A citation-based method for searching scientific literature

Michele Fratello, Luca Cattelani, Antonio Federico, Alisa Pavel, Giovanni Scala, Angela Serra, Dario Greco. Methods Mol Biol 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DMET-analyzer: automatic analysis of Affymetrix DMET data.
Pietro Hiram Guzzi, Giuseppe Agapito, Maria Teresa Di Martino, Mariamena Arbitrio, Pierfrancesco Tassone, Pierosandro Tagliaferri, Mario Cannataro. BMC Bioinformatics 2012
36
100


Crosstalk between Estrogen Signaling and Breast Cancer Metabolism.
Eylem Kulkoyluoglu-Cotul, Alexandra Arca, Zeynep Madak-Erdogan. Trends Endocrinol Metab 2019
52
100

Computational identification of physicochemical signatures for host tropism of influenza A virus.
Rui Yin, Xinrui Zhou, Jie Zheng, Chee Keong Kwoh. J Bioinform Comput Biol 2018
9
100

A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data.
Reinel Tabares-Soto, Simon Orozco-Arias, Victor Romero-Cano, Vanesa Segovia Bucheli, José Luis Rodríguez-Sotelo, Cristian Felipe Jiménez-Varón. PeerJ Comput Sci 2020
13
100

A primer on gene expression and microarrays for machine learning researchers.
Winston Patrick Kuo, Eun-Young Kim, Jeff Trimarchi, Tor-Kristian Jenssen, Staal A Vinterbo, Lucila Ohno-Machado. J Biomed Inform 2004
11
100

Signal transducer and activator of transcription 5 as a key signaling pathway in normal mammary gland developmental biology and breast cancer.
Priscilla A Furth, Rebecca E Nakles, Sarah Millman, Edgar S Diaz-Cruz, M Carla Cabrera. Breast Cancer Res 2011
75
100

Genetic variants associated with gastrointestinal symptoms in Fabry disease.
Maria Teresa Di Martino, Francesca Scionti, Simona Sestito, Angela Nicoletti, Mariamena Arbitrio, Pietro Hiram Guzzi, Valentina Talarico, Federica Altomare, Maria Teresa Sanseviero, Giuseppe Agapito,[...]. Oncotarget 2016
21
100

Analyzing microarray data using cluster analysis.
William Shannon, Robert Culverhouse, Jill Duncan. Pharmacogenomics 2003
77
100

Catalpol induces apoptosis in breast cancer in vitro and in vivo: Involvement of mitochondria apoptosis pathway and post-translational modifications.
Jierong Liu, Jikun Du, Yuanhua Li, Fuwei Wang, Daibo Song, Jiantao Lin, Baohong Li, Li Li. Toxicol Appl Pharmacol 2022
1
100

NCBI GEO: mining millions of expression profiles--database and tools.
Tanya Barrett, Tugba O Suzek, Dennis B Troup, Stephen E Wilhite, Wing-Chi Ngau, Pierre Ledoux, Dmitry Rudnev, Alex E Lash, Wataru Fujibuchi, Ron Edgar. Nucleic Acids Res 2005
734
100



BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.
Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro. Bioinformatics 2020
10
100

Gene selection from microarray data for cancer classification--a machine learning approach.
Yu Wang, Igor V Tetko, Mark A Hall, Eibe Frank, Axel Facius, Klaus F X Mayer, Hans W Mewes. Comput Biol Chem 2005
107
100

DNA microarray technology: devices, systems, and applications.
Michael J Heller. Annu Rev Biomed Eng 2002
566
100


Filtering for increased power for microarray data analysis.
Amber J Hackstadt, Ann M Hess. BMC Bioinformatics 2009
151
100


Visual data mining of biological networks: one size does not fit all.
Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica. PLoS Comput Biol 2013
10
100

DMET-Miner: Efficient discovery of association rules from pharmacogenomic data.
Giuseppe Agapito, Pietro H Guzzi, Mario Cannataro. J Biomed Inform 2015
19
100


Computational analysis of microarray data.
J Quackenbush. Nat Rev Genet 2001
788
100

DNA microarrays.
Frank F Bier, Markus von Nickisch-Rosenegk, Eva Ehrentreich-Förster, Edda Reiss, Jörg Henkel, Rothin Strehlow, Dennie Andresen. Adv Biochem Eng Biotechnol 2008
33
100


NCBI GEO: mining tens of millions of expression profiles--database and tools update.
Tanya Barrett, Dennis B Troup, Stephen E Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F Kim, Alexandra Soboleva, Maxim Tomashevsky, Ron Edgar. Nucleic Acids Res 2007
950
100


Silencing prion protein in MDA-MB-435 breast cancer cells leads to pleiotropic cellular responses to cytotoxic stimuli.
Guohua Yu, Liming Jiang, Yuanyuan Xu, Hongwei Guo, Huiyan Liu, Yi Zhang, Huaiyi Yang, Chonggang Yuan, Jiyan Ma. PLoS One 2012
11
100

Polymorphic Variants in NR1I3 and UGT2B7 Predict Taxane Neurotoxicity and Have Prognostic Relevance in Patients With Breast Cancer: A Case-Control Study.
Mariamena Arbitrio, Francesca Scionti, Emanuela Altomare, Maria Teresa Di Martino, Giuseppe Agapito, Teresa Galeano, Nicoletta Staropoli, Eleonora Iuliano, Francesco Grillone, Fernanda Fabiani,[...]. Clin Pharmacol Ther 2019
19
100

The immune system and inflammation in breast cancer.
Xinguo Jiang, David J Shapiro. Mol Cell Endocrinol 2014
137
100


pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica. Nucleic Acids Res 2020
33
100

Risk Alleles for Multiple Myeloma Susceptibility in ADME Genes.
Francesca Scionti, Giuseppe Agapito, Daniele Caracciolo, Caterina Riillo, Katia Grillone, Mario Cannataro, Maria Teresa Di Martino, Pierosandro Tagliaferri, Pierfrancesco Tassone, Mariamena Arbitrio. Cells 2022
2
100

Statistical challenges in preprocessing in microarray experiments in cancer.
Kouros Owzar, William T Barry, Sin-Ho Jung, Insuk Sohn, Stephen L George. Clin Cancer Res 2008
31
100

miRNAs in lung cancer - studying complex fingerprints in patient's blood cells by microarray experiments.
Andreas Keller, Petra Leidinger, Anne Borries, Anke Wendschlag, Frank Wucherpfennig, Matthias Scheffler, Hanno Huwer, Hans-Peter Lenhof, Eckart Meese. BMC Cancer 2009
124
100

Protein-protein interaction site prediction through combining local and global features with deep neural networks.
Min Zeng, Fuhao Zhang, Fang-Xiang Wu, Yaohang Li, Jianxin Wang, Min Li. Bioinformatics 2020
64
100

Ribosomal RNA Transcription Regulation in Breast Cancer.
Cecelia M Harold, Amber F Buhagiar, Yan Cheng, Susan J Baserga. Genes (Basel) 2021
7
100

Microarray analysis of gene expression: considerations in data mining and statistical treatment.
Joseph S Verducci, Vincent F Melfi, Shili Lin, Zailong Wang, Sashwati Roy, Chandan K Sen. Physiol Genomics 2006
43
100

Identification of polymorphic variants associated with erlotinib-related skin toxicity in advanced non-small cell lung cancer patients by DMET microarray analysis.
Mariamena Arbitrio, Maria Teresa Di Martino, Vito Barbieri, Giuseppe Agapito, Pietro Hiram Guzzi, Cirino Botta, Eleonora Iuliano, Francesca Scionti, Emanuela Altomare, Stefania Codispoti,[...]. Cancer Chemother Pharmacol 2016
26
100

Identification of useful genes from multiple microarrays for ulcerative colitis diagnosis based on machine learning methods.
Lin Zhang, Rui Mao, Chung Tai Lau, Wai Chak Chung, Jacky C P Chan, Feng Liang, Chenchen Zhao, Xuan Zhang, Zhaoxiang Bian. Sci Rep 2022
3
100

DMET™ (Drug Metabolism Enzymes and Transporters): a pharmacogenomic platform for precision medicine.
Mariamena Arbitrio, Maria Teresa Di Martino, Francesca Scionti, Giuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro, Pierfrancesco Tassone, Pierosandro Tagliaferri. Oncotarget 2016
42
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.