A citation-based method for searching scientific literature

Benjamin Ober-Reynolds, Winston R Becker, Karina Jouravleva, Samson M Jolly, Phillip D Zamore, William J Greenleaf. Mol Cell 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA-protein interactions: methods for detection and analysis.
Bipasha Dey, Sameer Thukral, Shruti Krishnan, Mainak Chakrobarty, Sahil Gupta, Chanchal Manghani, Vibha Rani. Mol Cell Biochem 2012
77
100

Genetically Encoded Protein Phosphorylation in Mammalian Cells.
Václav Beránek, Christopher D Reinkemeier, Michael S Zhang, Alexandria D Liang, Gene Kym, Jason W Chin. Cell Chem Biol 2018
33
100

DNB-based on-chip motif finding: A high-throughput method to profile different types of protein-DNA interactions.
Zhuokun Li, Xiaojue Wang, Dongyang Xu, Dengwei Zhang, Dan Wang, Xuechen Dai, Qi Wang, Zhou Li, Ying Gu, Wenjie Ouyang,[...]. Sci Adv 2020
1
100


MspA nanopore as a single-molecule tool: From sequencing to SPRNT.
Andrew H Laszlo, Ian M Derrington, Jens H Gundlach. Methods 2016
36
100

Automated Design of Diverse Stand-Alone Riboswitches.
Michelle J Wu, Johan O L Andreasson, Wipapat Kladwang, William Greenleaf, Rhiju Das. ACS Synth Biol 2019
19
100

Single-molecule imaging of DNA curtains reveals mechanisms of KOPS sequence targeting by the DNA translocase FtsK.
Ja Yil Lee, Ilya J Finkelstein, Estelle Crozat, David J Sherratt, Eric C Greene. Proc Natl Acad Sci U S A 2012
44
100

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.
Radoje Drmanac, Andrew B Sparks, Matthew J Callow, Aaron L Halpern, Norman L Burns, Bahram G Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B Nilsen, George Yeung,[...]. Science 2010
781
100

Methods and Applications of In Silico Aptamer Design and Modeling.
Andrey A Buglak, Alexey V Samokhvalov, Anatoly V Zherdev, Boris B Dzantiev. Int J Mol Sci 2020
27
100

Peptide Synthesis on a Next-Generation DNA Sequencing Platform.
Nina Svensen, Olve B Peersen, Samie R Jaffrey. Chembiochem 2016
10
100

Encoding Multiple Virtual Signals in DNA Barcodes with Single-Molecule FRET.
Sung Hyun Kim, Hyunwoo Kim, Hawoong Jeong, Tae-Young Yoon. Nano Lett 2021
6
100

Comprehensive sequence-to-function mapping of cofactor-dependent RNA catalysis in the glmS ribozyme.
Johan O L Andreasson, Andrew Savinov, Steven M Block, William J Greenleaf. Nat Commun 2020
7
100

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches.
Johan O L Andreasson, Michael R Gotrik, Michelle J Wu, Hannah K Wayment-Steele, Wipapat Kladwang, Fernando Portela, Roger Wellington-Oguri, Rhiju Das, William J Greenleaf. Proc Natl Acad Sci U S A 2022
2
100

Biosynthesis of proteins containing modified lysines and fluorescent labels using non-natural amino acid mutagenesis.
Yasunori Tokuda, Takayoshi Watanabe, Kazushi Horiike, Kaori Shiraga, Ryoji Abe, Norihito Muranaka, Takahiro Hohsaka. J Biosci Bioeng 2011
6
100

Single-molecule biophysics: at the interface of biology, physics and chemistry.
Ashok A Deniz, Samrat Mukhopadhyay, Edward A Lemke. J R Soc Interface 2008
157
100

Genome sequencing in microfabricated high-density picolitre reactors.
Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen,[...]. Nature 2005
100

Multiplex Single-Molecule DNA Barcoding Using an Oligonucleotide Ligation Assay.
Ivo Severins, Malwina Szczepaniak, Chirlmin Joo. Biophys J 2018
5
100

Post-transcriptional gene regulation by mRNA modifications.
Boxuan Simen Zhao, Ian A Roundtree, Chuan He. Nat Rev Mol Cell Biol 2017
892
100

A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins.
Inga Jarmoskaite, Sarah K Denny, Pavanapuresan P Vaidyanathan, Winston R Becker, Johan O L Andreasson, Curtis J Layton, Kalli Kappel, Varun Shivashankar, Raashi Sreenivasan, Rhiju Das,[...]. Mol Cell 2019
22
100

Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling.
Jacob M Tome, Abdullah Ozer, John M Pagano, Dan Gheba, Gary P Schroth, John T Lis. Nat Methods 2014
81
100

High-throughput single-molecule optofluidic analysis.
Soohong Kim, Aaron M Streets, Ron R Lin, Stephen R Quake, Shimon Weiss, Devdoot S Majumdar. Nat Methods 2011
56
100

Real-time DNA sequencing from single polymerase molecules.
John Eid, Adrian Fehr, Jeremy Gray, Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman,[...]. Science 2009
100

How to measure and evaluate binding affinities.
Inga Jarmoskaite, Ishraq AlSadhan, Pavanapuresan P Vaidyanathan, Daniel Herschlag. Elife 2020
59
100


Top-down machine learning approach for high-throughput single-molecule analysis.
David S White, Marcel P Goldschen-Ohm, Randall H Goldsmith, Baron Chanda. Elife 2020
16
100

Redesigning the Genetic Polymers of Life.
John C Chaput. Acc Chem Res 2021
8
100

Double Mutant Cycles as a Tool to Address Folding, Binding, and Allostery.
Livia Pagano, Angelo Toto, Francesca Malagrinò, Lorenzo Visconti, Per Jemth, Stefano Gianni. Int J Mol Sci 2021
4
100


Synthetic genetic polymers capable of heredity and evolution.
Vitor B Pinheiro, Alexander I Taylor, Christopher Cozens, Mikhail Abramov, Marleen Renders, Su Zhang, John C Chaput, Jesper Wengel, Sew-Yeu Peak-Chew, Stephen H McLaughlin,[...]. Science 2012
387
100

Next generation sequencing technology: Advances and applications.
H P J Buermans, J T den Dunnen. Biochim Biophys Acta 2014
292
100


'Single molecule': theory and experiments, an introduction.
Daniel Riveline. J Nanobiotechnology 2013
3
100

A Short Chemically Modified dsRNA-Binding PNA (dbPNA) Inhibits Influenza Viral Replication by Targeting Viral RNA Panhandle Structure.
Julita Kesy, Kiran M Patil, Subaschandrabose Rajesh Kumar, Zhiyu Shu, Hui Yee Yong, Louis Zimmermann, Alan Ann Lerk Ong, Desiree-Faye Kaixin Toh, Manchugondanahalli S Krishna, Lixia Yang,[...]. Bioconjug Chem 2019
27
100

Incorporation of glycosylated amino acid into protein by an in vitro translation system.
Teruhiko Matsubara, Kazutoshi Iijima, Takayoshi Watanabe, Takahiro Hohsaka, Toshinori Sato. Bioorg Med Chem Lett 2013
7
100

The more the merrier: high-throughput single-molecule techniques.
Flynn R Hill, Enrico Monachino, Antoine M van Oijen. Biochem Soc Trans 2017
9
100

Single-molecule techniques for drug discovery.
Gary M Skinner, Koen Visscher. Assay Drug Dev Technol 2004
10
100

Single-molecule analysis of DNA-protein complexes using nanopores.
Breton Hornblower, Amy Coombs, Richard D Whitaker, Anatoly Kolomeisky, Stephen J Picone, Amit Meller, Mark Akeson. Nat Methods 2007
200
100


High-Throughput Analysis Reveals Rules for Target RNA Binding and Cleavage by AGO2.
Winston R Becker, Benjamin Ober-Reynolds, Karina Jouravleva, Samson M Jolly, Phillip D Zamore, William J Greenleaf. Mol Cell 2019
43
100

Quantitative assessment of RNA-protein interactions with high-throughput sequencing-RNA affinity profiling.
Abdullah Ozer, Jacob M Tome, Robin C Friedman, Dan Gheba, Gary P Schroth, John T Lis. Nat Protoc 2015
12
100

Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation.
Joseph D Yesselman, Sarah K Denny, Namita Bisaria, Daniel Herschlag, William J Greenleaf, Rhiju Das. Proc Natl Acad Sci U S A 2019
17
100

Revealing evolutionary pathways by fitness landscape reconstruction.
Manjunatha Kogenaru, Marjon G J de Vos, Sander J Tans. Crit Rev Biochem Mol Biol 2009
23
100

Learning from Nature to Expand the Genetic Code.
Enric Ros, Adrian Gabriel Torres, Lluís Ribas de Pouplana. Trends Biotechnol 2021
5
100

Single molecule high-throughput footprinting of small and large DNA ligands.
Maria Manosas, Joan Camunas-Soler, Vincent Croquette, Felix Ritort. Nat Commun 2017
22
100

FRETboard: Semisupervised classification of FRET traces.
Carlos Victor de Lannoy, Mike Filius, Sung Hyun Kim, Chirlmin Joo, Dick de Ridder. Biophys J 2021
2
100

Long fragments achieve lower base quality in Illumina paired-end sequencing.
Ge Tan, Lennart Opitz, Ralph Schlapbach, Hubert Rehrauer. Sci Rep 2019
34
100

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.
Jason D Buenrostro, Carlos L Araya, Lauren M Chircus, Curtis J Layton, Howard Y Chang, Michael P Snyder, William J Greenleaf. Nat Biotechnol 2014
131
100

Sequence specificity in DNA binding is mainly governed by association.
Emil Marklund, Guanzhong Mao, Jinwen Yuan, Spartak Zikrin, Eldar Abdurakhmanov, Sebastian Deindl, Johan Elf. Science 2022
1
100

An in vitro translation, selection and amplification system for peptide nucleic acids.
Yevgeny Brudno, Michael E Birnbaum, Ralph E Kleiner, David R Liu. Nat Chem Biol 2010
57
100



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.