schlesner, Michael Meister, Marc A Schneider,[...]. NPJ Precis Oncol 2021
6
50

Longitudinal therapy monitoring of ALK-positive lung cancer by combined copy number and targeted mutation profiling of cell-free DNA.
Steffen Dietz, Petros Christopoulos, Zhao Yuan, Arlou Kristina Angeles, Lisa Gu, Anna-Lena Volckmar, Simon J Ogrodnik, Florian Janke, Chiara Dalle Fratte, Tomasz Zemojtel,[...]. EBioMedicine 2020
22
50

Comprehensive serial biobanking in advanced NSCLC: feasibility, challenges and perspectives.
Sabine Wessels, Thomas Muley, Petros Christopoulos, Michael Meister, Ingrid Heinzmann-Groth, Arne Warth, Esther Herpel, Simone Hummler, Ursula Klingmüller, Jonas Kuon,[...]. Transl Lung Cancer Res 2020
7
50

Association of the advanced lung cancer inflammation index (ALI) with immune checkpoint inhibitor efficacy in patients with advanced non-small-cell lung cancer.
G Mountzios, E Samantas, K Senghas, E Zervas, J Krisam, K Samitas, F Bozorgmehr, J Kuon, S Agelaki, S Baka,[...]. ESMO Open 2021
13
50

Large cell neuroendocrine lung carcinoma induces peripheral T-cell repertoire alterations with predictive and prognostic significance.
Petros Christopoulos, Marc A Schneider, Farastuk Bozorgmehr, Jonas Kuon, Walburga Engel-Riedel, Jens Kollmeier, Volker Baum, Thomas Muley, Philipp A Schnabel, Helge Bischoff,[...]. Lung Cancer 2018
15
50

A blood-based miRNA signature with prognostic value for overall survival in advanced stage non-small cell lung cancer treated with immunotherapy.
Timothy Rajakumar, Rastislav Horos, Julia Jehn, Judith Schenz, Thomas Muley, Oana Pelea, Sarah Hofmann, Paul Kittner, Mustafa Kahraman, Marco Heuvelman,[...]. NPJ Precis Oncol 2022
4
50

Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas.
Yu Hou, Huahu Guo, Chen Cao, Xianlong Li, Boqiang Hu, Ping Zhu, Xinglong Wu, Lu Wen, Fuchou Tang, Yanyi Huang,[...]. Cell Res 2016
324
25

Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing.
Zaka Wing-Sze Yuen, Akanksha Srivastava, Runa Daniel, Dennis McNevin, Cameron Jack, Eduardo Eyras. Nat Commun 2021
23
25


The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.
Miten Jain, Hugh E Olsen, Benedict Paten, Mark Akeson. Genome Biol 2016
524
25

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
25

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome.
Juan Sandoval, Holger Heyn, Sebastian Moran, Jordi Serra-Musach, Miguel A Pujana, Marina Bibikova, Manel Esteller. Epigenetics 2011
699
25


Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors.
Winston Timp, Hector Corrada Bravo, Oliver G McDonald, Michael Goggins, Chris Umbricht, Martha Zeiger, Andrew P Feinberg, Rafael A Irizarry. Genome Med 2014
113
25

Quantitative comparison of within-sample heterogeneity scores for DNA methylation data.
Michael Scherer, Almut Nebel, Andre Franke, Jörn Walter, Thomas Lengauer, Christoph Bock, Fabian Müller, Markus List. Nucleic Acids Res 2020
16
25


Statistical and integrative system-level analysis of DNA methylation data.
Andrew E Teschendorff, Caroline L Relton. Nat Rev Genet 2018
141
25


Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR.
Yunshun Chen, Bhupinder Pal, Jane E Visvader, Gordon K Smyth. F1000Res 2017
35
25

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.
Sébastien A Smallwood, Heather J Lee, Christof Angermueller, Felix Krueger, Heba Saadeh, Julian Peat, Simon R Andrews, Oliver Stegle, Wolf Reik, Gavin Kelsey. Nat Methods 2014
596
25

Identification of active regulatory regions from DNA methylation data.
Lukas Burger, Dimos Gaidatzis, Dirk Schübeler, Michael B Stadler. Nucleic Acids Res 2013
122
25

Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.
Miao Yu, Gary C Hon, Keith E Szulwach, Chun-Xiao Song, Peng Jin, Bing Ren, Chuan He. Nat Protoc 2012
151
25

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.
Andrew E Jaffe, Peter Murakami, Hwajin Lee, Jeffrey T Leek, M Daniele Fallin, Andrew P Feinberg, Rafael A Irizarry. Int J Epidemiol 2012
397
25

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.
Gabriella Ficz, Miguel R Branco, Stefanie Seisenberger, Fátima Santos, Felix Krueger, Timothy A Hore, C Joana Marques, Simon Andrews, Wolf Reik. Nature 2011
817
25

Review of processing and analysis methods for DNA methylation array data.
C S Wilhelm-Benartzi, D C Koestler, M R Karagas, J M Flanagan, B C Christensen, K T Kelsey, C J Marsit, E A Houseman, R Brown. Br J Cancer 2013
114
25

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Andrew E Teschendorff, Charles E Breeze, Shijie C Zheng, Stephan Beck. BMC Bioinformatics 2017
153
25

Simultaneous profiling of transcriptome and DNA methylome from a single cell.
Youjin Hu, Kevin Huang, Qin An, Guizhen Du, Ganlu Hu, Jinfeng Xue, Xianmin Zhu, Cun-Yu Wang, Zhigang Xue, Guoping Fan. Genome Biol 2016
156
25

Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine.
Michael J Booth, Tobias W B Ost, Dario Beraldi, Neil M Bell, Miguel R Branco, Wolf Reik, Shankar Balasubramanian. Nat Protoc 2013
202
25

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.
Nimrod Rappoport, Ron Shamir. Nucleic Acids Res 2018
145
25

Sarcoma classification by DNA methylation profiling.
Christian Koelsche, Daniel Schrimpf, Damian Stichel, Martin Sill, Felix Sahm, David E Reuss, Mirjam Blattner, Barbara Worst, Christoph E Heilig, Katja Beck,[...]. Nat Commun 2021
105
25

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
578
25

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
Altuna Akalin, Matthias Kormaksson, Sheng Li, Francine E Garrett-Bakelman, Maria E Figueroa, Ari Melnick, Christopher E Mason. Genome Biol 2012
885
25

EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data.
Andrew E Teschendorff, Tianyu Zhu, Charles E Breeze, Stephan Beck. Genome Biol 2020
20
25

Epigenomic analysis of multilineage differentiation of human embryonic stem cells.
Wei Xie, Matthew D Schultz, Ryan Lister, Zhonggang Hou, Nisha Rajagopal, Pradipta Ray, John W Whitaker, Shulan Tian, R David Hawkins, Danny Leung,[...]. Cell 2013
507
25

MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data.
Guillermo Barturen, Antonio Rueda, José L Oliver, Michael Hackenberg. F1000Res 2013
24
25

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
25

Multi-omics Data Integration, Interpretation, and Its Application.
Indhupriya Subramanian, Srikant Verma, Shiva Kumar, Abhay Jere, Krishanpal Anamika. Bioinform Biol Insights 2020
247
25

Analysing and interpreting DNA methylation data.
Christoph Bock. Nat Rev Genet 2012
344
25

Cell-free DNA in cancer: current insights.
Heidi Fettke, Edmond M Kwan, Arun A Azad. Cell Oncol (Dordr) 2019
24
25

gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.
Angelika Merkel, Marcos Fernández-Callejo, Eloi Casals, Santiago Marco-Sola, Ronald Schuyler, Ivo G Gut, Simon C Heath. Bioinformatics 2019
17
25

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
25

Infinium DNA Methylation Microarrays on Formalin-Fixed, Paraffin-Embedded Samples.
Sebastian Moran, Manel Esteller. Methods Mol Biol 2018
3
33

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data.
Camila P E de Souza, Mirela Andronescu, Tehmina Masud, Farhia Kabeer, Justina Biele, Emma Laks, Daniel Lai, Patricia Ye, Jazmine Brimhall, Beixi Wang,[...]. PLoS Comput Biol 2020
9
25

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.
Christof Angermueller, Stephen J Clark, Heather J Lee, Iain C Macaulay, Mabel J Teng, Tim Xiaoming Hu, Felix Krueger, Sebastien Smallwood, Chris P Ponting, Thierry Voet,[...]. Nat Methods 2016
382
25

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.
Chongyuan Luo, Christopher L Keown, Laurie Kurihara, Jingtian Zhou, Yupeng He, Junhao Li, Rosa Castanon, Jacinta Lucero, Joseph R Nery, Justin P Sandoval,[...]. Science 2017
232
25

Long-read whole-genome methylation patterning using enzymatic base conversion and nanopore sequencing.
Yoshitaka Sakamoto, Suzuko Zaha, Satoi Nagasawa, Shuhei Miyake, Yasuyuki Kojima, Ayako Suzuki, Yutaka Suzuki, Masahide Seki. Nucleic Acids Res 2021
11
25


RaMWAS: fast methylome-wide association study pipeline for enrichment platforms.
Andrey A Shabalin, Mohammad W Hattab, Shaunna L Clark, Robin F Chan, Gaurav Kumar, Karolina A Aberg, Edwin J C G van den Oord. Bioinformatics 2018
29
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.