A citation-based method for searching scientific literature

Barbara J Klanderman, Christopher Koch, Kalotina Machini, Shruti S Parpattedar, Shruthi Bandyadka, Chiao-Feng Lin, Elizabeth Hynes, Matthew S Lebo, Sami S Amr. J Mol Diagn 2022
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A systematic comparison of pharmacogene star allele calling bioinformatics algorithms: a focus on CYP2D6 genotyping.
David Twesigomwe, Galen E B Wright, Britt I Drögemöller, Jorge da Rocha, Zané Lombard, Scott Hazelhurst. NPJ Genom Med 2020
22
100

Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data.
Ibrahim Numanagić, Salem Malikić, Victoria M Pratt, Todd C Skaar, David A Flockhart, S Cenk Sahinalp. Bioinformatics 2015
26
50

Pharmacogene Variation Consortium: A Global Resource and Repository for Pharmacogene Variation.
Andrea Gaedigk, Scott T Casey, Michelle Whirl-Carrillo, Neil A Miller, Teri E Klein. Clin Pharmacol Ther 2021
17
50

Clinical Pharmacogenetics Implementation Consortium Guideline for CYP2D6, OPRM1, and COMT Genotypes and Select Opioid Therapy.
Kristine R Crews, Andrew A Monte, Rachel Huddart, Kelly E Caudle, Evan D Kharasch, Andrea Gaedigk, Henry M Dunnenberger, J Steven Leeder, John T Callaghan, Caroline Flora Samer,[...]. Clin Pharmacol Ther 2021
84
50

Clinical Pharmacogenetics Implementation Consortium Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2018 Update.
Mary V Relling, Matthias Schwab, Michelle Whirl-Carrillo, Guilherme Suarez-Kurtz, Ching-Hon Pui, Charles M Stein, Ann M Moyer, William E Evans, Teri E Klein, Federico Guillermo Antillon-Klussmann,[...]. Clin Pharmacol Ther 2019
266
50

Targeted Genotyping in Clinical Pharmacogenomics: What Is Missing?
Jaime L Lopes, Kimberley Harris, Mary Beth Karow, Sandra E Peterson, Michelle L Kluge, Katrina E Kotzer, Guilherme S Lopes, Nicholas B Larson, Suzette J Bielinski, Steven E Scherer,[...]. J Mol Diagn 2022
5
50

Differential quantification of CYP2D6 gene copy number by four different quantitative real-time PCR assays.
Anuradha Ramamoorthy, David A Flockhart, Naoya Hosono, Michiaki Kubo, Yusuke Nakamura, Todd C Skaar. Pharmacogenet Genomics 2010
29
50

Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Dihydropyrimidine Dehydrogenase Genotype and Fluoropyrimidine Dosing: 2017 Update.
Ursula Amstutz, Linda M Henricks, Steven M Offer, Julia Barbarino, Jan H M Schellens, Jesse J Swen, Teri E Klein, Howard L McLeod, Kelly E Caudle, Robert B Diasio,[...]. Clin Pharmacol Ther 2018
249
50

Pharmacogenomic potential in advanced cancer patients.
Dan Nichols, Susanne Arnold, Heidi L Weiss, Jianrong Wu, Eric B Durbin, Rachel Miller, Jill Kolesar. Am J Health Syst Pharm 2019
5
50

Pharmacogenomic findings from clinical whole exome sequencing of diagnostic odyssey patients.
Margot A Cousin, Eric T Matey, Patrick R Blackburn, Nicole J Boczek, Tammy M McAllister, Teresa M Kruisselbrink, Dusica Babovic-Vuksanovic, Konstantinos N Lazaridis, Eric W Klee. Mol Genet Genomic Med 2017
16
50

Stargazer: a software tool for calling star alleles from next-generation sequencing data using CYP2D6 as a model.
Seung-Been Lee, Marsha M Wheeler, Karynne Patterson, Sean McGee, Rachel Dalton, Erica L Woodahl, Andrea Gaedigk, Kenneth E Thummel, Deborah A Nickerson. Genet Med 2019
49
50

Real-world data from a molecular tumor board demonstrates improved outcomes with a precision N-of-One strategy.
Shumei Kato, Ki Hwan Kim, Hyo Jeong Lim, Amelie Boichard, Mina Nikanjam, Elizabeth Weihe, Dennis J Kuo, Ramez N Eskander, Aaron Goodman, Natalie Galanina,[...]. Nat Commun 2020
92
50

Clinical Opportunities for Germline Pharmacogenetics and Management of Drug-Drug Interactions in Patients With Advanced Solid Cancers.
Tyler Shugg, Reynold C Ly, Elizabeth J Rowe, Santosh Philips, Mustafa A Hyder, Milan Radovich, Marc B Rosenman, Victoria M Pratt, John T Callaghan, Zeruesenay Desta,[...]. JCO Precis Oncol 2022
1
100

Cyrius: accurate CYP2D6 genotyping using whole-genome sequencing data.
Xiao Chen, Fei Shen, Nina Gonzaludo, Alka Malhotra, Cande Rogert, Ryan J Taft, David R Bentley, Michael A Eberle. Pharmacogenomics J 2021
22
50

Constellation: a tool for rapid, automated phenotype assignment of a highly polymorphic pharmacogene, CYP2D6, from whole-genome sequences.
Greyson P Twist, Andrea Gaedigk, Neil A Miller, Emily G Farrow, Laurel K Willig, Darrell L Dinwiddie, Josh E Petrikin, Sarah E Soden, Suzanne Herd, Margaret Gibson,[...]. NPJ Genom Med 2016
65
50

CYP2D6, SULT1A1 and UGT2B17 copy number variation: quantitative detection by multiplex PCR.
Andrea Gaedigk, Greyson P Twist, J Steven Leeder. Pharmacogenomics 2012
58
50

Clinical pharmacogenomic testing and reporting: A technical standard of the American College of Medical Genetics and Genomics (ACMG).
Marwan K Tayeh, Andrea Gaedigk, Matthew P Goetz, Teri E Klein, Elaine Lyon, Gwendolyn A McMillin, Stefan Rentas, Marwan Shinawi, Victoria M Pratt, Stuart A Scott. Genet Med 2022
5
50

Personalized genomic analyses for cancer mutation discovery and interpretation.
Siân Jones, Valsamo Anagnostou, Karli Lytle, Sonya Parpart-Li, Monica Nesselbush, David R Riley, Manish Shukla, Bryan Chesnick, Maura Kadan, Eniko Papp,[...]. Sci Transl Med 2015
260
50

Repurposing of Diagnostic Whole Exome Sequencing Data of 1,583 Individuals for Clinical Pharmacogenetics.
Maaike van der Lee, William G Allard, Sander Bollen, Gijs W E Santen, Claudia A L Ruivenkamp, Mariëtte J V Hoffer, Marjolein Kriek, Henk-Jan Guchelaar, Seyed Y Anvar, Jesse J Swen. Clin Pharmacol Ther 2020
13
50

Analytic validation and clinical utilization of the comprehensive genomic profiling test, GEM ExTra®.
Tracey White, Szabolcs Szelinger, Janine LoBello, Amy King, Jessica Aldrich, Nathan Garinger, Matthew Halbert, Ryan F Richholt, Stephen D Mastrian, Cody Babb,[...]. Oncotarget 2021
6
50

CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis: A GeT-RM Collaborative Project.
Andrea Gaedigk, Erin C Boone, Steven E Scherer, Seung-Been Lee, Ibrahim Numanagić, Cenk Sahinalp, Joshua D Smith, Sean McGee, Aparna Radhakrishnan, Xiang Qin,[...]. J Mol Diagn 2022
3
50



Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG).
Catherine Rehder, Lora J H Bean, David Bick, Elizabeth Chao, Wendy Chung, Soma Das, Julianne O'Daniel, Heidi Rehm, Vandana Shashi, Lisa M Vincent. Genet Med 2021
23
50

Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants.
Aziz Belkadi, Alexandre Bolze, Yuval Itan, Aurélie Cobat, Quentin B Vincent, Alexander Antipenko, Lei Shang, Bertrand Boisson, Jean-Laurent Casanova, Laurent Abel. Proc Natl Acad Sci U S A 2015
318
50

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes.
Ibrahim Numanagić, Salem Malikić, Michael Ford, Xiang Qin, Lorraine Toji, Milan Radovich, Todd C Skaar, Victoria M Pratt, Bonnie Berger, Steve Scherer,[...]. Nat Commun 2018
42
50

StellarPGx: A Nextflow Pipeline for Calling Star Alleles in Cytochrome P450 Genes.
David Twesigomwe, Britt I Drögemöller, Galen E B Wright, Azra Siddiqui, Jorge da Rocha, Zané Lombard, Scott Hazelhurst. Clin Pharmacol Ther 2021
8
50

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50

Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2D6 and CYP2C19 Genotypes and Dosing of Selective Serotonin Reuptake Inhibitors.
J K Hicks, J R Bishop, K Sangkuhl, D J Müller, Y Ji, S G Leckband, J S Leeder, R L Graham, D L Chiulli, A LLerena,[...]. Clin Pharmacol Ther 2015
516
50

Real-World Evaluation of Universal Germline Screening for Cancer Treatment-Relevant Pharmacogenes.
Megan L Hutchcraft, Nan Lin, Shulin Zhang, Catherine Sears, Kyle Zacholski, Elizabeth A Belcher, Eric B Durbin, John L Villano, Michael J Cavnar, Susanne M Arnold,[...]. Cancers (Basel) 2021
2
50


The Personal Genome Project Canada: findings from whole genome sequences of the inaugural 56 participants.
Miriam S Reuter, Susan Walker, Bhooma Thiruvahindrapuram, Joe Whitney, Iris Cohn, Neal Sondheimer, Ryan K C Yuen, Brett Trost, Tara A Paton, Sergio L Pereira,[...]. CMAJ 2018
36
50


Case for genome sequencing in infants and children with rare, undiagnosed or genetic diseases.
David Bick, Marilyn Jones, Stacie L Taylor, Ryan J Taft, John Belmont. J Med Genet 2019
50
50

Calling Star Alleles With Stargazer in 28 Pharmacogenes With Whole Genome Sequences.
Seung-Been Lee, Marsha M Wheeler, Kenneth E Thummel, Deborah A Nickerson. Clin Pharmacol Ther 2019
35
50

Genetic Testing among Children in a Complex Care Program.
Krista Oei, Robin Z Hayeems, Wendy J Ungar, Ronald D Cohn, Eyal Cohen. Children (Basel) 2017
10
50

Prescribing Prevalence of Medications With Potential Genotype-Guided Dosing in Pediatric Patients.
Laura B Ramsey, Henry H Ong, Jonathan S Schildcrout, Yaping Shi, Leigh Anne Tang, J Kevin Hicks, Nihal El Rouby, Larisa H Cavallari, Sony Tuteja, Christina L Aquilante,[...]. JAMA Netw Open 2020
17
50

Improved diagnostic yield compared with targeted gene sequencing panels suggests a role for whole-genome sequencing as a first-tier genetic test.
Anath C Lionel, Gregory Costain, Nasim Monfared, Susan Walker, Miriam S Reuter, S Mohsen Hosseini, Bhooma Thiruvahindrapuram, Daniele Merico, Rebekah Jobling, Thomas Nalpathamkalam,[...]. Genet Med 2018
252
50

Research priorities for children with neurological impairment and medical complexity in high-income countries.
Catherine Diskin, Kristina Malik, Peter J Gill, Nada Rashid, Carol Y Chan, Katherine E Nelson, Joanna Thomson, Jay Berry, Rishi Agrawal, Julia Orkin,[...]. Dev Med Child Neurol 2022
4
50

Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2C19 and Proton Pump Inhibitor Dosing.
John J Lima, Cameron D Thomas, Julia Barbarino, Zeruesenay Desta, Sara L Van Driest, Nihal El Rouby, Julie A Johnson, Larisa H Cavallari, Valentina Shakhnovich, David L Thacker,[...]. Clin Pharmacol Ther 2021
68
50

Assessment of the Implementation of Pharmacogenomic Testing in a Pediatric Tertiary Care Setting.
Iris Cohn, Roozbeh Manshaei, Eriskay Liston, John B A Okello, Reem Khan, Meredith R Curtis, Abby J Krupski, Rebekah K Jobling, Kelsey Kalbfleisch, Tara A Paton,[...]. JAMA Netw Open 2021
7
50

Pharmacogenomics.
Dan M Roden, Howard L McLeod, Mary V Relling, Marc S Williams, George A Mensah, Josh F Peterson, Sara L Van Driest. Lancet 2019
156
50

Patterns and costs of health care use of children with medical complexity.
Eyal Cohen, Jay G Berry, Ximena Camacho, Geoff Anderson, Walter Wodchis, Astrid Guttmann. Pediatrics 2012
373
50

An Evidence-Based Framework for Evaluating Pharmacogenomics Knowledge for Personalized Medicine.
Michelle Whirl-Carrillo, Rachel Huddart, Li Gong, Katrin Sangkuhl, Caroline F Thorn, Ryan Whaley, Teri E Klein. Clin Pharmacol Ther 2021
88
50

Timing of Co-occurring Chronic Conditions in Children With Neurologic Impairment.
Joanna Thomson, Matt Hall, Katherine Nelson, Juan Carlos Flores, Brigid Garrity, Danielle D DeCourcey, Rishi Agrawal, Denise M Goodman, James A Feinstein, Ryan J Coller,[...]. Pediatrics 2021
9
50

Exome and genome sequencing for pediatric patients with congenital anomalies or intellectual disability: an evidence-based clinical guideline of the American College of Medical Genetics and Genomics (ACMG).
Kandamurugu Manickam, Monica R McClain, Laurie A Demmer, Sawona Biswas, Hutton M Kearney, Jennifer Malinowski, Lauren J Massingham, Danny Miller, Timothy W Yu, Fuki M Hisama. Genet Med 2021
74
50

Opportunities and challenges for the computational interpretation of rare variation in clinically important genes.
Gregory McInnes, Andrew G Sharo, Megan L Koleske, Julia E H Brown, Matthew Norstad, Aashish N Adhikari, Sheng Wang, Steven E Brenner, Jodi Halpern, Barbara A Koenig,[...]. Am J Hum Genet 2021
13
50

Children with medical complexity: a scoping review of interventions to support caregiver stress.
H Edelstein, J Schippke, S Sheffe, S Kingsnorth. Child Care Health Dev 2017
67
50

Whole-genome sequencing as an investigational device for return of hereditary disease risk and pharmacogenomic results as part of the All of Us Research Program.
Eric Venner, Donna Muzny, Joshua D Smith, Kimberly Walker, Cynthia L Neben, Christina M Lockwood, Phillip E Empey, Ginger A Metcalf, Chris Kachulis, Sana Mian,[...]. Genome Med 2022
3
50

Children with medical complexity in Canada.
Tammie Dewan, Eyal Cohen. Paediatr Child Health 2013
61
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.