A citation-based method for searching scientific literature

Ineke L Tan, Rodrigo Coutinho de Almeida, Rutger Modderman, Anna Stachurska, Jackie Dekens, Donatella Barisani, Caroline R Meijer, María Roca, Eva Martinez-Ojinaga, Raanan Shamir, Renata Auricchio, Ilma R Korponay-Szabó, Gemma Castillejo, Hania Szajewska, Sibylle Koletzko, Alexandra Zhernakova, Vinod Kumar, Yang Li, Marijn C Visschedijk, Rinse K Weersma, Riccardo Troncone, M Luisa Mearin, Cisca Wijmenga, Iris Jonkers, Sebo Withoff. Front Immunol 2021
Times Cited: 3







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A miRNA-Based Blood and Mucosal Approach for Detecting and Monitoring Celiac Disease.
Karla A Bascuñán, Francisco Pérez-Bravo, Gabriella Gaudioso, Valentina Vaira, Leda Roncoroni, Luca Elli, Erika Monguzzi, Magdalena Araya. Dig Dis Sci 2020
16
66

Expression of Selected Genes and Circulating microRNAs in Patients with Celiac Disease.
Elena Maria Domsa, Ioana Berindan-Neagoe, Livia Budisan, Cornelia Braicu, Ioana Para, Alina Ioana Tantau, Olga Hilda Orasan, Lidia Ciobanu, Teodora Atena Pop, Gabriela Adriana Filip,[...]. Medicina (Kaunas) 2022
2
100

Intestinal and Circulating MicroRNAs in Coeliac Disease.
Cristina Felli, Antonella Baldassarre, Andrea Masotti. Int J Mol Sci 2017
16
66

miRNA-regulated gene expression differs in celiac disease patients according to the age of presentation.
Gaia Buoli Comani, Roberto Panceri, Marco Dinelli, Andrea Biondi, Clara Mancuso, Raffaella Meneveri, Donatella Barisani. Genes Nutr 2015
26
66

Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts.
Laure Frésard, Craig Smail, Nicole M Ferraro, Nicole A Teran, Xin Li, Kevin S Smith, Devon Bonner, Kristin D Kernohan, Shruti Marwaha, Zachary Zappala,[...]. Nat Med 2019
104
33

Splicing profile by capture RNA-seq identifies pathogenic germline variants in tumor suppressor genes.
Tyler Landrith, Bing Li, Ashley A Cass, Blair R Conner, Holly LaDuca, Danielle B McKenna, Kara N Maxwell, Susan Domchek, Nichole A Morman, Christopher Heinlen,[...]. NPJ Precis Oncol 2020
24
33

Interpretable prioritization of splice variants in diagnostic next-generation sequencing.
Daniel Danis, Julius O B Jacobsen, Leigh C Carmody, Michael A Gargano, Julie A McMurry, Ayushi Hegde, Melissa A Haendel, Giorgio Valentini, Damian Smedley, Peter N Robinson. Am J Hum Genet 2021
4
33

Improved methods for RNAseq-based alternative splicing analysis.
Rebecca F Halperin, Apurva Hegde, Jessica D Lang, Elizabeth A Raupach, Christophe Legendre, Winnie S Liang, Patricia M LoRusso, Aleksandar Sekulic, Jeffrey A Sosman, Jeffrey M Trent,[...]. Sci Rep 2021
3
33

RNA Analysis Identifies Pathogenic Duplications in MSH2 in Patients With Lynch Syndrome.
Blair R Conner, Felicia Hernandez, Beth Souders, Tyler Landrith, C Richard Boland, Rachid Karam. Gastroenterology 2019
5
33

Identification of miR-20a-5p as Robust Normalizer for Urine microRNA Studies in Renal Cell Carcinoma and a Profile of Dysregulated microRNAs.
Julia Oto, Raquel Herranz, Emma Plana, José Vicente Sánchez-González, Javier Pérez-Ardavín, David Hervás, Álvaro Fernández-Pardo, Fernando Cana, César David Vera-Donoso, Manuel Martínez-Sarmiento,[...]. Int J Mol Sci 2021
2
50

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
Kai Wang, Mingyao Li, Hakon Hakonarson. Nucleic Acids Res 2010
33

Unusual deep intronic mutations in the COL4A5 gene cause X linked Alport syndrome.
Kathy King, Frances A Flinter, Vandana Nihalani, Peter M Green. Hum Genet 2002
77
33

The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
33

Comprehensive characterisation of intronic mis-splicing mutations in human cancers.
Hyunchul Jung, Kang Seon Lee, Jung Kyoon Choi. Oncogene 2021
6
33

Added Value of Whole-Exome and Transcriptome Sequencing for Clinical Molecular Screenings of Advanced Cancer Patients With Solid Tumors.
Florence Koeppel, Alexandre Bobard, Céline Lefebvre, Marion Pedrero, Marc Deloger, Yannick Boursin, Catherine Richon, Romy Chen-Min-Tao, Guillaume Robert, Guillaume Meurice,[...]. Cancer J 2018
11
33

Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics.
Sateesh Maddirevula, Hiroyuki Kuwahara, Nour Ewida, Hanan E Shamseldin, Nisha Patel, Fatema Alzahrani, Tarfa AlSheddi, Eman AlObeid, Mona Alenazi, Hessa S Alsaif,[...]. Genome Biol 2020
22
33

Response to Biesecker and Harrison.
C Sue Richards, Nazneen Aziz, Sherri Bale, David Bick, Soma Das, Julie Gastier-Foster, Wayne W Grody, Madhuri Hegde, Elaine Lyon, Elaine Spector,[...]. Genet Med 2018
5
33

Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results.
Sharon E Plon, Diana M Eccles, Douglas Easton, William D Foulkes, Maurizio Genuardi, Marc S Greenblatt, Frans B L Hogervorst, Nicoline Hoogerbrugge, Amanda B Spurdle, Sean V Tavtigian. Hum Mutat 2008
589
33

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
33

Replication and heritability of prostate cancer risk variants: impact of population-specific factors.
Victor Virlogeux, Rebecca E Graff, Thomas J Hoffmann, John S Witte. Cancer Epidemiol Biomarkers Prev 2015
11
33

Germline variants in cancer genes in high-risk non-BRCA patients from Puerto Rico.
Julie Dutil, Jamie K Teer, Volha Golubeva, Sean Yoder, Wei Lue Tong, Nelly Arroyo, Rachid Karam, Miguel Echenique, Jaime L Matta, Alvaro N Monteiro. Sci Rep 2019
7
33

Identification of Deep-Intronic Splice Mutations in a Large Cohort of Patients With Inherited Retinal Diseases.
Xinye Qian, Jun Wang, Meng Wang, Austin D Igelman, Kaylie D Jones, Yumei Li, Keqing Wang, Kerry E Goetz, David G Birch, Paul Yang,[...]. Front Genet 2021
11
33

Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants.
Adam M Bournazos, Lisa G Riley, Shobhana Bommireddipalli, Lesley Ades, Lauren S Akesson, Mohammad Al-Shinnag, Stephen I Alexander, Alison D Archibald, Shanti Balasubramaniam, Yemima Berman,[...]. Genet Med 2022
2
50

Role of whole exome sequencing for unidentified genetic syndromes.
Shagun Aggarwal. Curr Opin Obstet Gynecol 2021
4
33

RNA variant identification discrepancy among splice-aware alignment algorithms.
Ji Hyung Hong, Yoon Ho Ko, Keunsoo Kang. PLoS One 2018
5
33

Clinical significance and potential molecular mechanism of miRNA-222-3p in metastatic prostate cancer.
Yu Sun, Gang Chen, Juan He, Zhi-Guang Huang, Sheng-Hua Li, Yuan-Ping Yang, Lu-Yang Zhong, Shu-Fan Ji, Ying Huang, Xin-Hua Chen,[...]. Bioengineered 2021
12
33


Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Ewan Birney, John A Stamatoyannopoulos, Anindya Dutta, Roderic Guigó, Thomas R Gingeras, Elliott H Margulies, Zhiping Weng, Michael Snyder, Emmanouil T Dermitzakis, Robert E Thurman,[...]. Nature 2007
33


Massive mining of publicly available RNA-seq data from human and mouse.
Alexander Lachmann, Denis Torre, Alexandra B Keenan, Kathleen M Jagodnik, Hoyjin J Lee, Lily Wang, Moshe C Silverstein, Avi Ma'ayan. Nat Commun 2018
211
33



Spectrum of splicing variants in disease genes and the ability of RNA analysis to reduce uncertainty in clinical interpretation.
Rebecca Truty, Karen Ouyang, Susan Rojahn, Sarah Garcia, Alexandre Colavin, Barbara Hamlington, Mary Freivogel, Robert L Nussbaum, Keith Nykamp, Swaroop Aradhya. Am J Hum Genet 2021
14
33


Ancestry-specific hereditary cancer panel yields: Moving toward more personalized risk assessment.
Maegan E Roberts, Lisa R Susswein, Wanchun Janice Cheng, Natalie J Carter, Amber C Carter, Rachel T Klein, Kathleen S Hruska, Megan L Marshall. J Genet Couns 2020
7
33

The Expanding Landscape of Alternative Splicing Variation in Human Populations.
Eddie Park, Zhicheng Pan, Zijun Zhang, Lan Lin, Yi Xing. Am J Hum Genet 2018
150
33

Racial and Ethnic Disparities in Genetic Testing at a Hereditary Breast and Ovarian Cancer Center.
Eloise Chapman-Davis, Zhen Ni Zhou, Jessica C Fields, Melissa K Frey, Bailey Jordan, Katherine J Sapra, Sudeshna Chatterjee-Paer, Ann D Carlson, Kevin M Holcomb. J Gen Intern Med 2021
23
33

SpliceDB: database of canonical and non-canonical mammalian splice sites.
M Burset, I A Seledtsov, V V Solovyev. Nucleic Acids Res 2001
163
33

The histologic phenotype of lung cancers is associated with transcriptomic features rather than genomic characteristics.
Ming Tang, Hussein A Abbas, Marcelo V Negrao, Maheshwari Ramineni, Xin Hu, Shawna Marie Hubert, Junya Fujimoto, Alexandre Reuben, Susan Varghese, Jianhua Zhang,[...]. Nat Commun 2021
5
33

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.
Shihao Shen, Juw Won Park, Zhi-xiang Lu, Lan Lin, Michael D Henry, Ying Nian Wu, Qing Zhou, Yi Xing. Proc Natl Acad Sci U S A 2014
810
33

MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer.
Nan Lu, Jinhui Liu, Chengjian Ji, Yichun Wang, Zhipeng Wu, Shuning Yuan, Yan Xing, Feiyang Diao. Bioengineered 2021
7
33

Targeted splice sequencing reveals RNA toxicity and therapeutic response in myotonic dystrophy.
Matthew K Tanner, Zhenzhi Tang, Charles A Thornton. Nucleic Acids Res 2021
10
33

BRCA2 deep intronic mutation causing activation of a cryptic exon: opening toward a new preventive therapeutic strategy.
Olga Anczuków, Monique Buisson, Mélanie Léoné, Christine Coutanson, Christine Lasset, Alain Calender, Olga M Sinilnikova, Sylvie Mazoyer. Clin Cancer Res 2012
50
33

Abnormal splice in a mutant human beta-globin gene not at the site of a mutation.
C Dobkin, R G Pergolizzi, P Bahre, A Bank. Proc Natl Acad Sci U S A 1983
81
33

Bioinformatics analysis of tumor-educated platelet microRNAs in patients with hepatocellular carcinoma.
Beibei Zhu, Shanshan Gu, Xiaoting Wu, Wenyong He, Hongke Zhou. Biosci Rep 2021
2
50

Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomes.
Zishan Wang, Xiao Fan, Yufeng Shen, Meghana S Pagadala, Rebecca Signer, Kamil J Cygan, William G Fairbrother, Hannah Carter, Wendy K Chung, Kuan-Lin Huang. Genome Med 2021
1
100

Standards and Guidelines for the Interpretation and Reporting of Sequence Variants in Cancer: A Joint Consensus Recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists.
Marilyn M Li, Michael Datto, Eric J Duncavage, Shashikant Kulkarni, Neal I Lindeman, Somak Roy, Apostolia M Tsimberidou, Cindy L Vnencak-Jones, Daynna J Wolff, Anas Younes,[...]. J Mol Diagn 2017
735
33

Computational comparison of common event-based differential splicing tools: practical considerations for laboratory researchers.
Ittai B Muller, Stijn Meijers, Peter Kampstra, Steven van Dijk, Michel van Elswijk, Marry Lin, Anna M Wojtuszkiewicz, Gerrit Jansen, Robert de Jonge, Jacqueline Cloos. BMC Bioinformatics 2021
4
33

Leveraging genetic ancestry to study health disparities.
Ken Batai, Stanley Hooker, Rick A Kittles. Am J Phys Anthropol 2021
11
33

Integrative comparison of the genomic and transcriptomic landscape between prostate cancer patients of predominantly African or European genetic ancestry.
Jiao Yuan, Kevin H Kensler, Zhongyi Hu, Youyou Zhang, Tianli Zhang, Junjie Jiang, Mu Xu, Yutian Pan, Meixiao Long, Kathleen T Montone,[...]. PLoS Genet 2020
40
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.