A citation-based method for searching scientific literature

Gerard Arrey, Samuel T Keating, Birgitte Regenberg. Semin Cell Dev Biol 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma.
Richard P Koche, Elias Rodriguez-Fos, Konstantin Helmsauer, Martin Burkert, Ian C MacArthur, Jesper Maag, Rocio Chamorro, Natalia Munoz-Perez, Montserrat Puiggròs, Heathcliff Dorado Garcia,[...]. Nat Genet 2020
85
100

Small extrachromosomal circular DNAs, microDNA, produce short regulatory RNAs that suppress gene expression independent of canonical promoters.
Teressa Paulsen, Yoshiyuki Shibata, Pankaj Kumar, Laura Dillon, Anindya Dutta. Nucleic Acids Res 2019
32
100

RNAi suppression of DNA methylation affects the drought stress response and genome integrity in transgenic poplar.
Mamadou D Sow, Anne-Laure Le Gac, Régis Fichot, Sophie Lanciano, Alain Delaunay, Isabelle Le Jan, Marie-Claude Lesage-Descauses, Sylvie Citerne, Jose Caius, Véronique Brunaud,[...]. New Phytol 2021
6
100

The formation and evolution of centromeric satellite repeats in Saccharum species.
Yongji Huang, Wenjie Ding, Muqing Zhang, Jinlei Han, Yanfen Jing, Wei Yao, Robert Hasterok, Zonghua Wang, Kai Wang. Plant J 2021
10
100

Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma.
Ana C deCarvalho, Hoon Kim, Laila M Poisson, Mary E Winn, Claudius Mueller, David Cherba, Julie Koeman, Sahil Seth, Alexei Protopopov, Michelle Felicella,[...]. Nat Genet 2018
116
100

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data.
Panpan Zhang, Haoran Peng, Christel Llauro, Etienne Bucher, Marie Mirouze. Front Plant Sci 2021
1
100

Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila.
Sarit Cohen, Keren Yacobi, Daniel Segal. Genome Res 2003
89
100

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.
Ales Pecinka, Huy Q Dinh, Tuncay Baubec, Marisa Rosa, Nicole Lettner, Ortrun Mittelsten Scheid. Plant Cell 2010
263
100

Extrachromosomal circular DNA is common in yeast.
Henrik D Møller, Lance Parsons, Tue S Jørgensen, David Botstein, Birgitte Regenberg. Proc Natl Acad Sci U S A 2015
107
100

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
X Lin, S Kaul, S Rounsley, T P Shea, M I Benito, C D Town, C Y Fujii, T Mason, C L Bowman, M Barnstead,[...]. Nature 1999
460
100

Classification of extrachromosomal circular DNA with a focus on the role of extrachromosomal DNA (ecDNA) in tumor heterogeneity and progression.
Zhenyu Liao, Wang Jiang, Longyun Ye, Tianjiao Li, Xianjun Yu, Liang Liu. Biochim Biophys Acta Rev Cancer 2020
24
100

A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes.
Ivana Grabundzija, Simon A Messing, Jainy Thomas, Rachel L Cosby, Ilija Bilic, Csaba Miskey, Andreas Gogol-Döring, Vladimir Kapitonov, Tanja Diem, Anna Dalda,[...]. Nat Commun 2016
44
100

Chromosome aberrations induced by zebularine in triticale.
Xuhui Ma, Qing Wang, Yanzhi Wang, Jieyun Ma, Nan Wu, Shuang Ni, Tengxiao Luo, Lifang Zhuang, Chenggen Chu, Seong-Woo Cho,[...]. Genome 2016
6
100

Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens.
Massa J Shoura, Idan Gabdank, Loren Hansen, Jason Merker, Jason Gotlib, Stephen D Levene, Andrew Z Fire. G3 (Bethesda) 2017
46
100

Deciphering extrachromosomal circular DNA in Arabidopsis.
Keyi Wang, Hui Tian, Lequn Wang, Lin Wang, Yacong Tan, Ziting Zhang, Kai Sun, Meng Yin, Qinggong Wei, Baohua Guo,[...]. Comput Struct Biotechnol J 2021
7
100

Loss of human ribosomal gene CpG methylation enhances cryptic RNA polymerase II transcription and disrupts ribosomal RNA processing.
Thérèse Gagnon-Kugler, Frédéric Langlois, Victor Stefanovsky, Frédéric Lessard, Tom Moss. Mol Cell 2009
80
100

ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data.
Ludwig Mann, Kathrin M Seibt, Beatrice Weber, Tony Heitkam. BMC Bioinformatics 2022
4
100

The non-Mendelian behavior of plant B chromosomes.
Jianyong Chen, James A Birchler, Andreas Houben. Chromosome Res 2022
1
100

Full-length sequencing of circular DNA viruses and extrachromosomal circular DNA using CIDER-Seq.
Devang Mehta, Luc Cornet, Matthias Hirsch-Hoffmann, Syed Shan-E-Ali Zaidi, Hervé Vanderschuren. Nat Protoc 2020
11
100

Genomic Copy-Number Loss Is Rescued by Self-Limiting Production of DNA Circles.
Andrés Mansisidor, Temistocles Molinar, Priyanka Srivastava, Demetri D Dartis, Adriana Pino Delgado, Hannah G Blitzblau, Hannah Klein, Andreas Hochwagen. Mol Cell 2018
32
100



Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants.
Sophie Lanciano, Marie-Christine Carpentier, Christel Llauro, Edouard Jobet, Dagmara Robakowska-Hyzorek, Eric Lasserre, Alain Ghesquière, Olivier Panaud, Marie Mirouze. PLoS Genet 2017
60
100


Genomic impact of stress-induced transposable element mobility in Arabidopsis.
David Roquis, Marta Robertson, Liang Yu, Michael Thieme, Magdalena Julkowska, Etienne Bucher. Nucleic Acids Res 2021
9
100

Diverse and mobile: eccDNA-based identification of carrot low-copy-number LTR retrotransposons active in callus cultures.
Kornelia Kwolek, Patrycja Kędzierska, Magdalena Hankiewicz, Marie Mirouze, Olivier Panaud, Dariusz Grzebelus, Alicja Macko-Podgórni. Plant J 2022
1
100

Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis.
Barbara Zellinger, Svetlana Akimcheva, Jasna Puizina, Martina Schirato, Karel Riha. Mol Cell 2007
89
100

Transcription-induced formation of extrachromosomal DNA during yeast ageing.
Ryan M Hull, Michelle King, Grazia Pizza, Felix Krueger, Xabier Vergara, Jonathan Houseley. PLoS Biol 2019
37
100


Genomic and Transcriptomic Survey Provides New Insight into the Organization and Transposition Activity of Highly Expressed LTR Retrotransposons of Sunflower (Helianthus annuus L.).
Ilya Kirov, Murad Omarov, Pavel Merkulov, Maxim Dudnikov, Sofya Gvaramiya, Elizaveta Kolganova, Roman Komakhin, Gennady Karlov, Alexander Soloviev. Int J Mol Sci 2020
6
100

Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development.
Ilya Kirov, Maxim Dudnikov, Pavel Merkulov, Andrey Shingaliev, Murad Omarov, Elizaveta Kolganova, Alexandra Sigaeva, Gennady Karlov, Alexander Soloviev. Plants (Basel) 2020
7
100

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development.
Li He, Huan Huang, Mariem Bradai, Cheng Zhao, Yin You, Jun Ma, Lun Zhao, Rosa Lozano-Durán, Jian-Kang Zhu. Nat Commun 2022
3
100

Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
Kristen M Turner, Viraj Deshpande, Doruk Beyter, Tomoyuki Koga, Jessica Rusert, Catherine Lee, Bin Li, Karen Arden, Bing Ren, David A Nathanson,[...]. Nature 2017
261
100


An extrachromosomal form of the Mu transposons of maize.
V Sundaresan, M Freeling. Proc Natl Acad Sci U S A 1987
59
100


Circular ecDNA promotes accessible chromatin and high oncogene expression.
Sihan Wu, Kristen M Turner, Nam Nguyen, Ramya Raviram, Marcella Erb, Jennifer Santini, Jens Luebeck, Utkrisht Rajkumar, Yarui Diao, Bin Li,[...]. Nature 2019
140
100

DNA methylation as a system of plant genomic immunity.
M Yvonne Kim, Daniel Zilberman. Trends Plant Sci 2014
118
100

Remarkable variation of ribosomal DNA organization and copy number in gnetophytes, a distinct lineage of gymnosperms.
Wencai Wang, Tao Wan, Hannes Becher, Alena Kuderova, Ilia J Leitch, Sònia Garcia, Andrew R Leitch, Aleš Kovařík. Ann Bot 2019
12
100

Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.
Bastian Joffroy, Yavuz O Uca, Domen Prešern, Jonathan P K Doye, Thorsten L Schmidt. Nucleic Acids Res 2018
23
100

Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding.
Michael Thieme, Sophie Lanciano, Sandrine Balzergue, Nicolas Daccord, Marie Mirouze, Etienne Bucher. Genome Biol 2017
40
100

Survey of extrachromosomal circular DNA derived from plant satellite repeats.
Alice Navrátilová, Andrea Koblízková, Jirí Macas. BMC Plant Biol 2008
62
100

Retrotransposon suicide: formation of Ty1 circles and autointegration via a central DNA flap.
David J Garfinkel, Karen M Stefanisko, Katherine M Nyswaner, Sharon P Moore, Jangsuk Oh, Stephen H Hughes. J Virol 2006
18
100


Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome.
Peter D Fields, Gus Waneka, Matthew Naish, Michael C Schatz, Ian R Henderson, Daniel B Sloan. Genome Biol Evol 2022
1
100

Extrachromosomal DNA: An Emerging Hallmark in Human Cancer.
Sihan Wu, Vineet Bafna, Howard Y Chang, Paul S Mischel. Annu Rev Pathol 2022
8
100

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
David J Bertioli, Jerry Jenkins, Josh Clevenger, Olga Dudchenko, Dongying Gao, Guillermo Seijo, Soraya C M Leal-Bertioli, Longhui Ren, Andrew D Farmer, Manish K Pandey,[...]. Nat Genet 2019
171
100

Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
Jinfeng Chen, Lu Lu, Sofia M C Robb, Matthew Collin, Yutaka Okumoto, Jason E Stajich, Susan R Wessler. Proc Natl Acad Sci U S A 2020
6
100


Circular DNA elements of chromosomal origin are common in healthy human somatic tissue.
Henrik Devitt Møller, Marghoob Mohiyuddin, Iñigo Prada-Luengo, M Reza Sailani, Jens Frey Halling, Peter Plomgaard, Lasse Maretty, Anders Johannes Hansen, Michael P Snyder, Henriette Pilegaard,[...]. Nat Commun 2018
99
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.