A citation-based method for searching scientific literature

Todd M Greco, Christopher Secker, Eduardo Silva Ramos, Joel D Federspiel, Jeh-Ping Liu, Alma M Perez, Ismael Al-Ramahi, Jeffrey P Cantle, Jeffrey B Carroll, Juan Botas, Scott O Zeitlin, Erich E Wanker, Ileana M Cristea. Cell Syst 2022
Times Cited: 3







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Huntingtin interacting proteins are genetic modifiers of neurodegeneration.
Linda S Kaltenbach, Eliana Romero, Robert R Becklin, Rakesh Chettier, Russell Bell, Amit Phansalkar, Andrew Strand, Cameron Torcassi, Justin Savage, Anthony Hurlburt,[...]. PLoS Genet 2007
292
66

Network organization of the huntingtin proteomic interactome in mammalian brain.
Dyna I Shirasaki, Erin R Greiner, Ismael Al-Ramahi, Michelle Gray, Pinmanee Boontheung, Daniel H Geschwind, Juan Botas, Giovanni Coppola, Steve Horvath, Joseph A Loo,[...]. Neuron 2012
188
66

Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice.
Peter Langfelder, Jeffrey P Cantle, Doxa Chatzopoulou, Nan Wang, Fuying Gao, Ismael Al-Ramahi, Xiao-Hong Lu, Eliana Marisa Ramos, Karla El-Zein, Yining Zhao,[...]. Nat Neurosci 2016
203
66



The Biology of Huntingtin.
Frédéric Saudou, Sandrine Humbert. Neuron 2016
418
66

Huntingtin protein interactions altered by polyglutamine expansion as determined by quantitative proteomic analysis.
Tamara Ratovitski, Ekaterine Chighladze, Nicolas Arbez, Tatiana Boronina, Shelley Herbrich, Robert N Cole, Christopher A Ross. Cell Cycle 2012
77
66

ATXN1-CIC Complex Is the Primary Driver of Cerebellar Pathology in Spinocerebellar Ataxia Type 1 through a Gain-of-Function Mechanism.
Maxime W C Rousseaux, Tyler Tschumperlin, Hsiang-Chih Lu, Elizabeth P Lackey, Vitaliy V Bondar, Ying-Wooi Wan, Qiumin Tan, Carolyn J Adamski, Jillian Friedrich, Kirk Twaroski,[...]. Neuron 2018
47
33

Proteomic analysis of wild-type and mutant huntingtin-associated proteins in mouse brains identifies unique interactions and involvement in protein synthesis.
Brady P Culver, Jeffrey N Savas, Sung K Park, Jeong H Choi, Shuqiu Zheng, Scott O Zeitlin, John R Yates, Naoko Tanese. J Biol Chem 2012
85
33

Uninterrupted CAG repeat drives striatum-selective transcriptionopathy and nuclear pathogenesis in human Huntingtin BAC mice.
Xiaofeng Gu, Jeffrey Richman, Peter Langfelder, Nan Wang, Shasha Zhang, Monica Bañez-Coronel, Huei-Bin Wang, Lucia Yang, Lalini Ramanathan, Linna Deng,[...]. Neuron 2022
2
50

Molecular insights into cortico-striatal miscommunications in Huntington's disease.
Matthew B Veldman, X William Yang. Curr Opin Neurobiol 2018
22
33

Ubiquilin-2 differentially regulates polyglutamine disease proteins.
Julia E Gerson, Nathaniel Safren, Svetlana Fischer, Ronak Patel, Emily V Crowley, Jacqueline P Welday, Alexandra K Windle, Sami Barmada, Henry L Paulson, Lisa M Sharkey. Hum Mol Genet 2020
8
33

The Gln-Ala repeat transcriptional activator CA150 interacts with huntingtin: neuropathologic and genetic evidence for a role in Huntington's disease pathogenesis.
S Holbert, I Denghien, T Kiechle, A Rosenblatt, C Wellington, M R Hayden, R L Margolis, C A Ross, J Dausset, R J Ferrante,[...]. Proc Natl Acad Sci U S A 2001
132
33

A subcellular map of the human proteome.
Peter J Thul, Lovisa Åkesson, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal, Tove Alm, Anna Asplund, Lars Björk, Lisa M Breckels,[...]. Science 2017
33

The role of synaptic biomarkers in the spectrum of neurodegenerative diseases.
Sonia Mazzucchi, Giovanni Palermo, Nicole Campese, Alessandro Galgani, Alessandra Della Vecchia, Andrea Vergallo, Gabriele Siciliano, Roberto Ceravolo, Harald Hampel, Filippo Baldacci. Expert Rev Proteomics 2020
9
33


PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.
Huaiyu Mi, Dustin Ebert, Anushya Muruganujan, Caitlin Mills, Laurent-Philippe Albou, Tremayne Mushayamaha, Paul D Thomas. Nucleic Acids Res 2021
348
33

Protein-protein interactions in human disease.
Daniel P Ryan, Jacqueline M Matthews. Curr Opin Struct Biol 2005
197
33

The functional interactome landscape of the human histone deacetylase family.
Preeti Joshi, Todd M Greco, Amanda J Guise, Yang Luo, Fang Yu, Alexey I Nesvizhskii, Ileana M Cristea. Mol Syst Biol 2013
200
33

Glyceraldehyde 3-phosphate dehydrogenase augments the intercellular transmission and toxicity of polyglutamine aggregates in a cell model of Huntington disease.
Elena R Mikhaylova, Vladimir F Lazarev, Alina D Nikotina, Boris A Margulis, Irina V Guzhova. J Neurochem 2016
10
33

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions.
Alan J Tackett, Jeffrey A DeGrasse, Matthew D Sekedat, Marlene Oeffinger, Michael P Rout, Brian T Chait. J Proteome Res 2005
110
33

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
33

mPPI: a database extension to visualize structural interactome in a one-to-many manner.
Yekai Zhou, Hongjun Chen, Sida Li, Ming Chen. Database (Oxford) 2021
1
100

The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Yasset Perez-Riverol, Jingwen Bai, Chakradhar Bandla, David García-Seisdedos, Suresh Hewapathirana, Selvakumar Kamatchinathan, Deepti J Kundu, Ananth Prakash, Anika Frericks-Zipper, Martin Eisenacher,[...]. Nucleic Acids Res 2022
303
33

HDinHD: A Rich Data Portal for Huntington's Disease Research.
Jeff Aaronson, Vahri Beaumont, Richard A Blevins, Viktoria Andreeva, Irina Murasheva, Anastasia Shneyderman, Kabenla Armah, Rob Gill, Jian Chen, Jim Rosinski,[...]. J Huntingtons Dis 2021
3
33

Role of cerebral cortex in the neuropathology of Huntington's disease.
Ana M Estrada-Sánchez, George V Rebec. Front Neural Circuits 2013
54
33

A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease.
Heike Goehler, Maciej Lalowski, Ulrich Stelzl, Stephanie Waelter, Martin Stroedicke, Uwe Worm, Anja Droege, Katrin S Lindenberg, Maria Knoblich, Christian Haenig,[...]. Mol Cell 2004
318
33

Mutant huntingtin impairs PNKP and ATXN3, disrupting DNA repair and transcription.
Rui Gao, Anirban Chakraborty, Charlene Geater, Subrata Pradhan, Kara L Gordon, Jeffrey Snowden, Subo Yuan, Audrey S Dickey, Sanjeev Choudhary, Tetsuo Ashizawa,[...]. Elife 2019
51
33

Huntingtin structure is orchestrated by HAP40 and shows a polyglutamine expansion-specific interaction with exon 1.
Rachel J Harding, Justin C Deme, Johannes F Hevler, Sem Tamara, Alexander Lemak, Jeffrey P Cantle, Magdalena M Szewczyk, Nola Begeja, Siobhan Goss, Xiaobing Zuo,[...]. Commun Biol 2021
5
33

The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1.
A C Goldstrohm, T R Albrecht, C Suñé, M T Bedford, M A Garcia-Blanco. Mol Cell Biol 2001
101
33

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.
Nils A Kulak, Garwin Pichler, Igor Paron, Nagarjuna Nagaraj, Matthias Mann. Nat Methods 2014
929
33

Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq.
Ozgun Gokce, Geoffrey M Stanley, Barbara Treutlein, Norma F Neff, J Gray Camp, Robert C Malenka, Patrick E Rothwell, Marc V Fuccillo, Thomas C Südhof, Stephen R Quake. Cell Rep 2016
208
33

Extensive early motor and non-motor behavioral deficits are followed by striatal neuronal loss in knock-in Huntington's disease mice.
M A Hickey, A Kosmalska, J Enayati, R Cohen, S Zeitlin, M S Levine, M-F Chesselet. Neuroscience 2008
150
33

A large scale Huntingtin protein interaction network implicates Rho GTPase signaling pathways in Huntington disease.
Cendrine Tourette, Biao Li, Russell Bell, Shannon O'Hare, Linda S Kaltenbach, Sean D Mooney, Robert E Hughes. J Biol Chem 2014
57
33

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Damian Szklarczyk, Annika L Gable, Katerina C Nastou, David Lyon, Rebecca Kirsch, Sampo Pyysalo, Nadezhda T Doncheva, Marc Legeay, Tao Fang, Peer Bork,[...]. Nucleic Acids Res 2021
929
33

Global Interactomics Uncovers Extensive Organellar Targeting by Zika Virus.
Etienne Coyaud, Charlene Ranadheera, Derrick Cheng, João Gonçalves, Boris J A Dyakov, Estelle M N Laurent, Jonathan St-Germain, Laurence Pelletier, Anne-Claude Gingras, John H Brumell,[...]. Mol Cell Proteomics 2018
71
33

An integrative approach to ortholog prediction for disease-focused and other functional studies.
Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, Stephanie E Mohr. BMC Bioinformatics 2011
365
33

Genome-wide In Vivo CNS Screening Identifies Genes that Modify CNS Neuronal Survival and mHTT Toxicity.
Mary H Wertz, Mollie R Mitchem, S Sebastian Pineda, Lea J Hachigian, Hyeseung Lee, Vanessa Lau, Alex Powers, Ruth Kulicke, Gurrein K Madan, Medina Colic,[...]. Neuron 2020
28
33

HDNetDB: A Molecular Interaction Database for Network-Oriented Investigations into Huntington's Disease.
Ravi Kiran Reddy Kalathur, José Pedro Pinto, Biswanath Sahoo, Gautam Chaurasia, Matthias E Futschik. Sci Rep 2017
12
33


The cryo-electron microscopy structure of huntingtin.
Qiang Guo, Bin Huang, Jingdong Cheng, Manuel Seefelder, Tatjana Engler, Günter Pfeifer, Patrick Oeckl, Markus Otto, Franziska Moser, Melanie Maurer,[...]. Nature 2018
76
33

Time course of early motor and neuropathological anomalies in a knock-in mouse model of Huntington's disease with 140 CAG repeats.
Liliana B Menalled, Jessica D Sison, Ioannis Dragatsis, Scott Zeitlin, Marie-Françoise Chesselet. J Comp Neurol 2003
341
33

Complete suppression of Htt fibrilization and disaggregation of Htt fibrils by a trimeric chaperone complex.
Annika Scior, Alexander Buntru, Kristin Arnsburg, Anne Ast, Manuel Iburg, Katrin Juenemann, Maria Lucia Pigazzini, Barbara Mlody, Dmytro Puchkov, Josef Priller,[...]. EMBO J 2018
64
33

bioDBnet: the biological database network.
Uma Mudunuri, Anney Che, Ming Yi, Robert M Stephens. Bioinformatics 2009
211
33


SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
Hyungwon Choi, Brett Larsen, Zhen-Yuan Lin, Ashton Breitkreutz, Dattatreya Mellacheruvu, Damian Fermin, Zhaohui S Qin, Mike Tyers, Anne-Claude Gingras, Alexey I Nesvizhskii. Nat Methods 2011
459
33


Increased apoptosis and early embryonic lethality in mice nullizygous for the Huntington's disease gene homologue.
S Zeitlin, J P Liu, D L Chapman, V E Papaioannou, A Efstratiadis. Nat Genet 1995
573
33

The pathogenic exon 1 HTT protein is produced by incomplete splicing in Huntington's disease patients.
Andreas Neueder, Christian Landles, Rhia Ghosh, David Howland, Richard H Myers, Richard L M Faull, Sarah J Tabrizi, Gillian P Bates. Sci Rep 2017
91
33

Transneuronal propagation of mutant huntingtin contributes to non-cell autonomous pathology in neurons.
Eline Pecho-Vrieseling, Claus Rieker, Sascha Fuchs, Dorothee Bleckmann, Maria Soledad Esposito, Paolo Botta, Chris Goldstein, Mario Bernhard, Ivan Galimberti, Matthias Müller,[...]. Nat Neurosci 2014
116
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.