A citation-based method for searching scientific literature

Nick Lung-Ngai Ting, Harry Cheuk-Hay Lau, Jun Yu. Gut 2022
Times Cited: 3







List of co-cited articles
5 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A defined commensal consortium elicits CD8 T cells and anti-cancer immunity.
Takeshi Tanoue, Satoru Morita, Damian R Plichta, Ashwin N Skelly, Wataru Suda, Yuki Sugiura, Seiko Narushima, Hera Vlamakis, Iori Motoo, Kayoko Sugita,[...]. Nature 2019
407
66

Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk.
W H Wilson Tang, Zeneng Wang, Bruce S Levison, Robert A Koeth, Earl B Britt, Xiaoming Fu, Yuping Wu, Stanley L Hazen. N Engl J Med 2013
66



Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota.
Marie Vétizou, Jonathan M Pitt, Romain Daillère, Patricia Lepage, Nadine Waldschmitt, Caroline Flament, Sylvie Rusakiewicz, Bertrand Routy, Maria P Roberti, Connie P M Duong,[...]. Science 2015
66

Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization.
Di Fan, Laura A Coughlin, Megan M Neubauer, Jiwoong Kim, Min Soo Kim, Xiaowei Zhan, Tiffany R Simms-Waldrip, Yang Xie, Lora V Hooper, Andrew Y Koh. Nat Med 2015
205
33

FXR Regulates Intestinal Cancer Stem Cell Proliferation.
Ting Fu, Sally Coulter, Eiji Yoshihara, Tae Gyu Oh, Sungsoon Fang, Fritz Cayabyab, Qiyun Zhu, Tong Zhang, Mathias Leblanc, Sihao Liu,[...]. Cell 2019
141
33

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.
Alejandro Reyes, Meng Wu, Nathan P McNulty, Forest L Rohwer, Jeffrey I Gordon. Proc Natl Acad Sci U S A 2013
201
33

Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome.
Kathy N Lam, Peter Spanogiannopoulos, Paola Soto-Perez, Margaret Alexander, Matthew J Nalley, Jordan E Bisanz, Renuka R Nayak, Allison M Weakley, Feiqiao B Yu, Peter J Turnbaugh. Cell Rep 2021
10
33

Endobiont viruses sensed by the human host - beyond conventional antiparasitic therapy.
Raina N Fichorova, Yujin Lee, Hidemi S Yamamoto, Yuko Takagi, Gary R Hayes, Russell P Goodman, Xenia Chepa-Lotrea, Olivia R Buck, Ryan Murray, Tomasz Kula,[...]. PLoS One 2012
87
33

Small proline-rich protein 2A is a gut bactericidal protein deployed during helminth infection.
Zehan Hu, Chenlu Zhang, Luis Sifuentes-Dominguez, Christina M Zarek, Daniel C Propheter, Zheng Kuang, Yuhao Wang, Mihir Pendse, Kelly A Ruhn, Brian Hassell,[...]. Science 2021
11
33

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.
Charlie G Buffie, Vanni Bucci, Richard R Stein, Peter T McKenney, Lilan Ling, Asia Gobourne, Daniel No, Hui Liu, Melissa Kinnebrew, Agnes Viale,[...]. Nature 2015
969
33

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn,[...]. Nature 2019
750
33

A catalog of the mouse gut metagenome.
Liang Xiao, Qiang Feng, Suisha Liang, Si Brask Sonne, Zhongkui Xia, Xinmin Qiu, Xiaoping Li, Hua Long, Jianfeng Zhang, Dongya Zhang,[...]. Nat Biotechnol 2015
258
33

Bacterial-fungal interactions in the neonatal gut influence asthma outcomes later in life.
Rozlyn Ct Boutin, Charisse Petersen, Sarah E Woodward, Antonio Serapio-Palacios, Tahereh Bozorgmehr, Rachelle Loo, Alina Chalanuchpong, Mihai Cirstea, Bernard Lo, Kelsey E Huus,[...]. Elife 2021
7
33

Microbial Regulation of Host Physiology by Short-chain Fatty Acids.
Bart van der Hee, Jerry M Wells. Trends Microbiol 2021
77
33

Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine.
Ken Cadwell, Khushbu K Patel, Nicole S Maloney, Ta-Chiang Liu, Aylwin C Y Ng, Chad E Storer, Richard D Head, Ramnik Xavier, Thaddeus S Stappenbeck, Herbert W Virgin. Cell 2010
635
33

Evidence that asthma is a developmental origin disease influenced by maternal diet and bacterial metabolites.
Alison N Thorburn, Craig I McKenzie, Sj Shen, Dragana Stanley, Laurence Macia, Linda J Mason, Laura K Roberts, Connie H Y Wong, Raymond Shim, Remy Robert,[...]. Nat Commun 2015
451
33

The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation.
Mario M Zaiss, Alexis Rapin, Luc Lebon, Lalit Kumar Dubey, Ilaria Mosconi, Kerstin Sarter, Alessandra Piersigilli, Laure Menin, Alan W Walker, Jacques Rougemont,[...]. Immunity 2015
235
33

Candidalysin is a fungal peptide toxin critical for mucosal infection.
David L Moyes, Duncan Wilson, Jonathan P Richardson, Selene Mogavero, Shirley X Tang, Julia Wernecke, Sarah Höfs, Remi L Gratacap, Jon Robbins, Manohursingh Runglall,[...]. Nature 2016
373
33

Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model.
Bryan B Hsu, Travis E Gibson, Vladimir Yeliseyev, Qing Liu, Lorena Lyon, Lynn Bry, Pamela A Silver, Georg K Gerber. Cell Host Microbe 2019
164
33

Debaryomyces is enriched in Crohn's disease intestinal tissue and impairs healing in mice.
Umang Jain, Aaron M Ver Heul, Shanshan Xiong, Martin H Gregory, Elora G Demers, Justin T Kern, Chin-Wen Lai, Brian D Muegge, Derek A G Barisas, J Steven Leal-Ekman,[...]. Science 2021
52
33

Organoid technologies for the study of intestinal microbiota-host interactions.
Valentina Bozzetti, Stefania Senger. Trends Mol Med 2022
1
100

How informative is the mouse for human gut microbiota research?
Thi Loan Anh Nguyen, Sara Vieira-Silva, Adrian Liston, Jeroen Raes. Dis Model Mech 2015
651
33

Defining dysbiosis and its influence on host immunity and disease.
Charisse Petersen, June L Round. Cell Microbiol 2014
396
33

Expansion of commensal fungus Wallemia mellicola in the gastrointestinal mycobiota enhances the severity of allergic airway disease in mice.
Joseph H Skalski, Jose J Limon, Purnima Sharma, Matthew D Gargus, Christopher Nguyen, Jie Tang, Ana Lucia Coelho, Cory M Hogaboam, Timothy R Crother, David M Underhill. PLoS Pathog 2018
45
33

Pathogens, microbiome and the host: emergence of the ecological Koch's postulates.
Pascale Vonaesch, Mark Anderson, Philippe J Sansonetti. FEMS Microbiol Rev 2018
52
33

Commensal-dendritic-cell interaction specifies a unique protective skin immune signature.
Shruti Naik, Nicolas Bouladoux, Jonathan L Linehan, Seong-Ji Han, Oliver J Harrison, Christoph Wilhelm, Sean Conlan, Sarah Himmelfarb, Allyson L Byrd, Clayton Deming,[...]. Nature 2015
409
33

Pathobionts of the gastrointestinal microbiota and inflammatory disease.
Janet Chow, Haiqing Tang, Sarkis K Mazmanian. Curr Opin Immunol 2011
241
33

Clostridium difficile spore biology: sporulation, germination, and spore structural proteins.
Daniel Paredes-Sabja, Aimee Shen, Joseph A Sorg. Trends Microbiol 2014
226
33

The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid-Type I IFN Signaling Axis.
Emma S Winkler, Swathi Shrihari, Barry L Hykes, Scott A Handley, Prabhakar S Andhey, Yan-Jang S Huang, Amanda Swain, Lindsay Droit, Kranthi K Chebrolu, Matthias Mack,[...]. Cell 2020
44
33

Microbial tryptophan metabolites regulate gut barrier function via the aryl hydrocarbon receptor.
Samantha A Scott, Jingjing Fu, Pamela V Chang. Proc Natl Acad Sci U S A 2020
110
33

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.
Aleksey Chudnovskiy, Arthur Mortha, Veronika Kana, Andrea Kennard, Juan David Ramirez, Adeeb Rahman, Romain Remark, Ilaria Mogno, Ruby Ng, Sasha Gnjatic,[...]. Cell 2016
153
33

Temporal Regulation of the Bacterial Metabolite Deoxycholate during Colonic Repair Is Critical for Crypt Regeneration.
Umang Jain, Chin-Wen Lai, Shanshan Xiong, Victoria M Goodwin, Qiuhe Lu, Brian D Muegge, George P Christophi, Kelli L VanDussen, Bethany P Cummings, Erick Young,[...]. Cell Host Microbe 2018
38
33

Interactions between the microbiota and the immune system.
Lora V Hooper, Dan R Littman, Andrew J Macpherson. Science 2012
33

Mining the microbiota for microbial and metabolite-based immunotherapies.
Ashwin N Skelly, Yuko Sato, Sean Kearney, Kenya Honda. Nat Rev Immunol 2019
111
33

Mucins and the Microbiome.
Gunnar C Hansson. Annu Rev Biochem 2020
50
33

Interpersonal Gut Microbiome Variation Drives Susceptibility and Resistance to Cholera Infection.
Salma Alavi, Jonathan D Mitchell, Jennifer Y Cho, Rui Liu, John C Macbeth, Ansel Hsiao. Cell 2020
44
33

Cooperating Commensals Restore Colonization Resistance to Vancomycin-Resistant Enterococcus faecium.
Silvia Caballero, Sohn Kim, Rebecca A Carter, Ingrid M Leiner, Bože Sušac, Liza Miller, Grace J Kim, Lilan Ling, Eric G Pamer. Cell Host Microbe 2017
136
33

Development of a gut microbe-targeted nonlethal therapeutic to inhibit thrombosis potential.
Adam B Roberts, Xiaodong Gu, Jennifer A Buffa, Alex G Hurd, Zeneng Wang, Weifei Zhu, Nilaksh Gupta, Sarah M Skye, David B Cody, Bruce S Levison,[...]. Nat Med 2018
230
33

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
33

Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis.
Lasha Gogokhia, Kate Buhrke, Rickesha Bell, Brenden Hoffman, D Garrett Brown, Christin Hanke-Gogokhia, Nadim J Ajami, Matthew C Wong, Arevik Ghazaryan, John F Valentine,[...]. Cell Host Microbe 2019
185
33

Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver,[...]. Nat Microbiol 2019
475
33

Immune regulation by fungal strain diversity in inflammatory bowel disease.
Xin V Li, Irina Leonardi, Gregory G Putzel, Alexa Semon, William D Fiers, Takato Kusakabe, Woan-Yu Lin, Iris H Gao, Itai Doron, Alejandra Gutierrez-Guerrero,[...]. Nature 2022
5
33

Circadian rhythms and the gut microbiota: from the metabolic syndrome to cancer.
Faraz Bishehsari, Robin M Voigt, Ali Keshavarzian. Nat Rev Endocrinol 2020
45
33

Paradigms of Lung Microbiota Functions in Health and Disease, Particularly, in Asthma.
Elliot Mathieu, Unai Escribano-Vazquez, Delphyne Descamps, Claire Cherbuy, Philippe Langella, Sabine Riffault, Aude Remot, Muriel Thomas. Front Physiol 2018
87
33


A Stem-Cell-Derived Platform Enables Complete Cryptosporidium Development In Vitro and Genetic Tractability.
Georgia Wilke, Lisa J Funkhouser-Jones, Yi Wang, Soumya Ravindran, Qiuling Wang, Wandy L Beatty, Megan T Baldridge, Kelli L VanDussen, Bang Shen, Mark S Kuhlenschmidt,[...]. Cell Host Microbe 2019
64
33

Fecal IgA Levels Are Determined by Strain-Level Differences in Bacteroides ovatus and Are Modifiable by Gut Microbiota Manipulation.
Chao Yang, Ilaria Mogno, Eduardo J Contijoch, Joshua N Borgerding, Varun Aggarwala, Zhihua Li, Sophia Siu, Emilie K Grasset, Drew S Helmus, Marla C Dubinsky,[...]. Cell Host Microbe 2020
64
33



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.