A citation-based method for searching scientific literature

Radhakrishnan Kanagaraj, Richard Mitter, Theodoros Kantidakis, Matthew M Edwards, Anaid Benitez, Probir Chakravarty, Beiyuan Fu, Olivier Becherel, Fengtang Yang, Martin F Lavin, Amnon Koren, Aengus Stewart, Stephen C West. Proc Natl Acad Sci U S A 2022
Times Cited: 4







List of co-cited articles
8 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
169
50

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
89
50

RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability.
Lamia Wahba, Jeremy D Amon, Douglas Koshland, Milena Vuica-Ross. Mol Cell 2011
267
50

Harmful R-loops are prevented via different cell cycle-specific mechanisms.
Marta San Martin-Alonso, María E Soler-Oliva, María García-Rubio, Tatiana García-Muse, Andrés Aguilera. Nat Commun 2021
7
50

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
161
50

Best practices for the visualization, mapping, and manipulation of R-loops.
Frédéric Chédin, Stella R Hartono, Lionel A Sanz, Vincent Vanoosthuyse. EMBO J 2021
28
50

ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB.
Yaqun Teng, Tribhuwan Yadav, Meihan Duan, Jun Tan, Yufei Xiang, Boya Gao, Jianquan Xu, Zhuobin Liang, Yang Liu, Satoshi Nakajima,[...]. Nat Commun 2018
78
50


R-Loops in Motor Neuron Diseases.
Martina G L Perego, Michela Taiana, Nereo Bresolin, Giacomo P Comi, Stefania Corti. Mol Neurobiol 2019
25
25

Combined inhibition of Aurora-A and ATR kinase results in regression of MYCN-amplified neuroblastoma.
Isabelle Roeschert, Evon Poon, Anton G Henssen, Heathcliff Dorado Garcia, Marco Gatti, Celeste Giansanti, Yann Jamin, Carsten P Ade, Peter Gallant, Christina Schülein-Völk,[...]. Nat Cancer 2021
17
25

Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.
Quan Zhu, Nien Hoong, Aaron Aslanian, Toshiro Hara, Christopher Benner, Sven Heinz, Karen H Miga, Eugene Ke, Sachin Verma, Jan Soroczynski,[...]. Mol Cell 2018
63
25

RNases H: Structure and mechanism.
Malwina Hyjek, Małgorzata Figiel, Marcin Nowotny. DNA Repair (Amst) 2019
57
25

Inducible SMARCAL1 knockdown in iPSC reveals a link between replication stress and altered expression of master differentiation genes.
Giusj Monia Pugliese, Federico Salaris, Valentina Palermo, Veronica Marabitti, Nicolò Morina, Alessandro Rosa, Annapaola Franchitto, Pietro Pichierri. Dis Model Mech 2019
7
25

ZPR1 prevents R-loop accumulation, upregulates SMN2 expression and rescues spinal muscular atrophy.
Annapoorna Kannan, Xiaoting Jiang, Lan He, Saif Ahmad, Laxman Gangwani. Brain 2020
25
25

Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops.
Nagaraja Chappidi, Zuzana Nascakova, Barbora Boleslavska, Ralph Zellweger, Esin Isik, Martin Andrs, Shruti Menon, Jana Dobrovolna, Chiara Balbo Pogliano, Joao Matos,[...]. Mol Cell 2020
58
25

Proximity labeling identifies a repertoire of site-specific R-loop modulators.
Qingqing Yan, Phillip Wulfridge, John Doherty, Jose L Fernandez-Luna, Pedro J Real, Hsin-Yao Tang, Kavitha Sarma. Nat Commun 2022
11
25

Mrc1 and Rad9 cooperate to regulate initiation and elongation of DNA replication in response to DNA damage.
Julien Bacal, María Moriel-Carretero, Benjamin Pardo, Antoine Barthe, Sushma Sharma, Andrei Chabes, Armelle Lengronne, Philippe Pasero. EMBO J 2018
35
25

RNase H1 directs origin-specific initiation of DNA replication in human mitochondria.
Viktor Posse, Ali Al-Behadili, Jay P Uhler, Anders R Clausen, Aurelio Reyes, Massimo Zeviani, Maria Falkenberg, Claes M Gustafsson. PLoS Genet 2019
42
25


Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
158
25

Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells.
Chiara Conti, Barbara Saccà, John Herrick, Claude Lalou, Yves Pommier, Aaron Bensimon. Mol Biol Cell 2007
155
25

DDX41 regulates the expression and alternative splicing of genes involved in tumorigenesis and immune response.
Kai Qin, Danni Jian, Yaqiang Xue, Yi Cheng, Peng Zhang, Yaxun Wei, Jing Zhang, Huihua Xiong, Yi Zhang, Xianglin Yuan. Oncol Rep 2021
8
25

RAD51-dependent recruitment of TERRA lncRNA to telomeres through R-loops.
Marianna Feretzaki, Michaela Pospisilova, Rita Valador Fernandes, Thomas Lunardi, Lumir Krejci, Joachim Lingner. Nature 2020
64
25

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
218
25

Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1.
Hai Dang Nguyen, Tribhuwan Yadav, Sumanprava Giri, Borja Saez, Timothy A Graubert, Lee Zou. Mol Cell 2017
138
25

The role of chromatin at transcription-replication conflicts as a genome safeguard.
Aleix Bayona-Feliu, Andrés Aguilera. Biochem Soc Trans 2021
2
50

Resolution of R-loops by INO80 promotes DNA replication and maintains cancer cell proliferation and viability.
Lisa Prendergast, Urszula L McClurg, Rossitsa Hristova, Rolando Berlinguer-Palmini, Sarah Greener, Katie Veitch, Inmaculada Hernandez, Philippe Pasero, Daniel Rico, Jonathan M G Higgins,[...]. Nat Commun 2020
23
25

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress.
Jérôme Poli, Christian-Benedikt Gerhold, Alessandro Tosi, Nicole Hustedt, Andrew Seeber, Ragna Sack, Franz Herzog, Philippe Pasero, Kenji Shimada, Karl-Peter Hopfner,[...]. Genes Dev 2016
72
25

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
81
25

A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting.
Katjana Tantale, Florian Mueller, Alja Kozulic-Pirher, Annick Lesne, Jean-Marc Victor, Marie-Cécile Robert, Serena Capozi, Racha Chouaib, Volker Bäcker, Julio Mateos-Langerak,[...]. Nat Commun 2016
144
25

Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome.
Dilek Colak, Nikica Zaninovic, Michael S Cohen, Zev Rosenwaks, Wang-Yong Yang, Jeannine Gerhardt, Matthew D Disney, Samie R Jaffrey. Science 2014
197
25

RNA polymerase III is required for the repair of DNA double-strand breaks by homologous recombination.
Sijie Liu, Yu Hua, Jingna Wang, Lingyan Li, Junjie Yuan, Bo Zhang, Ziyang Wang, Jianguo Ji, Daochun Kong. Cell 2021
46
25

The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress.
Michael Bauer, Zuzana Nascakova, Anca-Irina Mihai, Phil F Cheng, Mitchell P Levesque, Simon Lampart, Robert Hurwitz, Lennart Pfannkuch, Jana Dobrovolna, Melanie Jacobs,[...]. Nat Commun 2020
21
25

ATAD5 restricts R-loop formation through PCNA unloading and RNA helicase maintenance at the replication fork.
Sangin Kim, Nalae Kang, Su Hyung Park, James Wells, Taejoo Hwang, Eunjin Ryu, Byung-Gyu Kim, Sunyoung Hwang, Seong-Jung Kim, Sukhyun Kang,[...]. Nucleic Acids Res 2020
25
25

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
287
25

R-Loops and Its Chro-Mates: The Strange Case of Dr. Jekyll and Mr. Hyde.
Sidrit Uruci, Calvin Shun Yu Lo, David Wheeler, Nitika Taneja. Int J Mol Sci 2021
1
100

Emerging roles of centromeric RNAs in centromere formation and function.
Qian Liu, Yang Liu, Qinghua Shi, Handong Su, Chunhui Wang, James A Birchler, Fangpu Han. Genes Genomics 2021
7
25

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
31
25

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
365
25

Senataxin plays an essential role with DNA damage response proteins in meiotic recombination and gene silencing.
Olivier J Becherel, Abrey J Yeo, Alissa Stellati, Evelyn Y H Heng, John Luff, Amila M Suraweera, Rick Woods, Jean Fleming, Dianne Carrie, Kristine McKinney,[...]. PLoS Genet 2013
107
25

Mitotic progression following DNA damage enables pattern recognition within micronuclei.
Shane M Harding, Joseph L Benci, Jerome Irianto, Dennis E Discher, Andy J Minn, Roger A Greenberg. Nature 2017
684
25

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
239
25

Ribonuclease H2 mutations induce a cGAS/STING-dependent innate immune response.
Karen J Mackenzie, Paula Carroll, Laura Lettice, Žygimantė Tarnauskaitė, Kaalak Reddy, Flora Dix, Ailsa Revuelta, Erika Abbondati, Rachel E Rigby, Björn Rabe,[...]. EMBO J 2016
145
25

UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide.
Carmen Pérez-Calero, Aleix Bayona-Feliu, Xiaoyu Xue, Sonia I Barroso, Sergio Muñoz, Víctor M González-Basallote, Patrick Sung, Andrés Aguilera. Genes Dev 2020
42
25

FANCM suppresses DNA replication stress at ALT telomeres by disrupting TERRA R-loops.
Xiaolei Pan, Yun Chen, Beena Biju, Naveed Ahmed, Joyce Kong, Marti Goldenberg, Judy Huang, Nandakumar Mohan, Stephanie Klosek, Kian Parsa,[...]. Sci Rep 2019
39
25

Post-translational regulation of antiviral innate signaling.
Yilong Zhou, Chenxi He, Lin Wang, Baoxue Ge. Eur J Immunol 2017
68
25

Specificity of end resection pathways for double-strand break regions containing ribonucleotides and base lesions.
James M Daley, Nozomi Tomimatsu, Grace Hooks, Weibin Wang, Adam S Miller, Xiaoyu Xue, Kevin A Nguyen, Hardeep Kaur, Elizabeth Williamson, Bipasha Mukherjee,[...]. Nat Commun 2020
12
25

BRCA1 and RNAi factors promote repair mediated by small RNAs and PALB2-RAD52.
Elodie Hatchi, Liana Goehring, Serena Landini, Konstantina Skourti-Stathaki, Derrick K DeConti, Fieda O Abderazzaq, Priyankana Banerjee, Timothy M Demers, Yaoyu E Wang, John Quackenbush,[...]. Nature 2021
17
25

Replisome bypass of a protein-based R-loop block by Pif1.
Grant D Schauer, Lisanne M Spenkelink, Jacob S Lewis, Olga Yurieva, Stefan H Mueller, Antoine M van Oijen, Michael E O'Donnell. Proc Natl Acad Sci U S A 2020
19
25

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
389
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.