A citation-based method for searching scientific literature


List of co-cited articles
20 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci.
Victoria J Sugrue, Joseph Alan Zoller, Pritika Narayan, Ake T Lu, Oscar J Ortega-Recalde, Matthew J Grant, C Simon Bawden, Skye R Rudiger, Amin Haghani, Donna M Bond,[...]. Elife 2021
15
50

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions.
Wanding Zhou, Timothy J Triche, Peter W Laird, Hui Shen. Nucleic Acids Res 2018
96
50

Epigenetic clock and methylation studies in elephants.
Natalia A Prado, Janine L Brown, Joseph A Zoller, Amin Haghani, Mingjia Yao, Lora R Bagryanova, Michael G Campana, Jesús E Maldonado, Ken Raj, Dennis Schmitt,[...]. Aging Cell 2021
11
50

GREAT improves functional interpretation of cis-regulatory regions.
Cory Y McLean, Dave Bristor, Michael Hiller, Shoa L Clarke, Bruce T Schaar, Craig B Lowe, Aaron M Wenger, Gill Bejerano. Nat Biotechnol 2010
50

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
33

Epigenetic clock and methylation study of oocytes from a bovine model of reproductive aging.
Paweł Kordowitzki, Amin Haghani, Joseph A Zoller, Caesar Z Li, Ken Raj, Matthew L Spangler, Steve Horvath. Aging Cell 2021
9
33

Epigenetic clock and DNA methylation analysis of porcine models of aging and obesity.
Kyle M Schachtschneider, Lawrence B Schook, Jennifer J Meudt, Dhanansayan Shanmuganayagam, Joseph A Zoller, Amin Haghani, Caesar Z Li, Joshua Zhang, Andrew Yang, Ken Raj,[...]. Geroscience 2021
9
33

An epigenetic biomarker of aging for lifespan and healthspan.
Morgan E Levine, Ake T Lu, Austin Quach, Brian H Chen, Themistocles L Assimes, Stefania Bandinelli, Lifang Hou, Andrea A Baccarelli, James D Stewart, Yun Li,[...]. Aging (Albany NY) 2018
738
33


Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
33

DNA methylation aging and transcriptomic studies in horses.
Steve Horvath, Amin Haghani, Sichong Peng, Erin N Hales, Joseph A Zoller, Ken Raj, Brenda Larison, Todd R Robeck, Jessica L Petersen, Rebecca R Bellone,[...]. Nat Commun 2022
6
33

The National NeuroAIDS Tissue Consortium: a new paradigm in brain banking with an emphasis on infectious disease.
S Morgello, B B Gelman, P B Kozlowski, H V Vinters, E Masliah, M Cornford, W Cavert, C Marra, I Grant, E J Singer. Neuropathol Appl Neurobiol 2001
126
33

An analysis of the relationship between metabolism, developmental schedules, and longevity using phylogenetic independent contrasts.
João Pedro de Magalhães, Joana Costa, George M Church. J Gerontol A Biol Sci Med Sci 2007
175
33

Epigenetic clock and methylation studies in the rhesus macaque.
Steve Horvath, Joseph A Zoller, Amin Haghani, Anna J Jasinska, Ken Raj, Charles E Breeze, Jason Ernst, Kelli L Vaughan, Julie A Mattison. Geroscience 2021
8
33

A mammalian methylation array for profiling methylation levels at conserved sequences.
Adriana Arneson, Amin Haghani, Michael J Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu, Emily Maciejewski, Mingjia Yao, Caesar Z Li, Ake T Lu,[...]. Nat Commun 2022
24
33

Epigenetic ageing is distinct from senescence-mediated ageing and is not prevented by telomerase expression.
Sylwia Kabacik, Steve Horvath, Howard Cohen, Kenneth Raj. Aging (Albany NY) 2018
39
33

Perinatally acquired HIV infection accelerates epigenetic aging in South African adolescents.
Steve Horvath, Dan J Stein, Nicole Phillips, Sarah J Heany, Michael S Kobor, David T S Lin, Landon Myer, Heather J Zar, Andrew J Levine, Jacqueline Hoare. AIDS 2018
47
33

Epigenetic clock and methylation studies in cats.
Ken Raj, Balazs Szladovits, Amin Haghani, Joseph A Zoller, Caesar Z Li, Pete Black, Dewey Maddox, Todd R Robeck, Steve Horvath. Geroscience 2021
5
40

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
33


DNA methylation predicts age and provides insight into exceptional longevity of bats.
Gerald S Wilkinson, Danielle M Adams, Amin Haghani, Ake T Lu, Joseph Zoller, Charles E Breeze, Bryan D Arnold, Hope C Ball, Gerald G Carter, Lisa Noelle Cooper,[...]. Nat Commun 2021
31
16

An atlas of dynamic chromatin landscapes in mouse fetal development.
David U Gorkin, Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee, Bin Li, Joshua Chiou, Andre Wildberg, Bo Ding,[...]. Nature 2020
96
16

DNA methylation clocks tick in naked mole rats but queens age more slowly than nonbreeders.
Steve Horvath, Amin Haghani, Nicholas Macoretta, Julia Ablaeva, Joseph A Zoller, Caesar Z Li, Joshua Zhang, Masaki Takasugi, Yang Zhao, Elena Rydkina,[...]. Nat Aging 2022
12
16

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
871
16

Targeted bisulfite sequencing for biomarker discovery.
Marco Morselli, Colin Farrell, Liudmilla Rubbi, Heather L Fehling, Rebecca Henkhaus, Matteo Pellegrini. Methods 2021
12
16

New targeted approaches for epigenetic age predictions.
Yang Han, Julia Franzen, Thomas Stiehl, Michael Gobs, Chao-Chung Kuo, Miloš Nikolić, Jan Hapala, Barbara Elisabeth Koop, Klaus Strathmann, Stefanie Ritz-Timme,[...]. BMC Biol 2020
22
16

BiSulfite Bolt: A bisulfite sequencing analysis platform.
Colin Farrell, Michael Thompson, Anela Tosevska, Adewale Oyetunde, Matteo Pellegrini. Gigascience 2021
8
16

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
16

Proteomics. Tissue-based map of the human proteome.
Mathias Uhlén, Linn Fagerberg, Björn M Hallström, Cecilia Lindskog, Per Oksvold, Adil Mardinoglu, Åsa Sivertsson, Caroline Kampf, Evelina Sjöstedt, Anna Asplund,[...]. Science 2015
16


Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation.
Dorothea Seiler Vellame, Isabel Castanho, Aisha Dahir, Jonathan Mill, Eilis Hannon. BMC Genomics 2021
4
25

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
16


A chromosome-scale assembly of the axolotl genome.
Jeramiah J Smith, Nataliya Timoshevskaya, Vladimir A Timoshevskiy, Melissa C Keinath, Drew Hardy, S Randal Voss. Genome Res 2019
61
16

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
16

Methylation Marks of Blood Leukocytes of Native Hucul Mares Differentiated in Age.
T Ząbek, E Semik-Gurgul, T Szmatoła, A Gurgul, A Fornal, M Bugno-Poniewierska. Int J Genomics 2019
2
50

Identifying novel constrained elements by exploiting biased substitution patterns.
Manuel Garber, Mitchell Guttman, Michele Clamp, Michael C Zody, Nir Friedman, Xiaohui Xie. Bioinformatics 2009
225
16


High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
16

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns.
Yang Zhou, Shuli Liu, Yan Hu, Lingzhao Fang, Yahui Gao, Han Xia, Steven G Schroeder, Benjamin D Rosen, Erin E Connor, Cong-Jun Li,[...]. BMC Biol 2020
17
16

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies.
Maria Needhamsen, Ewoud Ewing, Harald Lund, David Gomez-Cabrero, Robert Adam Harris, Lara Kular, Maja Jagodic. BMC Bioinformatics 2017
12
16


Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human.
Shuli Liu, Ying Yu, Shengli Zhang, John B Cole, Albert Tenesa, Ting Wang, Tara G McDaneld, Li Ma, George E Liu, Lingzhao Fang. BMC Biol 2020
15
16

Prediction of CpG Islands as an Intrinsic Clustering Property Found in Many Eukaryotic DNA Sequences and Its Relation to DNA Methylation.
Cristina Gómez-Martín, Ricardo Lebrón, José L Oliver, Michael Hackenberg. Methods Mol Biol 2018
2
50


The UCSC Genome Browser database: 2019 update.
Maximilian Haeussler, Ann S Zweig, Cath Tyner, Matthew L Speir, Kate R Rosenbloom, Brian J Raney, Christopher M Lee, Brian T Lee, Angie S Hinrichs, Jairo Navarro Gonzalez,[...]. Nucleic Acids Res 2019
427
16

The UCSC Genome Browser database: 2015 update.
Kate R Rosenbloom, Joel Armstrong, Galt P Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R Dreszer, Pauline A Fujita, Luvina Guruvadoo, Maximilian Haeussler,[...]. Nucleic Acids Res 2015
651
16

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.
Nelly Olova, Felix Krueger, Simon Andrews, David Oxley, Rebecca V Berrens, Miguel R Branco, Wolf Reik. Genome Biol 2018
105
16

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
523
16

TissueEnrich: Tissue-specific gene enrichment analysis.
Ashish Jain, Geetu Tuteja. Bioinformatics 2019
94
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.