A citation-based method for searching scientific literature

Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D D'Agostino, Minghao Zhang, Eunha Kim, Eric A Franzosa, Julian Avila-Pacheco, Jordan E Bisanz, Christopher K Rakowski, Hera Vlamakis, Ramnik J Xavier, Peter J Turnbaugh, Randy S Longman, Michael R Krout, Clary B Clish, Fraydoon Rastinejad, Curtis Huttenhower, Jun R Huh, A Sloan Devlin. Nature 2022
Times Cited: 11







List of co-cited articles
72 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Microbial bile acid metabolites modulate gut RORγ+ regulatory T cell homeostasis.
Xinyang Song, Ximei Sun, Sungwhan F Oh, Meng Wu, Yanbo Zhang, Wen Zheng, Naama Geva-Zatorsky, Ray Jupp, Diane Mathis, Christophe Benoist,[...]. Nature 2020
268
36

Microbiota-Derived Short-Chain Fatty Acids Promote the Memory Potential of Antigen-Activated CD8+ T Cells.
Annabell Bachem, Christina Makhlouf, Katrina J Binger, David P de Souza, Deidra Tull, Katharina Hochheiser, Paul G Whitney, Daniel Fernandez-Ruiz, Sabrina Dähling, Wolfgang Kastenmüller,[...]. Immunity 2019
180
36

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation.
Nicholas Arpaia, Clarissa Campbell, Xiying Fan, Stanislav Dikiy, Joris van der Veeken, Paul deRoos, Hui Liu, Justin R Cross, Klaus Pfeffer, Paul J Coffer,[...]. Nature 2013
27

Bile acid metabolites control TH17 and Treg cell differentiation.
Saiyu Hang, Donggi Paik, Lina Yao, Eunha Kim, Jamma Trinath, Jingping Lu, Soyoung Ha, Brandon N Nelson, Samantha P Kelly, Lin Wu,[...]. Nature 2019
296
27

A defined commensal consortium elicits CD8 T cells and anti-cancer immunity.
Takeshi Tanoue, Satoru Morita, Damian R Plichta, Ashwin N Skelly, Wataru Suda, Yuki Sugiura, Seiko Narushima, Hera Vlamakis, Iori Motoo, Kayoko Sugita,[...]. Nature 2019
407
27

The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis.
Patrick M Smith, Michael R Howitt, Nicolai Panikov, Monia Michaud, Carey Ann Gallini, Mohammad Bohlooly-Y, Jonathan N Glickman, Wendy S Garrett. Science 2013
27

Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism.
Annika Wahlström, Sama I Sayin, Hanns-Ulrich Marschall, Fredrik Bäckhed. Cell Metab 2016
968
27

A biosynthetic pathway for a prominent class of microbiota-derived bile acids.
A Sloan Devlin, Michael A Fischbach. Nat Chem Biol 2015
164
27

Microbiome-derived inosine modulates response to checkpoint inhibitor immunotherapy.
Lukas F Mager, Regula Burkhard, Nicola Pett, Noah C A Cooke, Kirsty Brown, Hena Ramay, Seungil Paik, John Stagg, Ryan A Groves, Marco Gallo,[...]. Science 2020
231
27

The Diversity of Gut Microbiome is Associated With Favorable Responses to Anti-Programmed Death 1 Immunotherapy in Chinese Patients With NSCLC.
Yueping Jin, Hui Dong, Liliang Xia, Yi Yang, Yongqiang Zhu, Yan Shen, Huajun Zheng, Chengcheng Yao, Ying Wang, Shun Lu. J Thorac Oncol 2019
157
27

Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients.
Diwakar Davar, Amiran K Dzutsev, John A McCulloch, Richard R Rodrigues, Joe-Marc Chauvin, Robert M Morrison, Richelle N Deblasio, Carmine Menna, Quanquan Ding, Ornella Pagliano,[...]. Science 2021
219
27

Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients.
Erez N Baruch, Ilan Youngster, Guy Ben-Betzalel, Rona Ortenberg, Adi Lahat, Lior Katz, Katerina Adler, Daniela Dick-Necula, Stephen Raskin, Naamah Bloch,[...]. Science 2021
245
27

Gut microbial metabolites facilitate anticancer therapy efficacy by modulating cytotoxic CD8+ T cell immunity.
Yao He, Liuhui Fu, Yiping Li, Wenyan Wang, Mingli Gong, Jing Zhang, Xin Dong, Jiaoyan Huang, Quanbo Wang, Charles R Mackay,[...]. Cell Metab 2021
51
27

Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota.
Marie Vétizou, Jonathan M Pitt, Romain Daillère, Patricia Lepage, Nadine Waldschmitt, Caroline Flament, Sylvie Rusakiewicz, Bertrand Routy, Maria P Roberti, Connie P M Duong,[...]. Science 2015
27

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.
Ayelet Sivan, Leticia Corrales, Nathaniel Hubert, Jason B Williams, Keston Aquino-Michaels, Zachary M Earley, Franco W Benyamin, Yuk Man Lei, Bana Jabri, Maria-Luisa Alegre,[...]. Science 2015
27

Association of Short-Chain Fatty Acids in the Gut Microbiome With Clinical Response to Treatment With Nivolumab or Pembrolizumab in Patients With Solid Cancer Tumors.
Motoo Nomura, Ryosuke Nagatomo, Keitaro Doi, Juko Shimizu, Kiichiro Baba, Tomoki Saito, Shigemi Matsumoto, Koichi Inoue, Manabu Muto. JAMA Netw Open 2020
75
27

Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients.
V Gopalakrishnan, C N Spencer, L Nezi, A Reuben, M C Andrews, T V Karpinets, P A Prieto, D Vicente, K Hoffman, S C Wei,[...]. Science 2018
27

Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist.
Sama I Sayin, Annika Wahlström, Jenny Felin, Sirkku Jäntti, Hanns-Ulrich Marschall, Krister Bamberg, Bo Angelin, Tuulia Hyötyläinen, Matej Orešič, Fredrik Bäckhed. Cell Metab 2013
27

Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis.
Nagendra Singh, Ashish Gurav, Sathish Sivaprakasam, Evan Brady, Ravi Padia, Huidong Shi, Muthusamy Thangaraju, Puttur D Prasad, Santhakumar Manicassamy, David H Munn,[...]. Immunity 2014
18

Bacterial metabolism of bile acids promotes generation of peripheral regulatory T cells.
Clarissa Campbell, Peter T McKenney, Daniel Konstantinovsky, Olga I Isaeva, Michail Schizas, Jacob Verter, Cheryl Mai, Wen-Bing Jin, Chun-Jun Guo, Sara Violante,[...]. Nature 2020
164
18

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
18

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn,[...]. Nature 2019
750
18

Bifidobacterium alters the gut microbiota and modulates the functional metabolism of T regulatory cells in the context of immune checkpoint blockade.
Shan Sun, Lingjie Luo, Wenhua Liang, Qian Yin, Jing Guo, Anthony M Rush, Zhibao Lv, Qiming Liang, Michael A Fischbach, Justin L Sonnenburg,[...]. Proc Natl Acad Sci U S A 2020
39
18

Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians.
Yuko Sato, Koji Atarashi, Damian R Plichta, Yasumichi Arai, Satoshi Sasajima, Sean M Kearney, Wataru Suda, Kozue Takeshita, Takahiro Sasaki, Shoki Okamoto,[...]. Nature 2021
54
18

Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells.
Koji Atarashi, Takeshi Tanoue, Minoru Ando, Nobuhiko Kamada, Yuji Nagano, Seiko Narushima, Wataru Suda, Akemi Imaoka, Hiromi Setoyama, Takashi Nagamori,[...]. Cell 2015
572
18

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota.
Koji Atarashi, Takeshi Tanoue, Kenshiro Oshima, Wataru Suda, Yuji Nagano, Hiroyoshi Nishikawa, Shinji Fukuda, Takuro Saito, Seiko Narushima, Koji Hase,[...]. Nature 2013
18

The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon.
Dallas R Donohoe, Nikhil Garge, Xinxin Zhang, Wei Sun, Thomas M O'Connell, Maureen K Bunger, Scott J Bultman. Cell Metab 2011
885
18

Lactobacillus reuteri induces gut intraepithelial CD4+CD8αα+ T cells.
Luisa Cervantes-Barragan, Jiani N Chai, Ma Diarey Tianero, Blanda Di Luccia, Philip P Ahern, Joseph Merriman, Victor S Cortez, Michael G Caparon, Mohamed S Donia, Susan Gilfillan,[...]. Science 2017
301
18

Dietary Fiber Confers Protection against Flu by Shaping Ly6c- Patrolling Monocyte Hematopoiesis and CD8+ T Cell Metabolism.
Aurélien Trompette, Eva S Gollwitzer, Céline Pattaroni, Isabel C Lopez-Mejia, Erika Riva, Julie Pernot, Niki Ubags, Lluis Fajas, Laurent P Nicod, Benjamin J Marsland. Immunity 2018
247
18

Targeting Adenosine in Cancer Immunotherapy to Enhance T-Cell Function.
Selena Vigano, Dimitrios Alatzoglou, Melita Irving, Christine Ménétrier-Caux, Christophe Caux, Pedro Romero, George Coukos. Front Immunol 2019
166
18

Inosine is an alternative carbon source for CD8+-T-cell function under glucose restriction.
Tingting Wang, J N Rashida Gnanaprakasam, Xuyong Chen, Siwen Kang, Xuequn Xu, Hua Sun, Lingling Liu, Hayley Rodgers, Ethan Miller, Teresa A Cassel,[...]. Nat Metab 2020
48
18

Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response.
Christine N Spencer, Jennifer L McQuade, Vancheswaran Gopalakrishnan, John A McCulloch, Marie Vetizou, Alexandria P Cogdill, Md A Wadud Khan, Xiaotao Zhang, Michael G White, Christine B Peterson,[...]. Science 2021
44
18

The Influence of the Gut Microbiome on Cancer, Immunity, and Cancer Immunotherapy.
Vancheswaran Gopalakrishnan, Beth A Helmink, Christine N Spencer, Alexandre Reuben, Jennifer A Wargo. Cancer Cell 2018
467
18

The Gut Microbiome Is Associated with Clinical Response to Anti-PD-1/PD-L1 Immunotherapy in Gastrointestinal Cancer.
Zhi Peng, Siyuan Cheng, Yan Kou, Ziqi Wang, Rong Jin, Han Hu, Xiaotian Zhang, Ji-Fang Gong, Jian Li, Ming Lu,[...]. Cancer Immunol Res 2020
46
18

Microbial short-chain fatty acids modulate CD8+ T cell responses and improve adoptive immunotherapy for cancer.
Maik Luu, Zeno Riester, Adrian Baldrich, Nicole Reichardt, Samantha Yuille, Alessandro Busetti, Matthias Klein, Anne Wempe, Hanna Leister, Hartmann Raifer,[...]. Nat Commun 2021
37
18

Regulation of the effector function of CD8+ T cells by gut microbiota-derived metabolite butyrate.
Maik Luu, Katharina Weigand, Fatana Wedi, Carina Breidenbend, Hanna Leister, Sabine Pautz, Till Adhikary, Alexander Visekruna. Sci Rep 2018
101
18

Resetting microbiota by Lactobacillus reuteri inhibits T reg deficiency-induced autoimmunity via adenosine A2A receptors.
Baokun He, Thomas K Hoang, Ting Wang, Michael Ferris, Christopher M Taylor, Xiangjun Tian, Meng Luo, Dat Q Tran, Jain Zhou, Nina Tatevian,[...]. J Exp Med 2017
79
18

Gut Microbial Metabolites Fuel Host Antibody Responses.
Myunghoo Kim, Yaqing Qie, Jeongho Park, Chang H Kim. Cell Host Microbe 2016
334
18

Review: microbial transformations of human bile acids.
Douglas V Guzior, Robert A Quinn. Microbiome 2021
37
18

Systemic short chain fatty acids limit antitumor effect of CTLA-4 blockade in hosts with cancer.
Clélia Coutzac, Jean-Mehdi Jouniaux, Angelo Paci, Julien Schmidt, Domenico Mallardo, Atmane Seck, Vahe Asvatourian, Lydie Cassard, Patrick Saulnier, Ludovic Lacroix,[...]. Nat Commun 2020
101
18

Gut microbiome-mediated bile acid metabolism regulates liver cancer via NKT cells.
Chi Ma, Miaojun Han, Bernd Heinrich, Qiong Fu, Qianfei Zhang, Milan Sandhu, David Agdashian, Masaki Terabe, Jay A Berzofsky, Valerie Fako,[...]. Science 2018
500
18


Metabolic modulation of tumours with engineered bacteria for immunotherapy.
Fernando P Canale, Camilla Basso, Gaia Antonini, Michela Perotti, Ning Li, Anna Sokolovska, Julia Neumann, Michael J James, Stefania Geiger, Wenjie Jin,[...]. Nature 2021
26
18

Gut Bacteria Composition Drives Primary Resistance to Cancer Immunotherapy in Renal Cell Carcinoma Patients.
Lisa Derosa, Bertrand Routy, Marine Fidelle, Valerio Iebba, Laurie Alla, Edoardo Pasolli, Nicola Segata, Aude Desnoyer, Filippo Pietrantonio, Gladys Ferrere,[...]. Eur Urol 2020
78
18

The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients.
Vyara Matson, Jessica Fessler, Riyue Bao, Tara Chongsuwat, Yuanyuan Zha, Maria-Luisa Alegre, Jason J Luke, Thomas F Gajewski. Science 2018
18


Intratumoral accumulation of gut microbiota facilitates CD47-based immunotherapy via STING signaling.
Yaoyao Shi, Wenxin Zheng, Kaiting Yang, Katharine G Harris, Kaiyuan Ni, Lai Xue, Wenbin Lin, Eugene B Chang, Ralph R Weichselbaum, Yang-Xin Fu. J Exp Med 2020
68
18

Microbiota triggers STING-type I IFN-dependent monocyte reprogramming of the tumor microenvironment.
Khiem C Lam, Romina E Araya, April Huang, Quanyi Chen, Martina Di Modica, Richard R Rodrigues, Amélie Lopès, Sarah B Johnson, Benjamin Schwarz, Eric Bohrnsen,[...]. Cell 2021
38
18

Baseline gut microbiota predicts clinical response and colitis in metastatic melanoma patients treated with ipilimumab.
N Chaput, P Lepage, C Coutzac, E Soularue, K Le Roux, C Monot, L Boselli, E Routier, L Cassard, M Collins,[...]. Ann Oncol 2017
526
18

Enterococcus peptidoglycan remodeling promotes checkpoint inhibitor cancer immunotherapy.
Matthew E Griffin, Juliel Espinosa, Jessica L Becker, Ji-Dung Luo, Thomas S Carroll, Jyoti K Jha, Gary R Fanger, Howard C Hang. Science 2021
27
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.