A citation-based method for searching scientific literature

Luca Zardoni, Eleonora Nardini, Alessandra Brambati, Chiara Lucca, Ramveer Choudhary, Federica Loperfido, Simone Sabbioneda, Giordano Liberi. Nucleic Acids Res 2021
Times Cited: 5







List of co-cited articles
14 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
100
60

R Loops and Their Composite Cancer Connections.
James P Wells, Justin White, Peter C Stirling. Trends Cancer 2019
18
40

Maintaining genome stability at the replication fork.
Dana Branzei, Marco Foiani. Nat Rev Mol Cell Biol 2010
584
40

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
259
40

R-loops: formation, function, and relevance to cell stress.
David F Allison, Gang Greg Wang. Cell Stress 2019
41
40

Rates of in situ transcription and splicing in large human genes.
Jarnail Singh, Richard A Padgett. Nat Struct Mol Biol 2009
298
40

DNA damage sensing by the ATM and ATR kinases.
Alexandre Maréchal, Lee Zou. Cold Spring Harb Perspect Biol 2013
721
40

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
310
40

Introns Protect Eukaryotic Genomes from Transcription-Associated Genetic Instability.
Amandine Bonnet, Ana R Grosso, Abdessamad Elkaoutari, Emeline Coleno, Adrien Presle, Sreerama C Sridhara, Guilhem Janbon, Vincent Géli, Sérgio F de Almeida, Benoit Palancade. Mol Cell 2017
66
40

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
183
40

ATR Protects the Genome against R Loops through a MUS81-Triggered Feedback Loop.
Dominick A Matos, Jia-Min Zhang, Jian Ouyang, Hai Dang Nguyen, Marie-Michelle Genois, Lee Zou. Mol Cell 2020
47
40

The dark side of RNA:DNA hybrids.
Alessandra Brambati, Luca Zardoni, Eleonora Nardini, Achille Pellicioli, Giordano Liberi. Mutat Res Rev Mutat Res 2020
19
40

ATM and ATR signaling at a glance.
Poorwa Awasthi, Marco Foiani, Amit Kumar. J Cell Sci 2015
151
40

DNA Damage Triggers a New Phase in Neurodegeneration.
Fabio Pessina, Ubaldo Gioia, Ornella Brandi, Stefania Farina, Marta Ceccon, Sofia Francia, Fabrizio d'Adda di Fagagna. Trends Genet 2021
14
40

Asymmetry of DNA replication fork progression in Werner's syndrome.
Ana M Rodríguez-López, Dean A Jackson, Francisco Iborra, Lynne S Cox. Aging Cell 2002
94
20

Inducible SMARCAL1 knockdown in iPSC reveals a link between replication stress and altered expression of master differentiation genes.
Giusj Monia Pugliese, Federico Salaris, Valentina Palermo, Veronica Marabitti, Nicolò Morina, Alessandro Rosa, Annapaola Franchitto, Pietro Pichierri. Dis Model Mech 2019
7
20

RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.
Claudia Ribeiro de Almeida, Somdutta Dhir, Ashish Dhir, Amin E Moghaddam, Quentin Sattentau, Anton Meinhart, Nicholas J Proudfoot. Mol Cell 2018
81
20

Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
190
20

Werner helicase relocates into nuclear foci in response to DNA damaging agents and co-localizes with RPA and Rad51.
S Sakamoto, K Nishikawa, S J Heo, M Goto, Y Furuichi, A Shimamoto. Genes Cells 2001
148
20

ATR-dependent phosphorylation of FANCM at serine 1045 is essential for FANCM functions.
Thiyam Ramsing Singh, Abdullah Mahmood Ali, Manikandan Paramasivam, Arun Pradhan, Kebola Wahengbam, Michael M Seidman, Amom Ruhikanta Meetei. Cancer Res 2013
43
20

Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells.
Chiara Conti, Barbara Saccà, John Herrick, Claude Lalou, Yves Pommier, Aaron Bensimon. Mol Biol Cell 2007
154
20



Genomic instability--an evolving hallmark of cancer.
Simona Negrini, Vassilis G Gorgoulis, Thanos D Halazonetis. Nat Rev Mol Cell Biol 2010
20

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
229
20

A novel protein interacts with the Werner's syndrome gene product physically and functionally.
Kawabe Yi, D Branzei, T Hayashi, H Suzuki, T Masuko, F Onoda, S J Heo, H Ikeda, A Shimamoto, Y Furuichi,[...]. J Biol Chem 2001
54
20

Werner syndrome protein. I. DNA helicase and dna exonuclease reside on the same polypeptide.
J C Shen, M D Gray, J Oshima, A S Kamath-Loeb, M Fry, L A Loeb. J Biol Chem 1998
207
20

Physical and functional interaction between WRNIP1 and RAD18.
Akari Yoshimura, Masayuki Seki, Makoto Kanamori, Satoshi Tateishi, Toshiki Tsurimoto, Shusuke Tada, Takemi Enomoto. Genes Genet Syst 2009
24
20

R-loop generation during transcription: Formation, processing and cellular outcomes.
Boris P Belotserkovskii, Silvia Tornaletti, Alicia D D'Souza, Philip C Hanawalt. DNA Repair (Amst) 2018
55
20

RECQ-like helicases Sgs1 and BLM regulate R-loop-associated genome instability.
Emily Yun-Chia Chang, Carolina A Novoa, Maria J Aristizabal, Yan Coulombe, Romulo Segovia, Richa Chaturvedi, Yaoqing Shen, Christelle Keong, Annie S Tam, Steven J M Jones,[...]. J Cell Biol 2017
59
20

Yeast Sen1 helicase protects the genome from transcription-associated instability.
Hannah E Mischo, Belén Gómez-González, Pawel Grzechnik, Ana G Rondón, Wu Wei, Lars Steinmetz, Andrés Aguilera, Nick J Proudfoot. Mol Cell 2011
248
20

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
183
20

The DEAD-box protein Dbp2p is linked to noncoding RNAs, the helicase Sen1p, and R-loops.
Frank A Tedeschi, Sara C Cloutier, Elizabeth J Tran, Eckhard Jankowsky. RNA 2018
15
20

Binding of FANCI-FANCD2 Complex to RNA and R-Loops Stimulates Robust FANCD2 Monoubiquitination.
Zhuobin Liang, Fengshan Liang, Yaqun Teng, Xiaoyong Chen, Jingchun Liu, Simonne Longerich, Timsi Rao, Allison M Green, Natalie B Collins, Yong Xiong,[...]. Cell Rep 2019
29
20


Vertebrate WRNIP1 and BLM are required for efficient maintenance of genome stability.
Tomoko Hayashi, Masayuki Seki, Eri Inoue, Akari Yoshimura, Yumiko Kusa, Shusuke Tada, Takemi Enomoto. Genes Genet Syst 2008
14
20


RECQ5-dependent SUMOylation of DNA topoisomerase I prevents transcription-associated genome instability.
Min Li, Subhash Pokharel, Jiin-Tarng Wang, Xiaohua Xu, Yilun Liu. Nat Commun 2015
37
20


The causes of replication stress and their consequences on genome stability and cell fate.
Indiana Magdalou, Bernard S Lopez, Philippe Pasero, Sarah A E Lambert. Semin Cell Dev Biol 2014
87
20

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
601
20

Transcription as a Threat to Genome Integrity.
Hélène Gaillard, Andrés Aguilera. Annu Rev Biochem 2016
106
20

Phosphorylation of the Bloom's syndrome helicase and its role in recovery from S-phase arrest.
Sally L Davies, Phillip S North, Alwyn Dart, Nicholas D Lakin, Ian D Hickson. Mol Cell Biol 2004
164
20

Werner syndrome helicase activity is essential in maintaining fragile site stability.
Livia Maria Pirzio, Pietro Pichierri, Margherita Bignami, Annapaola Franchitto. J Cell Biol 2008
80
20

Human Werner helicase interacting protein 1 (WRNIP1) functions as a novel modulator for DNA polymerase delta.
Toshiki Tsurimoto, Ayako Shinozaki, Masaki Yano, Masayuki Seki, Takemi Enomoto. Genes Cells 2005
53
20

WRN helicase regulates the ATR-CHK1-induced S-phase checkpoint pathway in response to topoisomerase-I-DNA covalent complexes.
Birija Sankar Patro, Rikke Frøhlich, Vilhelm A Bohr, Tinna Stevnsner. J Cell Sci 2011
37
20

ATR regulates fragile site stability.
Anne M Casper, Paul Nghiem, Martin F Arlt, Thomas W Glover. Cell 2002
446
20

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
266
20

Replication Fork Protection Factors Controlling R-Loop Bypass and Suppression.
Emily Yun-Chia Chang, Peter C Stirling. Genes (Basel) 2017
26
20



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.