A citation-based method for searching scientific literature

Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Camille Wagner, Anneleen Remmerie, Anna Bujko, Liesbet Martens, Tinne Thoné, Robin Browaeys, Federico F De Ponti, Bavo Vanneste, Christian Zwicker, Freya R Svedberg, Tineke Vanhalewyn, Amanda Gonçalves, Saskia Lippens, Bert Devriendt, Eric Cox, Giuliano Ferrero, Valerie Wittamer, Andy Willaert, Suzanne J F Kaptein, Johan Neyts, Kai Dallmeier, Peter Geldhof, Stijn Casaert, Bart Deplancke, Peter Ten Dijke, Anne Hoorens, Aude Vanlander, Frederik Berrevoet, Yves Van Nieuwenhove, Yvan Saeys, Wouter Saelens, Hans Van Vlierberghe, Lindsey Devisscher, Charlotte L Scott. Cell 2022
Times Cited: 28







List of co-cited articles
244 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Resolving the fibrotic niche of human liver cirrhosis at single-cell level.
P Ramachandran, R Dobie, J R Wilson-Kanamori, E F Dora, B E P Henderson, N T Luu, J R Portman, K P Matchett, M Brice, J A Marwick,[...]. Nature 2019
401
42

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.
Sonya A MacParland, Jeff C Liu, Xue-Zhong Ma, Brendan T Innes, Agata M Bartczak, Blair K Gage, Justin Manuel, Nicholas Khuu, Juan Echeverri, Ivan Linares,[...]. Nat Commun 2018
454
35

Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver.
Anneleen Remmerie, Liesbet Martens, Tinne Thoné, Angela Castoldi, Ruth Seurinck, Benjamin Pavie, Joris Roels, Bavo Vanneste, Sofie De Prijck, Mathias Vanhockerhout,[...]. Immunity 2020
88
32

Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis.
Jason S Seidman, Ty D Troutman, Mashito Sakai, Anita Gola, Nathanael J Spann, Hunter Bennett, Cassi M Bruni, Zhengyu Ouyang, Rick Z Li, Xiaoli Sun,[...]. Immunity 2020
94
32

Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner.
Diego Adhemar Jaitin, Lorenz Adlung, Christoph A Thaiss, Assaf Weiner, Baoguo Li, Hélène Descamps, Patrick Lundgren, Camille Bleriot, Zhaoyuan Liu, Aleksandra Deczkowska,[...]. Cell 2019
309
28

Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis.
Xuelian Xiong, Henry Kuang, Sahar Ansari, Tongyu Liu, Jianke Gong, Shuai Wang, Xu-Yun Zhao, Yewei Ji, Chuan Li, Liang Guo,[...]. Mol Cell 2019
224
25

Commensal-driven immune zonation of the liver promotes host defence.
Anita Gola, Michael G Dorrington, Emily Speranza, Claudia Sala, Rochelle M Shih, Andrea J Radtke, Harikesh S Wong, Antonio P Baptista, Jonathan M Hernandez, Gastone Castellani,[...]. Nature 2021
58
25

Dynamic Shifts in the Composition of Resident and Recruited Macrophages Influence Tissue Remodeling in NASH.
Sabine Daemen, Anastasiia Gainullina, Gowri Kalugotla, Li He, Mandy M Chan, Joseph W Beals, Kim H Liss, Samuel Klein, Ariel E Feldstein, Brian N Finck,[...]. Cell Rep 2021
47
21

A subset of Kupffer cells regulates metabolism through the expression of CD36.
Camille Blériot, Emelie Barreby, Garett Dunsmore, Raphaelle Ballaire, Svetoslav Chakarov, Xenia Ficht, Giorgia De Simone, Francesco Andreata, Valeria Fumagalli, Wei Guo,[...]. Immunity 2021
13
46

Single-cell spatial reconstruction reveals global division of labour in the mammalian liver.
Keren Bahar Halpern, Rom Shenhav, Orit Matcovitch-Natan, Beata Toth, Doron Lemze, Matan Golan, Efi E Massasa, Shaked Baydatch, Shanie Landen, Andreas E Moor,[...]. Nature 2017
425
21

Stellate Cells, Hepatocytes, and Endothelial Cells Imprint the Kupffer Cell Identity on Monocytes Colonizing the Liver Macrophage Niche.
Johnny Bonnardel, Wouter T'Jonck, Djoere Gaublomme, Robin Browaeys, Charlotte L Scott, Liesbet Martens, Bavo Vanneste, Sofie De Prijck, Sergei A Nedospasov, Anna Kremer,[...]. Immunity 2019
187
21

Single-cell technologies in hepatology: new insights into liver biology and disease pathogenesis.
Prakash Ramachandran, Kylie P Matchett, Ross Dobie, John R Wilson-Kanamori, Neil C Henderson. Nat Rev Gastroenterol Hepatol 2020
50
21

A human liver cell atlas reveals heterogeneity and epithelial progenitors.
Nadim Aizarani, Antonio Saviano, Sagar, Laurent Mailly, Sarah Durand, Josip S Herman, Patrick Pessaux, Thomas F Baumert, Dominic Grün. Nature 2019
353
21

Differential Ly-6C expression identifies the recruited macrophage phenotype, which orchestrates the regression of murine liver fibrosis.
Prakash Ramachandran, Antonella Pellicoro, Madeleine A Vernon, Luke Boulter, Rebecca L Aucott, Aysha Ali, Stephen N Hartland, Victoria K Snowdon, Andrea Cappon, Timothy T Gordon-Walker,[...]. Proc Natl Acad Sci U S A 2012
573
21

Liver-Derived Signals Sequentially Reprogram Myeloid Enhancers to Initiate and Maintain Kupffer Cell Identity.
Mashito Sakai, Ty D Troutman, Jason S Seidman, Zhengyu Ouyang, Nathanael J Spann, Yohei Abe, Kaori M Ego, Cassi M Bruni, Zihou Deng, Johannes C M Schlachetzki,[...]. Immunity 2019
127
17

Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis.
Oliver Krenkel, Jana Hundertmark, Ali T Abdallah, Marlene Kohlhepp, Tobias Puengel, Tilmann Roth, Diogo Philippini Pontual Branco, Jana C Mossanen, Tom Luedde, Christian Trautwein,[...]. Gut 2020
77
17

CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes.
Mirjana Efremova, Miquel Vento-Tormo, Sarah A Teichmann, Roser Vento-Tormo. Nat Protoc 2020
536
17

Onco-fetal Reprogramming of Endothelial Cells Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma.
Ankur Sharma, Justine Jia Wen Seow, Charles-Antoine Dutertre, Rhea Pai, Camille Blériot, Archita Mishra, Regina Men Men Wong, Gurmit Singh Naranjan Singh, Samydurai Sudhagar, Shabnam Khalilnezhad,[...]. Cell 2020
100
17

Bone marrow-derived monocytes give rise to self-renewing and fully differentiated Kupffer cells.
Charlotte L Scott, Fang Zheng, Patrick De Baetselier, Liesbet Martens, Yvan Saeys, Sofie De Prijck, Saskia Lippens, Chloé Abels, Steve Schoonooghe, Geert Raes,[...]. Nat Commun 2016
406
17

Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells.
Keren Bahar Halpern, Rom Shenhav, Hassan Massalha, Beata Toth, Adi Egozi, Efi E Massasa, Chiara Medgalia, Eyal David, Amir Giladi, Andreas E Moor,[...]. Nat Biotechnol 2018
142
14

Single-Cell, Single-Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity.
Tallulah S Andrews, Jawairia Atif, Jeff C Liu, Catia T Perciani, Xue-Zhong Ma, Cornelia Thoeni, Michal Slyper, Gökcen Eraslan, Asa Segerstolpe, Justin Manuel,[...]. Hepatol Commun 2022
9
44

Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis.
Ross Dobie, John R Wilson-Kanamori, Beth E P Henderson, James R Smith, Kylie P Matchett, Jordan R Portman, Karolina Wallenborg, Simone Picelli, Anna Zagorska, Swetha V Pendem,[...]. Cell Rep 2019
117
14

Establishment and Maintenance of the Macrophage Niche.
Martin Guilliams, Guilhem R Thierry, Johnny Bonnardel, Marc Bajenoff. Immunity 2020
136
14

Determinants of Resident Tissue Macrophage Identity and Function.
Camille Blériot, Svetoslav Chakarov, Florent Ginhoux. Immunity 2020
90
14

XCR1+ type 1 conventional dendritic cells drive liver pathology in non-alcoholic steatohepatitis.
Aleksandra Deczkowska, Eyal David, Pierluigi Ramadori, Dominik Pfister, Michal Safran, Baoguo Li, Amir Giladi, Diego Adhemar Jaitin, Oren Barboy, Merav Cohen,[...]. Nat Med 2021
24
16


Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma.
Qiming Zhang, Yao He, Nan Luo, Shashank J Patel, Yanjie Han, Ranran Gao, Madhura Modak, Sebastian Carotta, Christian Haslinger, David Kind,[...]. Cell 2019
367
14

Bone marrow-derived and resident liver macrophages display unique transcriptomic signatures but similar biological functions.
Lynette Beattie, Amy Sawtell, Jason Mann, Teija C M Frame, Bianca Teal, Fabian de Labastida Rivera, Najmeeyah Brown, Katherine Walwyn-Brown, John W J Moore, Sandy MacDonald,[...]. J Hepatol 2016
123
14

A Liver Capsular Network of Monocyte-Derived Macrophages Restricts Hepatic Dissemination of Intraperitoneal Bacteria by Neutrophil Recruitment.
Frederic Sierro, Maximilien Evrard, Simone Rizzetto, Michelle Melino, Andrew J Mitchell, Manuela Florido, Lynette Beattie, Shaun B Walters, Szun Szun Tay, Bo Lu,[...]. Immunity 2017
93
14

Combination of Mass Cytometry and Imaging Analysis Reveals Origin, Location, and Functional Repopulation of Liver Myeloid Cells in Mice.
Bruna Araujo David, Rafael Machado Rezende, Maísa Mota Antunes, Mônica Morais Santos, Maria Alice Freitas Lopes, Ariane Barros Diniz, Rafaela Vaz Sousa Pereira, Sarah Cozzer Marchesi, Débora Moreira Alvarenga, Brenda Naemi Nakagaki,[...]. Gastroenterology 2016
108
14

Platelet GPIbα is a mediator and potential interventional target for NASH and subsequent liver cancer.
Mohsen Malehmir, Dominik Pfister, Suchira Gallage, Marta Szydlowska, Donato Inverso, Elena Kotsiliti, Valentina Leone, Moritz Peiseler, Bas G J Surewaard, Dominik Rath,[...]. Nat Med 2019
143
14

Impaired Kupffer Cell Self-Renewal Alters the Liver Response to Lipid Overload during Non-alcoholic Steatohepatitis.
Sophie Tran, Ines Baba, Lucie Poupel, Sébastien Dussaud, Martine Moreau, Adélaïde Gélineau, Geneviève Marcelin, Elissa Magréau-Davy, Melissa Ouhachi, Philippe Lesnik,[...]. Immunity 2020
58
14

Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis.
Oliver Krenkel, Tobias Puengel, Olivier Govaere, Ali T Abdallah, Jana C Mossanen, Marlene Kohlhepp, Anke Liepelt, Eric Lefebvre, Tom Luedde, Claus Hellerbrand,[...]. Hepatology 2018
230
14

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas.
Reuben Moncada, Dalia Barkley, Florian Wagner, Marta Chiodin, Joseph C Devlin, Maayan Baron, Cristina H Hajdu, Diane M Simeone, Itai Yanai. Nat Biotechnol 2020
192
10

Single-Cell Transcriptomics Reveals Zone-Specific Alterations of Liver Sinusoidal Endothelial Cells in Cirrhosis.
Tingting Su, Yilin Yang, Sanchuan Lai, Jain Jeong, Yirang Jung, Matthew McConnell, Teruo Utsumi, Yasuko Iwakiri. Cell Mol Gastroenterol Hepatol 2021
26
11

Behavioural immune landscapes of inflammation.
Georgiana Crainiciuc, Miguel Palomino-Segura, Miguel Molina-Moreno, Jon Sicilia, David G Aragones, Jackson Liang Yao Li, Rodrigo Madurga, José M Adrover, Alejandra Aroca-Crevillén, Sandra Martin-Salamanca,[...]. Nature 2022
11
27

SCENIC: single-cell regulatory network inference and clustering.
Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts,[...]. Nat Methods 2017
998
10

Trem-2 Promotes Emergence of Restorative Macrophages and Endothelial Cells During Recovery From Hepatic Tissue Damage.
Inês Coelho, Nádia Duarte, André Barros, Maria Paula Macedo, Carlos Penha-Gonçalves. Front Immunol 2021
15
20

Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer.
Yonatan Katzenelenbogen, Fadi Sheban, Adam Yalin, Ido Yofe, Dmitry Svetlichnyy, Diego Adhemar Jaitin, Chamutal Bornstein, Adi Moshe, Hadas Keren-Shaul, Merav Cohen,[...]. Cell 2020
113
10

Non-parenchymal TREM-2 protects the liver from immune-mediated hepatocellular damage.
Maria J Perugorria, Aitor Esparza-Baquer, Fiona Oakley, Ibone Labiano, Ana Korosec, Alexander Jais, Jelena Mann, Dina Tiniakos, Alvaro Santos-Laso, Ander Arbelaiz,[...]. Gut 2019
50
10

Immunology in the liver--from homeostasis to disease.
Felix Heymann, Frank Tacke. Nat Rev Gastroenterol Hepatol 2016
491
10

Macrophage heterogeneity in liver injury and fibrosis.
Frank Tacke, Henning W Zimmermann. J Hepatol 2014
521
10

Visualizing the function and fate of neutrophils in sterile injury and repair.
Jing Wang, Mokarram Hossain, Ajitha Thanabalasuriar, Matthias Gunzer, Cynthia Meininger, Paul Kubes. Science 2017
232
10

Macrophage-derived Wnt opposes Notch signaling to specify hepatic progenitor cell fate in chronic liver disease.
Luke Boulter, Olivier Govaere, Tom G Bird, Sorina Radulescu, Prakash Ramachandran, Antonella Pellicoro, Rachel A Ridgway, Sang Soo Seo, Bart Spee, Nico Van Rooijen,[...]. Nat Med 2012
518
10

Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front.
Christian M Schürch, Salil S Bhate, Graham L Barlow, Darci J Phillips, Luca Noti, Inti Zlobec, Pauline Chu, Sarah Black, Janos Demeter, David R McIlwain,[...]. Cell 2020
122
10

Senescence surveillance of pre-malignant hepatocytes limits liver cancer development.
Tae-Won Kang, Tetyana Yevsa, Norman Woller, Lisa Hoenicke, Torsten Wuestefeld, Daniel Dauch, Anja Hohmeyer, Marcus Gereke, Ramona Rudalska, Anna Potapova,[...]. Nature 2011
850
10

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
846
10

Liver Fibrosis, but No Other Histologic Features, Is Associated With Long-term Outcomes of Patients With Nonalcoholic Fatty Liver Disease.
Paul Angulo, David E Kleiner, Sanne Dam-Larsen, Leon A Adams, Einar S Bjornsson, Phunchai Charatcharoenwitthaya, Peter R Mills, Jill C Keach, Heather D Lafferty, Alisha Stahler,[...]. Gastroenterology 2015
10

Kupffer cell receptor CLEC4F is important for the destruction of desialylated platelets in mice.
Yizhi Jiang, Yaqiong Tang, Christopher Hoover, Yuji Kondo, Dongping Huang, Damien Restagno, Bojing Shao, Liang Gao, J Michael McDaniel, Meixiang Zhou,[...]. Cell Death Differ 2021
17
17

Programmed Death Ligand 1 Is Overexpressed in Liver Macrophages in Chronic Liver Diseases, and Its Blockade Improves the Antibacterial Activity Against Infections.
Elisa Pose, Mar Coll, Celia Martínez-Sánchez, Zhutian Zeng, Bas G J Surewaard, Cristina Català, María Velasco-de Andrés, Juan José Lozano, Sílvia Ariño, David Fuster,[...]. Hepatology 2021
8
37


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.