A citation-based method for searching scientific literature

Lei-Lei Chen, Carmen Morcelle, Zhou-Li Cheng, Xiufei Chen, Yanping Xu, Yajing Gao, Junbin Song, Zhijun Li, Matthew D Smith, Miao Shi, Yezhang Zhu, Neng Zhou, Meng Cheng, Chenxi He, Kwei-Yan Liu, Guoping Lu, Lei Zhang, Cheng Zhang, Jinye Zhang, Yiping Sun, Tuan Qi, Yingying Lyu, Zhi-Zhong Ren, Xian-Ming Tan, Jiayong Yin, Fei Lan, Ying Liu, Hui Yang, Maoxiang Qian, Caiwen Duan, Xing Chang, Yufeng Zhou, Li Shen, Albert S Baldwin, Kun-Liang Guan, Yue Xiong, Dan Ye. Nat Cell Biol 2022
Times Cited: 3







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genetic characterization of TET1, TET2, and TET3 alterations in myeloid malignancies.
Omar Abdel-Wahab, Ann Mullally, Cyrus Hedvat, Guillermo Garcia-Manero, Jay Patel, Martha Wadleigh, Sebastien Malinge, JinJuan Yao, Outi Kilpivaara, Rukhmi Bhat,[...]. Blood 2009
537
66

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
66

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
66


COBRA: a sensitive and quantitative DNA methylation assay.
Z Xiong, P W Laird. Nucleic Acids Res 1997
933
33

The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate.
Patrick S Ward, Jay Patel, David R Wise, Omar Abdel-Wahab, Bryson D Bennett, Hilary A Coller, Justin R Cross, Valeria R Fantin, Cyrus V Hedvat, Alexander E Perl,[...]. Cancer Cell 2010
33

Selective targeting of TET catalytic domain promotes somatic cell reprogramming.
Anup Kumar Singh, Bo Zhao, Xiuhua Liu, Xin Wang, Hongzhi Li, Hanjun Qin, Xiwei Wu, Yuelong Ma, David Horne, Xiaochun Yu. Proc Natl Acad Sci U S A 2020
20
33

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
Altuna Akalin, Matthias Kormaksson, Sheng Li, Francine E Garrett-Bakelman, Maria E Figueroa, Ari Melnick, Christopher E Mason. Genome Biol 2012
830
33

Mutations in the isocitrate dehydrogenase genes IDH1 and IDH2 in tumors.
Frank G Schaap, Pim J French, Judith V M G Bovée. Adv Anat Pathol 2013
53
33

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity.
Paul Adrian Ginno, Dimos Gaidatzis, Angelika Feldmann, Leslie Hoerner, Dilek Imanci, Lukas Burger, Frederic Zilbermann, Antoine H F M Peters, Frank Edenhofer, Sébastien A Smallwood,[...]. Nat Commun 2020
48
33

5-hydroxymethylcytosine and its potential roles in development and cancer.
Gerd P Pfeifer, Swati Kadam, Seung-Gi Jin. Epigenetics Chromatin 2013
121
33

Accumulation of Krebs cycle intermediates and over-expression of HIF1alpha in tumours which result from germline FH and SDH mutations.
P J Pollard, J J Brière, N A Alam, J Barwell, E Barclay, N C Wortham, T Hunt, M Mitchell, S Olpin, S J Moat,[...]. Hum Mol Genet 2005
634
33

Quantitative classification of chromatin dynamics reveals regulators of intestinal stem cell differentiation.
Jesse R Raab, Deepthi Y Tulasi, Kortney E Wager, Jeremy M Morowitz, Scott T Magness, Adam D Gracz. Development 2020
13
33


Immortalization of human bronchial epithelial cells in the absence of viral oncoproteins.
Ruben D Ramirez, Shelley Sheridan, Luc Girard, Mitsuo Sato, Young Kim, Jon Pollack, Michael Peyton, Ying Zou, Jonathan M Kurie, J Michael Dimaio,[...]. Cancer Res 2004
482
33

Inborn and acquired metabolic defects in cancer.
Christian Frezza, Patrick J Pollard, Eyal Gottlieb. J Mol Med (Berl) 2011
111
33

Fumarate and Succinate Regulate Expression of Hypoxia-inducible Genes via TET Enzymes.
Tuomas Laukka, Christopher J Mariani, Tuukka Ihantola, John Z Cao, Juho Hokkanen, William G Kaelin, Lucy A Godley, Peppi Koivunen. J Biol Chem 2016
165
33

Clinical implications of the oncometabolite succinate in SDHx-mutation carriers.
Karin Eijkelenkamp, Thamara E Osinga, Thera P Links, Anouk N A van der Horst-Schrivers. Clin Genet 2020
19
33

Inhibition of α-KG-dependent histone and DNA demethylases by fumarate and succinate that are accumulated in mutations of FH and SDH tumor suppressors.
Mengtao Xiao, Hui Yang, Wei Xu, Shenghong Ma, Huaipeng Lin, Honguang Zhu, Lixia Liu, Ying Liu, Chen Yang, Yanhui Xu,[...]. Genes Dev 2012
607
33



The role of 5-hydroxymethylcytosine in human cancer.
Gerd P Pfeifer, Wenying Xiong, Maria A Hahn, Seung-Gi Jin. Cell Tissue Res 2014
54
33

DNA methylation and DNA methyltransferases.
John R Edwards, Olya Yarychkivska, Mathieu Boulard, Timothy H Bestor. Epigenetics Chromatin 2017
202
33

Eukaryotic Base Excision Repair: New Approaches Shine Light on Mechanism.
William A Beard, Julie K Horton, Rajendra Prasad, Samuel H Wilson. Annu Rev Biochem 2019
70
33

SDH mutations establish a hypermethylator phenotype in paraganglioma.
Eric Letouzé, Cosimo Martinelli, Céline Loriot, Nelly Burnichon, Nasséra Abermil, Chris Ottolenghi, Maxime Janin, Mélanie Menara, An Thach Nguyen, Paule Benit,[...]. Cancer Cell 2013
461
33

Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing.
Keegan Korthauer, Sutirtha Chakraborty, Yuval Benjamini, Rafael A Irizarry. Biostatistics 2019
53
33


The chromosomal protein SMCHD1 regulates DNA methylation and the 2c-like state of embryonic stem cells by antagonizing TET proteins.
Zhijun Huang, Jiyoung Yu, Wei Cui, Benjamin K Johnson, Kyunggon Kim, Gerd P Pfeifer. Sci Adv 2021
7
33

Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor.
J Keith Killian, Su Young Kim, Markku Miettinen, Carly Smith, Maria Merino, Maria Tsokos, Martha Quezado, William I Smith, Mona S Jahromi, Paraskevi Xekouki,[...]. Cancer Discov 2013
219
33

TET family dioxygenases and DNA demethylation in stem cells and cancers.
Jungeun An, Anjana Rao, Myunggon Ko. Exp Mol Med 2017
81
33

Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation.
Maria E Figueroa, Omar Abdel-Wahab, Chao Lu, Patrick S Ward, Jay Patel, Alan Shih, Yushan Li, Neha Bhagwat, Aparna Vasanthakumar, Hugo F Fernandez,[...]. Cancer Cell 2010
33


Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.
Lenny Dang, David W White, Stefan Gross, Bryson D Bennett, Mark A Bittinger, Edward M Driggers, Valeria R Fantin, Hyun Gyung Jang, Shengfang Jin, Marie C Keenan,[...]. Nature 2009
33

TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers.
Jocelyn Charlton, Eunmi J Jung, Alexandra L Mattei, Nina Bailly, Jing Liao, Eric J Martin, Pay Giesselmann, Björn Brändl, Elena K Stamenova, Franz-Josef Müller,[...]. Nat Genet 2020
34
33

IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype.
Sevin Turcan, Daniel Rohle, Anuj Goenka, Logan A Walsh, Fang Fang, Emrullah Yilmaz, Carl Campos, Armida W M Fabius, Chao Lu, Patrick S Ward,[...]. Nature 2012
33

Oncogenic Activities of IDH1/2 Mutations: From Epigenetics to Cellular Signaling.
Laurence M Gagné, Karine Boulay, Ivan Topisirovic, Marc-Étienne Huot, Frédérick A Mallette. Trends Cell Biol 2017
66
33

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma.
Houtan Noushmehr, Daniel J Weisenberger, Kristin Diefes, Heidi S Phillips, Kanan Pujara, Benjamin P Berman, Fei Pan, Christopher E Pelloski, Erik P Sulman, Krishna P Bhat,[...]. Cancer Cell 2010
33

Rapid turnover of DNA methylation in human cells.
Yoshiaki Yamagata, Pàl Szabó, David Szüts, Caroline Bacquet, Tamàs Arànyi, Andras Páldi. Epigenetics 2012
34
33

5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations.
Seung-Gi Jin, Yong Jiang, Runxiang Qiu, Tibor A Rauch, Yinsheng Wang, Gabriele Schackert, Dietmar Krex, Qiang Lu, Gerd P Pfeifer. Cancer Res 2011
334
33

Germline mutations in FH predispose to dominantly inherited uterine fibroids, skin leiomyomata and papillary renal cell cancer.
Ian P M Tomlinson, N Afrina Alam, Andrew J Rowan, Ella Barclay, Emma E M Jaeger, David Kelsell, Irene Leigh, Patricia Gorman, Hanan Lamlum, Shamima Rahman,[...]. Nat Genet 2002
33

Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.
Wei Xu, Hui Yang, Ying Liu, Ying Yang, Ping Wang, Se-Hee Kim, Shinsuke Ito, Chen Yang, Pu Wang, Meng-Tao Xiao,[...]. Cancer Cell 2011
33

Macrophages and the maintenance of homeostasis.
David M Mosser, Kajal Hamidzadeh, Ricardo Goncalves. Cell Mol Immunol 2021
44
33


The complex relationship between TFEB transcription factor phosphorylation and subcellular localization.
Rosa Puertollano, Shawn M Ferguson, James Brugarolas, Andrea Ballabio. EMBO J 2018
202
33

S-glycosylation-based cysteine profiling reveals regulation of glycolysis by itaconate.
Wei Qin, Ke Qin, Yanling Zhang, Wentong Jia, Ying Chen, Bo Cheng, Linghang Peng, Nan Chen, Yuan Liu, Wen Zhou,[...]. Nat Chem Biol 2019
82
33

An Evolutionarily Conserved PLC-PKD-TFEB Pathway for Host Defense.
Mehran Najibi, Sid Ahmed Labed, Orane Visvikis, Javier Elbio Irazoqui. Cell Rep 2016
36
33

Immune-responsive gene 1 protein links metabolism to immunity by catalyzing itaconic acid production.
Alessandro Michelucci, Thekla Cordes, Jenny Ghelfi, Arnaud Pailot, Norbert Reiling, Oliver Goldmann, Tina Binz, André Wegner, Aravind Tallam, Antonio Rausell,[...]. Proc Natl Acad Sci U S A 2013
504
33

Itaconate: the poster child of metabolic reprogramming in macrophage function.
Luke A J O'Neill, Maxim N Artyomov. Nat Rev Immunol 2019
165
33

The Transcription Factors TFEB and TFE3 Link the FLCN-AMPK Signaling Axis to Innate Immune Response and Pathogen Resistance.
Leeanna El-Houjeiri, Elite Possik, Tarika Vijayaraghavan, Mathieu Paquette, José A Martina, Jalal M Kazan, Eric H Ma, Russell Jones, Paola Blanchette, Rosa Puertollano,[...]. Cell Rep 2019
52
33

Lysosomes as a therapeutic target.
Srinivasa Reddy Bonam, Fengjuan Wang, Sylviane Muller. Nat Rev Drug Discov 2019
145
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.