A citation-based method for searching scientific literature

Laxman Durgam, Lalitha Guruprasad. J Biomol Struct Dyn 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of chymotrypsin-like protease inhibitors of SARS-CoV-2 via integrated computational approach.
Salman Ali Khan, Komal Zia, Sajda Ashraf, Reaz Uddin, Zaheer Ul-Haq. J Biomol Struct Dyn 2021
185
100

Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved α-ketoamide inhibitors.
Linlin Zhang, Daizong Lin, Xinyuanyuan Sun, Ute Curth, Christian Drosten, Lucie Sauerhering, Stephan Becker, Katharina Rox, Rolf Hilgenfeld. Science 2020
100

PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery.
Jing-Fang Yang, Fan Wang, Wen Jiang, Guang-You Zhou, Cheng-Zhang Li, Xiao-Lei Zhu, Ge-Fei Hao, Guang-Fu Yang. J Chem Inf Model 2018
22
100

A 'rule of three' for fragment-based lead discovery?
Miles Congreve, Robin Carr, Chris Murray, Harren Jhoti. Drug Discov Today 2003
771
100

Structural basis for the inhibition of SARS-CoV-2 main protease by antineoplastic drug carmofur.
Zhenming Jin, Yao Zhao, Yuan Sun, Bing Zhang, Haofeng Wang, Yan Wu, Yan Zhu, Chen Zhu, Tianyu Hu, Xiaoyu Du,[...]. Nat Struct Mol Biol 2020
210
100

Pexidartinib: First Approval.
Yvette N Lamb. Drugs 2019
57
100

Coronavirus infections and immune responses.
Geng Li, Yaohua Fan, Yanni Lai, Tiantian Han, Zonghui Li, Peiwen Zhou, Pan Pan, Wenbiao Wang, Dingwen Hu, Xiaohong Liu,[...]. J Med Virol 2020
861
100


UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
100

Anisotropic network model: systematic evaluation and a new web interface.
Eran Eyal, Lee-Wei Yang, Ivet Bahar. Bioinformatics 2006
225
100


A previously undescribed coronavirus associated with respiratory disease in humans.
Ron A M Fouchier, Nico G Hartwig, Theo M Bestebroer, Berend Niemeyer, Jan C de Jong, James H Simon, Albert D M E Osterhaus. Proc Natl Acad Sci U S A 2004
394
100

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney,[...]. Nature 2020
100


g_mmpbsa--a GROMACS tool for high-throughput MM-PBSA calculations.
Rashmi Kumari, Rajendra Kumar, Andrew Lynn. J Chem Inf Model 2014
100

Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia.
Ali M Zaki, Sander van Boheemen, Theo M Bestebroer, Albert D M E Osterhaus, Ron A M Fouchier. N Engl J Med 2012
100

MODE-TASK: large-scale protein motion tools.
Caroline Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop. Bioinformatics 2018
22
100


Fragment-based lead discovery grows up.
Monya Baker. Nat Rev Drug Discov 2013
132
100

Small-molecule library screening by docking with PyRx.
Sargis Dallakyan, Arthur J Olson. Methods Mol Biol 2015
679
100

ACPYPE - AnteChamber PYthon Parser interfacE.
Alan W Sousa da Silva, Wim F Vranken. BMC Res Notes 2012
100

Comparison of multiple Amber force fields and development of improved protein backbone parameters.
Viktor Hornak, Robert Abel, Asim Okur, Bentley Strockbine, Adrian Roitberg, Carlos Simmerling. Proteins 2006
100

State-of-the-art tools unveil potent drug targets amongst clinically approved drugs to inhibit helicase in SARS-CoV-2.
J Francis Borgio, Hind Saleh Alsuwat, Waad Mohammed Al Otaibi, Abdallah M Ibrahim, Noor B Almandil, Lubna Ibrahim Al Asoom, Mohammed Salahuddin, Balu Kamaraj, Sayed AbdulAzeez. Arch Med Sci 2020
47
100



Antitussive noscapine and antiviral drug conjugates as arsenal against COVID-19: a comprehensive chemoinformatics analysis.
Neeraj Kumar, Amardeep Awasthi, Anchala Kumari, Damini Sood, Pallavi Jain, Taru Singh, Neera Sharma, Abhinav Grover, Ramesh Chandra. J Biomol Struct Dyn 2022
19
100

75
100

Automatic atom type and bond type perception in molecular mechanical calculations.
Junmei Wang, Wei Wang, Peter A Kollman, David A Case. J Mol Graph Model 2006
100

In silico Strategies to Support Fragment-to-Lead Optimization in Drug Discovery.
Lauro Ribeiro de Souza Neto, José Teófilo Moreira-Filho, Bruno Junior Neves, Rocío Lucía Beatriz Riveros Maidana, Ana Carolina Ramos Guimarães, Nicholas Furnham, Carolina Horta Andrade, Floriano Paes Silva. Front Chem 2020
46
100

Principal component analysis for protein folding dynamics.
Gia G Maisuradze, Adam Liwo, Harold A Scheraga. J Mol Biol 2009
200
100

The 'rule of three' for fragment-based drug discovery: where are we now?
Harren Jhoti, Glyn Williams, David C Rees, Christopher W Murray. Nat Rev Drug Discov 2013
133
100

Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.
Zhenming Jin, Xiaoyu Du, Yechun Xu, Yongqiang Deng, Meiqin Liu, Yao Zhao, Bing Zhang, Xiaofeng Li, Leike Zhang, Chao Peng,[...]. Nature 2020
100

Identification of a new human coronavirus.
Lia van der Hoek, Krzysztof Pyrc, Maarten F Jebbink, Wilma Vermeulen-Oost, Ron J M Berkhout, Katja C Wolthers, Pauline M E Wertheim-van Dillen, Jos Kaandorp, Joke Spaargaren, Ben Berkhout. Nat Med 2004
100

Fragment-to-Lead Medicinal Chemistry Publications in 2018.
Daniel A Erlanson, Iwan J P de Esch, Wolfgang Jahnke, Christopher N Johnson, Paul N Mortenson. J Med Chem 2020
37
100

Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia.
Patrick C Y Woo, Susanna K P Lau, Chung-ming Chu, Kwok-hung Chan, Hoi-wah Tsoi, Yi Huang, Beatrice H L Wong, Rosana W S Poon, James J Cai, Wei-kwang Luk,[...]. J Virol 2005
917
100

Predicting skin permeability.
R O Potts, R H Guy. Pharm Res 1992
833
100


Prevalence of comorbidities and its effects in patients infected with SARS-CoV-2: a systematic review and meta-analysis.
Jing Yang, Ya Zheng, Xi Gou, Ke Pu, Zhaofeng Chen, Qinghong Guo, Rui Ji, Haojia Wang, Yuping Wang, Yongning Zhou. Int J Infect Dis 2020
100

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.
Garrett M Morris, Ruth Huey, William Lindstrom, Michel F Sanner, Richard K Belew, David S Goodsell, Arthur J Olson. J Comput Chem 2009
100


Protease Inhibitory Effect of Natural Polyphenolic Compounds on SARS-CoV-2: An In Silico Study.
Rajveer Singh, Anupam Gautam, Shivani Chandel, Arijit Ghosh, Dhritiman Dey, Syamal Roy, Velayutham Ravichandiran, Dipanjan Ghosh. Molecules 2020
18
100

ProDy: protein dynamics inferred from theory and experiments.
Ahmet Bakan, Lidio M Meireles, Ivet Bahar. Bioinformatics 2011
590
100

Vemurafenib: the first drug approved for BRAF-mutant cancer.
Gideon Bollag, James Tsai, Jiazhong Zhang, Chao Zhang, Prabha Ibrahim, Keith Nolop, Peter Hirth. Nat Rev Drug Discov 2012
452
100

Structure-based design of antiviral drug candidates targeting the SARS-CoV-2 main protease.
Wenhao Dai, Bing Zhang, Xia-Ming Jiang, Haixia Su, Jian Li, Yao Zhao, Xiong Xie, Zhenming Jin, Jingjing Peng, Fengjiang Liu,[...]. Science 2020
659
100


Novel Wuhan (2019-nCoV) Coronavirus.
W Graham Carlos, Charles S Dela Cruz, Bin Cao, Susan Pasnick, Shazia Jamil. Am J Respir Crit Care Med 2020
278
100

SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion.
Petra Mlcochova, Steven A Kemp, Mahesh Shanker Dhar, Guido Papa, Bo Meng, Isabella A T M Ferreira, Rawlings Datir, Dami A Collier, Anna Albecka, Sujeet Singh,[...]. Nature 2021
391
100

Anti-SARS-CoV-2 activities in vitro of Shuanghuanglian preparations and bioactive ingredients.
Hai-Xia Su, Sheng Yao, Wen-Feng Zhao, Min-Jun Li, Jia Liu, Wei-Juan Shang, Hang Xie, Chang-Qiang Ke, Hang-Chen Hu, Mei-Na Gao,[...]. Acta Pharmacol Sin 2020
161
100

Coronavirus infections in working adults. Eight-year study with 229 E and OC 43.
J O Hendley, H B Fishburne, J M Gwaltney. Am Rev Respir Dis 1972
91
100

ACFIS: a web server for fragment-based drug discovery.
Ge-Fei Hao, Wen Jiang, Yuan-Nong Ye, Feng-Xu Wu, Xiao-Lei Zhu, Feng-Biao Guo, Guang-Fu Yang. Nucleic Acids Res 2016
56
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.