A citation-based method for searching scientific literature

Lingyu Li, Lin Cheng, Ri Sa, Xian Qiu, Libo Chen. Crit Rev Oncol Hematol 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Probabilistic Prognostic Estimates of Survival in Metastatic Cancer Patients (PPES-Met) Utilizing Free-Text Clinical Narratives.
Imon Banerjee, Michael Francis Gensheimer, Douglas J Wood, Solomon Henry, Sonya Aggarwal, Daniel T Chang, Daniel L Rubin. Sci Rep 2018
11
100

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Jordi Barretina, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, Joseph Lehár, Gregory V Kryukov, Dmitriy Sonkin,[...]. Nature 2012
100

Drug repurposing in oncology.
Maria Frantzi, Agnieszka Latosinska, Marika Mokou, Harald Mischak, Antonia Vlahou. Lancet Oncol 2020
13
100

10
100

Repurposing drugs in oncology: From candidate selection to clinical adoption.
Pan Pantziarka, Ciska Verbaanderd, Isabelle Huys, Gauthier Bouche, Lydie Meheus. Semin Cancer Biol 2021
16
100

Systematic prediction of drug combinations based on clinical side-effects.
Hui Huang, Ping Zhang, Xiaoyan A Qu, Philippe Sanseau, Lun Yang. Sci Rep 2014
35
100


In silico drug combination discovery for personalized cancer therapy.
Minji Jeon, Sunkyu Kim, Sungjoon Park, Heewon Lee, Jaewoo Kang. BMC Syst Biol 2018
25
100

A medicinal chemistry perspective of drug repositioning: Recent advances and challenges in drug discovery.
Thanigaimalai Pillaiyar, Sangeetha Meenakshisundaram, Manoj Manickam, Murugesan Sankaranarayanan. Eur J Med Chem 2020
34
100

Relating protein pharmacology by ligand chemistry.
Michael J Keiser, Bryan L Roth, Blaine N Armbruster, Paul Ernsberger, John J Irwin, Brian K Shoichet. Nat Biotechnol 2007
100

Predicting healthcare trajectories from medical records: A deep learning approach.
Trang Pham, Truyen Tran, Dinh Phung, Svetha Venkatesh. J Biomed Inform 2017
80
100

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality.
Hua Xu, Melinda C Aldrich, Qingxia Chen, Hongfang Liu, Neeraja B Peterson, Qi Dai, Mia Levy, Anushi Shah, Xue Han, Xiaoyang Ruan,[...]. J Am Med Inform Assoc 2015
120
100

Drug repurposing in cancer.
Linda Sleire, Hilde Elise Førde, Inger Anne Netland, Lina Leiss, Bente Sandvei Skeie, Per Øyvind Enger. Pharmacol Res 2017
140
100

sc-PDB: a 3D-database of ligandable binding sites--10 years on.
Jérémy Desaphy, Guillaume Bret, Didier Rognan, Esther Kellenberger. Nucleic Acids Res 2015
107
100

Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges.
Duc Duy Nguyen, Zixuan Cang, Kedi Wu, Menglun Wang, Yin Cao, Guo-Wei Wei. J Comput Aided Mol Des 2019
61
100

Machine learning approaches and databases for prediction of drug-target interaction: a survey paper.
Maryam Bagherian, Elyas Sabeti, Kai Wang, Maureen A Sartor, Zaneta Nikolovska-Coleska, Kayvan Najarian. Brief Bioinform 2021
61
100

Drugs that lack single-agent activity: are they worth pursuing in combination?
Bishal Gyawali, Vinay Prasad. Nat Rev Clin Oncol 2017
16
100

RepCOOL: computational drug repositioning via integrating heterogeneous biological networks.
Ghazale Fahimian, Javad Zahiri, Seyed Shahriar Arab, Reza H Sajedi. J Transl Med 2020
6
100

Trends in clinical success rates and therapeutic focus.
Helen Dowden, Jamie Munro. Nat Rev Drug Discov 2019
112
100

Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.
Tanya Barrett, Ron Edgar. Methods Mol Biol 2006
108
100

A phenome-guided drug repositioning through a latent variable model.
Halil Bisgin, Zhichao Liu, Hong Fang, Reagan Kelly, Xiaowei Xu, Weida Tong. BMC Bioinformatics 2014
20
100

The ChEMBL database in 2017.
Anna Gaulton, Anne Hersey, Michał Nowotka, A Patrícia Bento, Jon Chambers, David Mendez, Prudence Mutowo, Francis Atkinson, Louisa J Bellis, Elena Cibrián-Uhalte,[...]. Nucleic Acids Res 2017
911
100

Database resources of the National Center for Biotechnology Information.
Eric W Sayers, Richa Agarwala, Evan E Bolton, J Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon,[...]. Nucleic Acids Res 2019
259
100

Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing.
Hansaim Lim, Aleksandar Poleksic, Yuan Yao, Hanghang Tong, Di He, Luke Zhuang, Patrick Meng, Lei Xie. PLoS Comput Biol 2016
35
100


Drug rechanneling: A novel paradigm for cancer treatment.
Itishree Kaushik, Sharavan Ramachandran, Sahdeo Prasad, Sanjay K Srivastava. Semin Cancer Biol 2021
16
100

Drug repurposing in oncology--patient and health systems opportunities.
Francesco Bertolini, Vikas P Sukhatme, Gauthier Bouche. Nat Rev Clin Oncol 2015
161
100

Linking drug target and pathway activation for effective therapy using multi-task learning.
Mi Yang, Jaak Simm, Chi Chung Lam, Pooya Zakeri, Gerard J P van Westen, Yves Moreau, Julio Saez-Rodriguez. Sci Rep 2018
24
100

Data science, learning, and applications to biomedical and health sciences.
Nabil R Adam, Robert Wieder, Debopriya Ghosh. Ann N Y Acad Sci 2017
13
100

Drug repurposing in oncology - Authors' reply.
Audrey A Tran, Vinay Prasad. Lancet Oncol 2020
1
100

Repurposing existing drugs for new uses: a cohort study of the frequency of FDA-granted new indication exclusivities since 1997.
Babak Sahragardjoonegani, Reed F Beall, Aaron S Kesselheim, Aidan Hollis. J Pharm Policy Pract 2021
7
100

Therapeutic Targeting of the Colorectal Tumor Stroma.
Wolf H Fridman, Ian Miller, Catherine Sautès-Fridman, Annette T Byrne. Gastroenterology 2020
20
100


BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology.
Michael K Gilson, Tiqing Liu, Michael Baitaluk, George Nicola, Linda Hwang, Jenny Chong. Nucleic Acids Res 2016
479
100

Old wine in new bottles: Drug repurposing in oncology.
Michał Antoszczak, Anna Markowska, Janina Markowska, Adam Huczyński. Eur J Pharmacol 2020
33
100

Diagnosing the decline in pharmaceutical R&D efficiency.
Jack W Scannell, Alex Blanckley, Helen Boldon, Brian Warrington. Nat Rev Drug Discov 2012
873
100

PubChem 2019 update: improved access to chemical data.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A Shoemaker, Paul A Thiessen, Bo Yu,[...]. Nucleic Acids Res 2019
100

Design and application of a knowledge network for automatic prioritization of drug mechanisms.
Michael Mayers, Roger Tu, Dylan Steinecke, Tong Shu Li, Núria Queralt-Rosinach, Andrew I Su. Bioinformatics 2022
1
100

Systematic integration of biomedical knowledge prioritizes drugs for repurposing.
Daniel Scott Himmelstein, Antoine Lizee, Christine Hessler, Leo Brueggeman, Sabrina L Chen, Dexter Hadley, Ari Green, Pouya Khankhanian, Sergio E Baranzini. Elife 2017
112
100




The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.
Alexandra B Keenan, Sherry L Jenkins, Kathleen M Jagodnik, Simon Koplev, Edward He, Denis Torre, Zichen Wang, Anders B Dohlman, Moshe C Silverstein, Alexander Lachmann,[...]. Cell Syst 2018
178
100

Drug repositioning: identifying and developing new uses for existing drugs.
Ted T Ashburn, Karl B Thor. Nat Rev Drug Discov 2004
100

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.
Ahmet Sureyya Rifaioglu, Heval Atas, Maria Jesus Martin, Rengul Cetin-Atalay, Volkan Atalay, Tunca Doğan. Brief Bioinform 2019
120
100

Drug Repurposing in Oncology, an Attractive Opportunity for Novel Combinatorial Regimens.
Paolo Falvo, Stefania Orecchioni, Stefania Roma, Alessandro Raveane, Francesco Bertolini. Curr Med Chem 2021
4
100

Integrated Network Pharmacology Approach for Drug Combination Discovery: A Multi-Cancer Case Study.
Antonio Federico, Michele Fratello, Giovanni Scala, Lena Möbus, Alisa Pavel, Giusy Del Giudice, Michele Ceccarelli, Valerio Costa, Alfredo Ciccodicola, Vittorio Fortino,[...]. Cancers (Basel) 2022
1
100

In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data.
Remzi Celebi, Oliver Bear Don't Walk, Rajiv Movva, Semih Alpsoy, Michel Dumontier. Sci Rep 2019
29
100

Comprehensive analysis of kinase inhibitor selectivity.
Mindy I Davis, Jeremy P Hunt, Sanna Herrgard, Pietro Ciceri, Lisa M Wodicka, Gabriel Pallares, Michael Hocker, Daniel K Treiber, Patrick P Zarrinkar. Nat Biotechnol 2011
100

Drug resistance in cancer: a perspective.
J H Goldie. Cancer Metastasis Rev 2001
59
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.