A citation-based method for searching scientific literature

Stephanie Chrysanthou, Qin Tang, Joun Lee, Samuel J Taylor, Yilin Zhao, Ulrich Steidl, Deyou Zheng, Meelad M Dawlaty. Nucleic Acids Res 2022
Times Cited: 4







List of co-cited articles
23 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development.
Meelad M Dawlaty, Kibibi Ganz, Benjamin E Powell, Yueh-Chiang Hu, Styliani Markoulaki, Albert W Cheng, Qing Gao, Jongpil Kim, Sang-Woon Choi, David C Page,[...]. Cell Stem Cell 2011
350
100

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.
Kian Peng Koh, Akiko Yabuuchi, Sridhar Rao, Yun Huang, Kerrianne Cunniff, Julie Nardone, Asta Laiho, Mamta Tahiliani, Cesar A Sommer, Gustavo Mostoslavsky,[...]. Cell Stem Cell 2011
551
100

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
716
100

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.
Hao Wu, Ana C D'Alessio, Shinsuke Ito, Kai Xia, Zhibin Wang, Kairong Cui, Keji Zhao, Yi Eve Sun, Yi Zhang. Nature 2011
470
100

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
75

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.
William A Pastor, L Aravind, Anjana Rao. Nat Rev Mol Cell Biol 2013
561
75

Loss of Tet enzymes compromises proper differentiation of embryonic stem cells.
Meelad M Dawlaty, Achim Breiling, Thuc Le, M Inmaculada Barrasa, Günter Raddatz, Qing Gao, Benjamin E Powell, Albert W Cheng, Kym F Faull, Frank Lyko,[...]. Dev Cell 2014
204
75

Tet proteins connect the O-linked N-acetylglucosamine transferase Ogt to chromatin in embryonic stem cells.
Pietro Vella, Andrea Scelfo, Sriganesh Jammula, Fulvio Chiacchiera, Kristine Williams, Alessandro Cuomo, Alessandra Roberto, Jesper Christensen, Tiziana Bonaldi, Kristian Helin,[...]. Mol Cell 2013
225
75

Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.
Meelad M Dawlaty, Achim Breiling, Thuc Le, Günter Raddatz, M Inmaculada Barrasa, Albert W Cheng, Qing Gao, Benjamin E Powell, Zhe Li, Mingjiang Xu,[...]. Dev Cell 2013
293
50

Rinf Regulates Pluripotency Network Genes and Tet Enzymes in Embryonic Stem Cells.
Mirunalini Ravichandran, Run Lei, Qin Tang, Yilin Zhao, Joun Lee, Liyang Ma, Stephanie Chrysanthou, Benjamin M Lorton, Ales Cvekl, David Shechter,[...]. Cell Rep 2019
13
50

Intrinsic and extrinsic connections of Tet3 dioxygenase with CXXC zinc finger modules.
Nan Liu, Mengxi Wang, Wen Deng, Christine S Schmidt, Weihua Qin, Heinrich Leonhardt, Fabio Spada. PLoS One 2013
30
50

TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells.
Kasper D Rasmussen, Ivan Berest, Sandra Keβler, Koutarou Nishimura, Lucía Simón-Carrasco, George S Vassiliou, Marianne T Pedersen, Jesper Christensen, Judith B Zaugg, Kristian Helin. Genome Res 2019
34
50

Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX.
Myunggon Ko, Jungeun An, Hozefa S Bandukwala, Lukas Chavez, Tarmo Aijö, William A Pastor, Matthew F Segal, Huiming Li, Kian Peng Koh, Harri Lähdesmäki,[...]. Nature 2013
247
50

A Critical Role of TET1/2 Proteins in Cell-Cycle Progression of Trophoblast Stem Cells.
Stephanie Chrysanthou, Claire E Senner, Laura Woods, Elena Fineberg, Hanneke Okkenhaug, Sarah Burge, Vicente Perez-Garcia, Myriam Hemberger. Stem Cell Reports 2018
26
50

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
50

p53-Suppressed Oncogene TET1 Prevents Cellular Aging in Lung Cancer.
Piotr T Filipczak, Shuguang Leng, Carmen S Tellez, Kieu C Do, Marcie J Grimes, Cynthia L Thomas, Stephanie R Walton-Filipczak, Maria A Picchi, Steven A Belinsky. Cancer Res 2019
21
50

NANOG-dependent function of TET1 and TET2 in establishment of pluripotency.
Yael Costa, Junjun Ding, Thorold W Theunissen, Francesco Faiola, Timothy A Hore, Pavel V Shliaha, Miguel Fidalgo, Arven Saunders, Moyra Lawrence, Sabine Dietmann,[...]. Nature 2013
290
50

Vitamin C modulates TET1 function during somatic cell reprogramming.
Jiekai Chen, Lin Guo, Lei Zhang, Haoyu Wu, Jiaqi Yang, He Liu, Xiaoshan Wang, Xiao Hu, Tianpeng Gu, Zhiwei Zhou,[...]. Nat Genet 2013
200
50

TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS.
Rachel Deplus, Benjamin Delatte, Marie K Schwinn, Matthieu Defrance, Jacqui Méndez, Nancy Murphy, Mark A Dawson, Michael Volkmar, Pascale Putmans, Emilie Calonne,[...]. EMBO J 2013
339
50

Sin3a-Tet1 interaction activates gene transcription and is required for embryonic stem cell pluripotency.
Fugui Zhu, Qianshu Zhu, Dan Ye, Qingquan Zhang, Yiwei Yang, Xudong Guo, Zhenping Liu, Zeyidan Jiapaer, Xiaoping Wan, Guiying Wang,[...]. Nucleic Acids Res 2018
24
50

5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.
Gary C Hon, Chun-Xiao Song, Tingting Du, Fulai Jin, Siddarth Selvaraj, Ah Young Lee, Chia-An Yen, Zhen Ye, Shi-Qing Mao, Bang-An Wang,[...]. Mol Cell 2014
217
50

Cooperative Action between SALL4A and TET Proteins in Stepwise Oxidation of 5-Methylcytosine.
Jun Xiong, Zhuqiang Zhang, Jiayu Chen, Hua Huang, Yali Xu, Xiaojun Ding, Yong Zheng, Ryuichi Nishinakamura, Guo-Liang Xu, Hailin Wang,[...]. Mol Cell 2016
73
50

Zfp281 Coordinates Opposing Functions of Tet1 and Tet2 in Pluripotent States.
Miguel Fidalgo, Xin Huang, Diana Guallar, Carlos Sanchez-Priego, Victor Julian Valdes, Arven Saunders, Junjun Ding, Wen-Shu Wu, Carlos Clavel, Jianlong Wang. Cell Stem Cell 2016
59
50

RINF (CXXC5) is overexpressed in solid tumors and is an unfavorable prognostic factor in breast cancer.
S Knappskog, L M Myklebust, C Busch, T Aloysius, J E Varhaug, P E Lønning, J R Lillehaug, F Pendino. Ann Oncol 2011
30
25

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
25

QSER1 protects DNA methylation valleys from de novo methylation.
Gary Dixon, Heng Pan, Dapeng Yang, Bess P Rosen, Therande Jashari, Nipun Verma, Julian Pulecio, Inbal Caspi, Kihyun Lee, Stephanie Stransky,[...]. Science 2021
21
25

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
25

The Dishevelled-binding protein CXXC5 negatively regulates cutaneous wound healing.
Soung-Hoon Lee, Mi-Yeon Kim, Hyun-Yi Kim, Young-Mi Lee, Heesu Kim, Kyoung Ae Nam, Mi Ryung Roh, Do Sik Min, Kee Yang Chung, Kang-Yell Choi. J Exp Med 2015
38
25

CXXC5 plays a role as a transcription activator for myelin genes on oligodendrocyte differentiation.
Mi-Yeon Kim, Hyun-Yi Kim, Jiso Hong, Daesoo Kim, Hyojung Lee, Eunji Cheong, Yangsin Lee, Jürgen Roth, Dong Goo Kim, Do Sik Min,[...]. Glia 2016
17
25

Epigenetic regulator CXXC5 recruits DNA demethylase Tet2 to regulate TLR7/9-elicited IFN response in pDCs.
Shixin Ma, Xiaoling Wan, Zihou Deng, Lei Shi, Congfang Hao, Zhenyuan Zhou, Chun Zhou, Yiyuan Fang, Jinghua Liu, Jing Yang,[...]. J Exp Med 2017
50
25


CXXC5 regulates differentiation of C2C12 myoblasts into myocytes.
Guangming Li, Xiangli Ye, Xiyang Peng, Yun Deng, Wuzhou Yuan, Yongqing Li, Xiaoyang Mo, Xijun Wang, Yongqi Wan, Xianchu Liu,[...]. J Muscle Res Cell Motil 2014
14
25

A novel Wilms tumor 1 (WT1) target gene negatively regulates the WNT signaling pathway.
Myoung Shin Kim, Seung Kew Yoon, Frank Bollig, Jirouta Kitagaki, Wonhee Hur, Nathan J Whye, Yun-Ping Wu, Miguel N Rivera, Jik Young Park, Ho-Shik Kim,[...]. J Biol Chem 2010
75
25

Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis.
Frédéric Pendino, Eric Nguyen, Inge Jonassen, Bjarte Dysvik, Abdulkader Azouz, Michel Lanotte, Evelyne Ségal-Bendirdjian, Johan R Lillehaug. Blood 2009
45
25


One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.
Haoyi Wang, Hui Yang, Chikdu S Shivalila, Meelad M Dawlaty, Albert W Cheng, Feng Zhang, Rudolf Jaenisch. Cell 2013
25

CXXC5 is a transcriptional activator of Flk-1 and mediates bone morphogenic protein-induced endothelial cell differentiation and vessel formation.
Hyun-Yi Kim, Dong-Hwa Yang, Song-Weon Shin, Mi-Yeon Kim, Jae-Hyun Yoon, Suhyun Kim, Hae-Chul Park, Dong Woo Kang, Dosik Min, Man-Wook Hur,[...]. FASEB J 2014
27
25

Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis.
Liyang Ma, Qin Tang, Xin Gao, Joun Lee, Run Lei, Masako Suzuki, Deyou Zheng, Keisuke Ito, Paul S Frenette, Meelad M Dawlaty. Sci Adv 2022
2
50

Hypercholesterolemia Accelerates the Aging Phenotypes of Hematopoietic Stem Cells by a Tet1-Dependent Pathway.
Guodong Tie, Jinglian Yan, Lyne Khair, Amanda Tutto, Louis M Messina. Sci Rep 2020
6
25

Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth in developing mice.
Alberto Roselló-Díez, Linda Madisen, Sébastien Bastide, Hongkui Zeng, Alexandra L Joyner. PLoS Biol 2018
25
25

Direct cell reprogramming is a stochastic process amenable to acceleration.
Jacob Hanna, Krishanu Saha, Bernardo Pando, Jeroen van Zon, Christopher J Lengner, Menno P Creyghton, Alexander van Oudenaarden, Rudolf Jaenisch. Nature 2009
722
25

Mir-290-295 deficiency in mice results in partially penetrant embryonic lethality and germ cell defects.
Lea A Medeiros, Lucas M Dennis, Mark E Gill, Hristo Houbaviy, Styliani Markoulaki, Dongdong Fu, Amy C White, Oktay Kirak, Phillip A Sharp, David C Page,[...]. Proc Natl Acad Sci U S A 2011
118
25

The miR-290-295 cluster promotes pluripotency maintenance by regulating cell cycle phase distribution in mouse embryonic stem cells.
Zsuzsanna Lichner, Emoke Páll, Andrea Kerekes, Eva Pállinger, Pouneh Maraghechi, Zsuzsanna Bosze, Elen Gócza. Differentiation 2011
75
25

Tet1 is required for Rb phosphorylation during G1/S phase transition.
Shengsong Huang, Ziqi Zhu, Yiqin Wang, Yanru Wang, Longxia Xu, Xuemei Chen, Qing Xu, Qimin Zhang, Xin Zhao, Yi Yu,[...]. Biochem Biophys Res Commun 2013
9
25

Histone modifications and p53 binding poise the p21 promoter for activation in human embryonic stem cells.
Yoko Itahana, Jinqiu Zhang, Jonathan Göke, Leah A Vardy, Rachel Han, Kozue Iwamoto, Engin Cukuroglu, Paul Robson, Mahmoud A Pouladi, Alan Colman,[...]. Sci Rep 2016
16
25

Genome-wide mapping of in vivo protein-DNA interactions.
David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold. Science 2007
25

Cell cycle control of embryonic stem cells.
Josephine White, Stephen Dalton. Stem Cell Rev 2005
239
25

Transcriptional regulation of the p21((WAF1/CIP1)) gene.
A L Gartel, A L Tyner. Exp Cell Res 1999
567
25

Embryonic stem cell-specific microRNAs regulate the G1-S transition and promote rapid proliferation.
Yangming Wang, Scott Baskerville, Archana Shenoy, Joshua E Babiarz, Lauren Baehner, Robert Blelloch. Nat Genet 2008
496
25

Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.
Yawei Gao, Jiayu Chen, Ke Li, Tong Wu, Bo Huang, Wenqiang Liu, Xiaochen Kou, Yu Zhang, Hua Huang, Yonghua Jiang,[...]. Cell Stem Cell 2013
242
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.