A citation-based method for searching scientific literature

Fiorella Calabrese, Francesca Lunardi, Veronica Tauro, Federica Pezzuto, Francesco Fortarezza, Luca Vedovelli, Eleonora Faccioli, Elisabetta Balestro, Marco Schiavon, Giovanni Esposito, Stefania Edith Vuljan, Chiara Giraudo, Dario Gregori, Federico Rea, Paolo Spagnolo. Int J Mol Sci 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Bimodal fibrosis in a novel mouse model of bleomycin-induced usual interstitial pneumonia.
Yoko Miura, Maggie Lam, Jane E Bourke, Satoshi Kanazawa. Life Sci Alliance 2021
2
100

A Subpopulation of Synovial Fibroblasts Leads to Osteochondrogenesis in a Mouse Model of Chronic Inflammatory Rheumatoid Arthritis.
Yoko Miura, Shusuke Ota, Matija Peterlin, Grete McDevitt, Satoshi Kanazawa. JBMR Plus 2019
10
100

A phase 3 trial of pirfenidone in patients with idiopathic pulmonary fibrosis.
Talmadge E King, Williamson Z Bradford, Socorro Castro-Bernardini, Elizabeth A Fagan, Ian Glaspole, Marilyn K Glassberg, Eduard Gorina, Peter M Hopkins, David Kardatzke, Lisa Lancaster,[...]. N Engl J Med 2014
100

Cardiovascular safety of nintedanib in subgroups by cardiovascular risk at baseline in the TOMORROW and INPULSIS trials.
Imre Noth, Marlies Wijsenbeek, Martin Kolb, Francesco Bonella, Lizette Moros, Daniel Wachtlin, Tamera J Corte. Eur Respir J 2019
17
100

MUC5B Promoter Variant and Rheumatoid Arthritis with Interstitial Lung Disease.
Pierre-Antoine Juge, Joyce S Lee, Esther Ebstein, Hiroshi Furukawa, Evgenia Dobrinskikh, Steven Gazal, Caroline Kannengiesser, Sébastien Ottaviani, Shomi Oka, Shigeto Tohma,[...]. N Engl J Med 2018
173
100

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
100

Cardiovascular safety of the tyrosine kinase inhibitor nintedanib.
Pietro Ameri, Giacomo Tini, Paolo Spallarossa, Valentina Mercurio, Carlo Gabriele Tocchetti, Italo Porto. Br J Clin Pharmacol 2021
1
100

Effects of Nintedanib in an Animal Model of Liver Fibrosis.
Lutz Wollin, Dieudonnée Togbe, Bernhard Ryffel. Biomed Res Int 2020
9
100

Heat shock protein 70 protects against bleomycin-induced pulmonary fibrosis in mice.
Ken-Ichiro Tanaka, Yuta Tanaka, Takushi Namba, Arata Azuma, Tohru Mizushima. Biochem Pharmacol 2010
59
100

Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis.
Arun C Habermann, Austin J Gutierrez, Linh T Bui, Stephanie L Yahn, Nichelle I Winters, Carla L Calvi, Lance Peter, Mei-I Chung, Chase J Taylor, Christopher Jetter,[...]. Sci Adv 2020
186
100


Antifibrotic and anti-inflammatory activity of the tyrosine kinase inhibitor nintedanib in experimental models of lung fibrosis.
Lutz Wollin, Isabelle Maillet, Valérie Quesniaux, Alexander Holweg, Bernhard Ryffel. J Pharmacol Exp Ther 2014
337
100

Significance of BMPR2 mutations in pulmonary arterial hypertension.
Bintang Tatius, Widya Wasityastuti, Fajar Dwi Astarini, Dwi Aris Agung Nugrahaningsih. Respir Investig 2021
3
100

Differential expression of Rfx1-4 during mouse spermatogenesis.
W Stephen Kistler, Gary C Horvath, Anindya Dasgupta, Malathi K Kistler. Gene Expr Patterns 2009
21
100

Efficacy and safety of nintedanib in idiopathic pulmonary fibrosis.
Luca Richeldi, Roland M du Bois, Ganesh Raghu, Arata Azuma, Kevin K Brown, Ulrich Costabel, Vincent Cottin, Kevin R Flaherty, David M Hansell, Yoshikazu Inoue,[...]. N Engl J Med 2014
100

Nintedanib for Systemic Sclerosis-Associated Interstitial Lung Disease.
Oliver Distler, Kristin B Highland, Martina Gahlemann, Arata Azuma, Aryeh Fischer, Maureen D Mayes, Ganesh Raghu, Wiebke Sauter, Mannaig Girard, Margarida Alves,[...]. N Engl J Med 2019
498
100

Nintedanib decreases muscle fibrosis and improves muscle function in a murine model of dystrophinopathy.
Patricia Piñol-Jurado, Xavier Suárez-Calvet, Esther Fernández-Simón, Eduard Gallardo, Natalia de la Oliva, Anna Martínez-Muriana, Pedro Gómez-Gálvez, Luis M Escudero, María Pérez-Peiró, Lutz Wollin,[...]. Cell Death Dis 2018
16
100

BPIFB1 (LPLUNC1) is upregulated in cystic fibrosis lung disease.
Lynne Bingle, Kirsty Wilson, Maslinda Musa, Bianca Araujo, Doris Rassl, William A Wallace, Elizabeth E LeClair, Thais Mauad, Zhe Zhou, Marcus A Mall,[...]. Histochem Cell Biol 2012
22
100


The genes for MHC class II regulatory factors RFX1 and RFX2 are located on the short arm of chromosome 19.
L Pugliatti, J Derré, R Berger, C Ucla, W Reith, B Mach. Genomics 1992
10
100

Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline.
Ganesh Raghu, Martine Remy-Jardin, Jeffrey L Myers, Luca Richeldi, Christopher J Ryerson, David J Lederer, Juergen Behr, Vincent Cottin, Sonye K Danoff, Ferran Morell,[...]. Am J Respir Crit Care Med 2018
100


TopHat: discovering splice junctions with RNA-Seq.
Cole Trapnell, Lior Pachter, Steven L Salzberg. Bioinformatics 2009
100

Secretory Immunoglobulin A Immunity in Chronic Obstructive Respiratory Diseases.
Charlotte de Fays, François M Carlier, Sophie Gohy, Charles Pilette. Cells 2022
1
100

Nintedanib ameliorates experimental pulmonary arterial hypertension via inhibition of endothelial mesenchymal transition and smooth muscle cell proliferation.
Takeo Tsutsumi, Tetsutaro Nagaoka, Takashi Yoshida, Lei Wang, Sachiko Kuriyama, Yoshifumi Suzuki, Yuichi Nagata, Norihiro Harada, Yuzo Kodama, Fumiyuki Takahashi,[...]. PLoS One 2019
22
100

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
100

Interplay of RFX transcription factors 1, 2 and 3 in motile ciliogenesis.
Sylvain Lemeille, Marie Paschaki, Dominique Baas, Laurette Morlé, Jean-Luc Duteyrat, Aouatef Ait-Lounis, Emmanuèle Barras, Fabien Soulavie, Julie Jerber, Joëlle Thomas,[...]. Nucleic Acids Res 2020
9
100

Macrophage bone morphogenic protein receptor 2 depletion in idiopathic pulmonary fibrosis and Group III pulmonary hypertension.
Ning-Yuan Chen, Scott D Collum, Fayong Luo, Tingting Weng, Thuy-Trahn Le, Adriana M Hernandez, Kemly Philip, Jose G Molina, Luis J Garcia-Morales, Yanna Cao,[...]. Am J Physiol Lung Cell Mol Physiol 2016
40
100

DDBJ new system and service refactoring.
Osamu Ogasawara, Jun Mashima, Yuichi Kodama, Eli Kaminuma, Yasukazu Nakamura, Kousaku Okubo, Toshihisa Takagi. Nucleic Acids Res 2013
25
100

Nintedanib in Progressive Fibrosing Interstitial Lung Diseases.
Kevin R Flaherty, Athol U Wells, Vincent Cottin, Anand Devaraj, Simon L F Walsh, Yoshikazu Inoue, Luca Richeldi, Martin Kolb, Kay Tetzlaff, Susanne Stowasser,[...]. N Engl J Med 2019
579
100

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
100

Transcriptomic evidence of immune activation in macroscopically normal-appearing and scarred lung tissues in idiopathic pulmonary fibrosis.
Irina G Luzina, Mariah V Salcedo, Mónica L Rojas-Peña, Anne E Wyman, Jeffrey R Galvin, Ashutosh Sachdeva, Andrew Clerman, June Kim, Teri J Franks, Edward J Britt,[...]. Cell Immunol 2018
29
100

Gene Expression Networks in the Murine Pulmonary Myocardium Provide Insight into the Pathobiology of Atrial Fibrillation.
Jordan K Boutilier, Rhonda L Taylor, Tracy Mann, Elyshia McNamara, Gary J Hoffman, Jacob Kenny, Rodney J Dilley, Peter Henry, Grant Morahan, Nigel G Laing,[...]. G3 (Bethesda) 2017
4
100

Defining the Activated Fibroblast Population in Lung Fibrosis Using Single-Cell Sequencing.
Rebecca Peyser, Scott MacDonnell, Yinglin Gao, Luis Cheng, Yong Kim, Theodore Kaplan, Qin Ruan, Yi Wei, Min Ni, Christina Adler,[...]. Am J Respir Cell Mol Biol 2019
67
100

Locations of human and mouse genes encoding the RFX1 and RFX2 transcription factor proteins.
J Doyle, S Hoffman, C Ucla, W Reith, B Mach, L Stubbs. Genomics 1996
17
100

Bioinformatic analysis of next‑generation sequencing data to identify dysregulated genes in fibroblasts of idiopathic pulmonary fibrosis.
Chau-Chyun Sheu, Wei-An Chang, Ming-Ju Tsai, Ssu-Hui Liao, Inn-Wen Chong, Po-Lin Kuo. Int J Mol Med 2019
11
100

Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.
Tasha E Fingerlin, Elissa Murphy, Weiming Zhang, Anna L Peljto, Kevin K Brown, Mark P Steele, James E Loyd, Gregory P Cosgrove, David Lynch, Steve Groshong,[...]. Nat Genet 2013
452
100

Ciliogenic RFX transcription factors regulate FGF1 gene promoter.
Yi-Chao Hsu, Chien-Yu Kao, Yu-Fen Chung, Mei-Shu Chen, Ing-Ming Chiu. J Cell Biochem 2012
9
100

Intracellular Heat Shock Protein 70 Deficiency in Pulmonary Fibrosis.
Jacobo Sellares, Kristen L Veraldi, Katelynn J Thiel, Nayra Cárdenes, Diana Alvarez, Frank Schneider, Joseph M Pilewski, Mauricio Rojas, Carol A Feghali-Bostwick. Am J Respir Cell Mol Biol 2019
14
100

Nintedanib reduces pulmonary fibrosis in a model of rheumatoid arthritis-associated interstitial lung disease.
Elizabeth F Redente, Martin A Aguilar, Bart P Black, Benjamin L Edelman, Ali N Bahadur, Stephen M Humphries, David A Lynch, Lutz Wollin, David W H Riches. Am J Physiol Lung Cell Mol Physiol 2018
42
100

Aberrant MHC class II expression in mouse joints leads to arthritis with extraarticular manifestations similar to rheumatoid arthritis.
Satoshi Kanazawa, Shusuke Ota, Chiyoko Sekine, Toyohiro Tada, Takanobu Otsuka, Takashi Okamoto, Grete Sønderstrup, B Matija Peterlin. Proc Natl Acad Sci U S A 2006
27
100

GRHL2 coordinates regeneration of a polarized mucociliary epithelium from basal stem cells.
Xia Gao, Aman S Bali, Scott H Randell, Brigid L M Hogan. J Cell Biol 2015
64
100

Suppression of expression of heat shock protein 70 by gefitinib and its contribution to pulmonary fibrosis.
Takushi Namba, Ken-ichiro Tanaka, Tatsuya Hoshino, Arata Azuma, Tohru Mizushima. PLoS One 2011
34
100

Nintedanib improves cardiac fibrosis but leaves pulmonary vascular remodelling unaltered in experimental pulmonary hypertension.
Nina Rol, Michiel A de Raaf, Xiaoqing Q Sun, Vincent P Kuiper, Denielli da Silva Gonçalves Bos, Chris Happé, Kondababu Kurakula, Chris Dickhoff, Raphael Thuillet, Ly Tu,[...]. Cardiovasc Res 2019
24
100


Single-Cell Reconstruction of Human Basal Cell Diversity in Normal and Idiopathic Pulmonary Fibrosis Lungs.
Gianni Carraro, Apoorva Mulay, Changfu Yao, Takako Mizuno, Bindu Konda, Martin Petrov, Daniel Lafkas, Joe R Arron, Cory M Hogaboam, Peter Chen,[...]. Am J Respir Crit Care Med 2020
44
100

Patients with idiopathic pulmonary fibrosis with antibodies to heat shock protein 70 have poor prognoses.
Rehan A Kahloon, Jianmin Xue, Arpit Bhargava, Eva Csizmadia, Leo Otterbein, Daniel J Kass, Jessica Bon, Makoto Soejima, Marc C Levesque, Kathleen O Lindell,[...]. Am J Respir Crit Care Med 2013
122
100

Potential of nintedanib in treatment of progressive fibrosing interstitial lung diseases.
Lutz Wollin, Jörg H W Distler, Elizabeth F Redente, David W H Riches, Susanne Stowasser, Rozsa Schlenker-Herceg, Toby M Maher, Martin Kolb. Eur Respir J 2019
95
100

Ensembl 2015.
Fiona Cunningham, M Ridwan Amode, Daniel Barrell, Kathryn Beal, Konstantinos Billis, Simon Brent, Denise Carvalho-Silva, Peter Clapham, Guy Coates, Stephen Fitzgerald,[...]. Nucleic Acids Res 2015
940
100

Muc5b overexpression causes mucociliary dysfunction and enhances lung fibrosis in mice.
Laura A Hancock, Corinne E Hennessy, George M Solomon, Evgenia Dobrinskikh, Alani Estrella, Naoko Hara, David B Hill, William J Kissner, Matthew R Markovetz, Diane E Grove Villalon,[...]. Nat Commun 2018
95
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.