A citation-based method for searching scientific literature

Pangenomes as a Resource to Accelerate Breeding of Under-Utilised Crop Species.
Cassandria Geraldine Tay Fernandez, Benjamin John Nestor, Monica Furaste Danilevicz, Mitchell Gill, Jakob Petereit, Philipp Emanuel Bayer, Patrick Michael Finnegan, Jacqueline Batley, David Edwards. Int J Mol Sci 2022
Times Cited: 6






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List of co-cited articles
19 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Plant pan-genomes are the new reference.
Philipp E Bayer, Agnieszka A Golicz, Armin Scheben, Jacqueline Batley, David Edwards. Nat Plants 2020
146
4
66

Pan-Genome of Wild and Cultivated Soybeans.
Yucheng Liu, Huilong Du, Pengcheng Li, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Haikuan Zhang, Zhi Liu, Miao Shi,[...]. Cell 2020
226
3
50

A chickpea genetic variation map based on the sequencing of 3,366 genomes.
Rajeev K Varshney, Manish Roorkiwal, Shuai Sun, Prasad Bajaj, Annapurna Chitikineni, Mahendar Thudi, Narendra P Singh, Xiao Du, Hari D Upadhyaya, Aamir W Khan,[...]. Nature 2021
42
3
50

How the pan-genome is changing crop genomics and improvement.
Rafael Della Coletta, Yinjie Qiu, Shujun Ou, Matthew B Hufford, Candice N Hirsch. Genome Biol 2021
69
3
50

Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.
Aamir W Khan, Vanika Garg, Manish Roorkiwal, Agnieszka A Golicz, David Edwards, Rajeev K Varshney. Trends Plant Sci 2020
91
3
50

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.
Lei Gao, Itay Gonda, Honghe Sun, Qiyue Ma, Kan Bao, Denise M Tieman, Elizabeth A Burzynski-Chang, Tara L Fish, Kaitlin A Stromberg, Gavin L Sacks,[...]. Nat Genet 2019
229
2
33

Population genomic and genome-wide association studies of agroclimatic traits in sorghum.
Geoffrey P Morris, Punna Ramu, Santosh P Deshpande, C Thomas Hash, Trushar Shah, Hari D Upadhyaya, Oscar Riera-Lizarazu, Patrick J Brown, Charlotte B Acharya, Sharon E Mitchell,[...]. Proc Natl Acad Sci U S A 2013
402
2
33

Genetic strategies for improving crop yields.
Julia Bailey-Serres, Jane E Parker, Elizabeth A Ainsworth, Giles E D Oldroyd, Julian I Schroeder. Nature 2019
297
2
33

Extensive variation within the pan-genome of cultivated and wild sorghum.
Yongfu Tao, Hong Luo, Jiabao Xu, Alan Cruickshank, Xianrong Zhao, Fei Teng, Adrian Hathorn, Xiaoyuan Wu, Yuanming Liu, Tracey Shatte,[...]. Nat Plants 2021
31
2
33

Designing Future Crops: Genomics-Assisted Breeding Comes of Age.
Rajeev K Varshney, Abhishek Bohra, Jianming Yu, Andreas Graner, Qifa Zhang, Mark E Sorrells. Trends Plant Sci 2021
81
2
33

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits.
Rajeev K Varshney, Rachit K Saxena, Hari D Upadhyaya, Aamir W Khan, Yue Yu, Changhoon Kim, Abhishek Rathore, Dongseon Kim, Jihun Kim, Shaun An,[...]. Nat Genet 2017
105
2
33

Plant Pan-Genomics Comes of Age.
Li Lei, Eugene Goltsman, David Goodstein, Guohong Albert Wu, Daniel S Rokhsar, John P Vogel. Annu Rev Plant Biol 2021
19
2
33

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.
Rajeev K Varshney, Chi Song, Rachit K Saxena, Sarwar Azam, Sheng Yu, Andrew G Sharpe, Steven Cannon, Jongmin Baek, Benjamin D Rosen, Bunyamin Tar'an,[...]. Nat Biotechnol 2013
542
2
33

Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids.
Philipp E Bayer, Armin Scheben, Agnieszka A Golicz, Yuxuan Yuan, Sebastien Faure, HueyTyng Lee, Harmeet Singh Chawla, Robyn Anderson, Ian Bancroft, Harsh Raman,[...]. Plant Biotechnol J 2021
20
2
33

Structural variations in plant genomes.
Rachit K Saxena, David Edwards, Rajeev K Varshney. Brief Funct Genomics 2014
104
2
33

Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding.
Philipp E Bayer, Babu Valliyodan, Haifei Hu, Jacob I Marsh, Yuxuan Yuan, Tri D Vuong, Gunvant Patil, Qijian Song, Jacqueline Batley, Rajeev K Varshney,[...]. Plant Genome 2022
19
2
33

Plant pangenomics: approaches, applications and advancements.
Monica Furaste Danilevicz, Cassandria Geraldine Tay Fernandez, Jacob Ian Marsh, Philipp Emanuel Bayer, David Edwards. Curr Opin Plant Biol 2020
52
2
33

The pangenome of an agronomically important crop plant Brassica oleracea.
Agnieszka A Golicz, Philipp E Bayer, Guy C Barker, Patrick P Edger, HyeRan Kim, Paula A Martinez, Chon Kit Kenneth Chan, Anita Severn-Ellis, W Richard McCombie, Isobel A P Parkin,[...]. Nat Commun 2016
195
2
33

Building pan-genome infrastructures for crop plants and their use in association genetics.
Murukarthick Jayakodi, Mona Schreiber, Nils Stein, Martin Mascher. DNA Res 2021
28
2
33

Genotype-Dependent Effect of Silencing of TaCKX1 and TaCKX2 on Phytohormone Crosstalk and Yield-Related Traits in Wheat.
Bartosz Jablonski, Andrzej Bajguz, Joanna Bocian, Waclaw Orczyk, Anna Nadolska-Orczyk. Int J Mol Sci 2021
5
1
20

Crop Production under Drought and Heat Stress: Plant Responses and Management Options.
Shah Fahad, Ali A Bajwa, Usman Nazir, Shakeel A Anjum, Ayesha Farooq, Ali Zohaib, Sehrish Sadia, Wajid Nasim, Steve Adkins, Shah Saud,[...]. Front Plant Sci 2017
481
1
16

Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula.
Karen M Moll, Peng Zhou, Thiruvarangan Ramaraj, Diego Fajardo, Nicholas P Devitt, Michael J Sadowsky, Robert M Stupar, Peter Tiffin, Jason R Miller, Nevin D Young,[...]. BMC Genomics 2017
30
1
16

Transcriptomic and Metabolic Profiling of High-Temperature Treated Storage Roots Reveals the Mechanism of Saccharification in Sweetpotato (Ipomoea batatas (L.) Lam.).
Chen Li, Meng Kou, Mohamed Hamed Arisha, Wei Tang, Meng Ma, Hui Yan, Xin Wang, Xiaoxiao Wang, Yungang Zhang, Yaju Liu,[...]. Int J Mol Sci 2021
5
1
20

Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes.
Tugdem Muslu, Bala Ani Akpinar, Sezgi Biyiklioglu-Kaya, Meral Yuce, Hikmet Budak. Int J Mol Sci 2021
2
1
50

Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel.
Joseph L Gage, Brieanne Vaillancourt, John P Hamilton, Norma C Manrique-Carpintero, Timothy J Gustafson, Kerrie Barry, Anna Lipzen, William F Tracy, Mark A Mikel, Shawn M Kaeppler,[...]. Plant Genome 2019
15
1
16

Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut.
Sunil S Gangurde, Spurthi N Nayak, Pushpesh Joshi, Shilp Purohit, Hari K Sudini, Annapurna Chitikineni, Yanbin Hong, Baozhu Guo, Xiaoping Chen, Manish K Pandey,[...]. Int J Mol Sci 2021
2
1
50

Discovery and Chromosomal Location a Highly Effective Oat Crown Rust Resistance Gene Pc50-5.
Joanna Toporowska, Sylwia Sowa, Andrzej Kilian, Aneta Koroluk, Edyta Paczos-Grzęda. Int J Mol Sci 2021
2
1
50

Understanding Starch Metabolism in Pea Seeds towards Tailoring Functionality for Value-Added Utilization.
Bianyun Yu, Daoquan Xiang, Humaira Mahfuz, Nii Patterson, Dengjin Bing. Int J Mol Sci 2021
2
1
50

The anthropocene: from global change to planetary stewardship.
Will Steffen, Asa Persson, Lisa Deutsch, Jan Zalasiewicz, Mark Williams, Katherine Richardson, Carole Crumley, Paul Crutzen, Carl Folke, Line Gordon,[...]. Ambio 2011
129
1
16

Functional Genomics for Plant Breeding.
Fatemeh Maghuly, Beata Myśków, Bradley J Till. Int J Mol Sci 2021
1
1
100

Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly.
Parwinder Kaur, Christopher Lui, Olga Dudchenko, Raja Sekhar Nandety, Bhavna Hurgobin, Melanie Pham, Erez Lieberman Aiden, Jiangqi Wen, Kirankumar Mysore. Int J Mol Sci 2021
6
1
16

Molecular Network for Regulation of Ovule Number in Plants.
Muslim Qadir, Xinfa Wang, Syed Rehmat Ullah Shah, Xue-Rong Zhou, Jiaqin Shi, Hanzhong Wang. Int J Mol Sci 2021
6
1
16

Identification of Rf Genes in Hexaploid Wheat (Triticumaestivum L.) by RNA-Seq and Paralog Analyses.
Mirosław Tyrka, Beata Bakera, Magdalena Szeliga, Magdalena Święcicka, Paweł Krajewski, Monika Mokrzycka, Monika Rakoczy-Trojanowska. Int J Mol Sci 2021
2
1
50

Resequencing of 296 cultivated and wild lotus accessions unravels its evolution and breeding history.
Zhengwei Liu, Honglian Zhu, Juhong Zhou, Sanjie Jiang, Yun Wang, Jing Kuang, Qun Ji, Jing Peng, Jie Wang, Li Gao,[...]. Plant J 2020
6
1
16

Genome-wide association studies of 14 agronomic traits in rice landraces.
Xuehui Huang, Xinghua Wei, Tao Sang, Qiang Zhao, Qi Feng, Yan Zhao, Canyang Li, Chuanrang Zhu, Tingting Lu, Zhiwu Zhang,[...]. Nat Genet 2010
1054
1
16

Genome-wide identification of MADS-box gene family in sacred lotus (Nelumbo nucifera) identifies a SEPALLATA homolog gene involved in floral development.
Zhongyuan Lin, Dingding Cao, Rebecca Njeri Damaris, Pingfang Yang. BMC Plant Biol 2020
8
1
16

Genetic diversity, functional properties and expression analysis of NnSBE genes involved in starch synthesis of lotus (Nelumbo nucifera Gaertn.).
Fenglin Zhu, Han Sun, Ying Diao, Xingwen Zheng, Keqiang Xie, Zhongli Hu. PeerJ 2019
3
1
33

Comprehensive analysis of AGPase genes uncovers their potential roles in starch biosynthesis in lotus seed.
Heng Sun, Juanjuan Li, Heyun Song, Dong Yang, Xianbao Deng, Juan Liu, Yunmeng Wang, Junyu Ma, Yaqian Xiong, Yanling Liu,[...]. BMC Plant Biol 2020
4
1
25

Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid.
Zhongyuan Lin, Meihui Liu, Rebecca Njeri Damaris, Tonny Maraga Nyong'a, Dingding Cao, Kefang Ou, Pingfang Yang. Plants (Basel) 2019
12
1
16

Transcriptomic analysis identifies the key genes involved in stamen petaloid in lotus (Nelumbo nucifera).
Zhongyuan Lin, Rebecca Njeri Damaris, Tao Shi, Juanjuan Li, Pingfang Yang. BMC Genomics 2018
16
1
16

Distinct Expression and Methylation Patterns for Genes with Different Fates following a Single Whole-Genome Duplication in Flowering Plants.
Tao Shi, Razgar Seyed Rahmani, Paul F Gugger, Muhua Wang, Hui Li, Yue Zhang, Zhizhong Li, Qingfeng Wang, Yves Van de Peer, Kathleen Marchal,[...]. Mol Biol Evol 2020
43
1
16

The tomato genome sequence provides insights into fleshy fruit evolution.
. Nature 2012
1752
1
16

Proteomic and Epigenetic Analyses of Lotus (Nelumbo nucifera) Petals Between Red and White cultivars.
Jiao Deng, Ziyang Fu, Sha Chen, Rebecca Njeri Damaris, Kun Wang, Tingting Li, Pingfang Yang. Plant Cell Physiol 2015
24
1
16

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
. Nature 2000
5809
1
16

RNA-Seq Uncovers SNPs and Alternative Splicing Events in Asian Lotus (Nelumbo nucifera).
Mei Yang, Liming Xu, Yanling Liu, Pingfang Yang. PLoS One 2015
20
1
16

Genomic variation reveals demographic history and biological adaptation of the ancient relictual, lotus (Nelumbo Adans).
Xingwen Zheng, Tao Wang, Teng Cheng, Lingling Zhao, Xingfei Zheng, Fenglin Zhu, Chen Dong, Jinxing Xu, Keqiang Xie, Zhongli Hu,[...]. Hortic Res 2022
2
1
50

Comparative population genomics reveals genetic divergence and selection in lotus, Nelumbo nucifera.
Ye Li, Feng-Lin Zhu, Xing-Wen Zheng, Man-Li Hu, Chen Dong, Ying Diao, You-Wei Wang, Ke-Qiang Xie, Zhong-Li Hu. BMC Genomics 2020
9
1
16

The lotus NnFTIP1 and NnFT1 regulate flowering time in Arabidopsis.
Liang Zhang, Fan Zhang, Fangbing Liu, Jun Shen, Jiaxuan Wang, Meng Jiang, Dasheng Zhang, Pingfang Yang, Ying Chen, Shiyong Song. Plant Sci 2021
4
1
25

A CONSTANS-LIKE gene of Nelumbo nucifera could promote potato tuberization.
Dingding Cao, Zhongyuan Lin, Longyu Huang, Rebecca Njeri Damaris, Ming Li, Pingfang Yang. Planta 2021
5
1
20

Systematic qualitative and quantitative assessment of anthocyanins, flavones and flavonols in the petals of 108 lotus (Nelumbo nucifera) cultivars.
Jiao Deng, Sha Chen, Xiaojian Yin, Kun Wang, Yanling Liu, Shaohua Li, Pingfang Yang. Food Chem 2013
42
1
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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