A citation-based method for searching scientific literature

Bingzhou Han, Yage Zhang, Yang Zhou, Biao Zhang, Christopher J Krueger, Xuetong Bi, Zuoyan Zhu, Xiangjun Tong, Bo Zhang. Biology (Basel) 2022
Times Cited: 2







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Enhanced Cas12a editing in mammalian cells and zebrafish.
Pengpeng Liu, Kevin Luk, Masahiro Shin, Feston Idrizi, Samantha Kwok, Benjamin Roscoe, Esther Mintzer, Sneha Suresh, Kyle Morrison, Josias B Frazão,[...]. Nucleic Acids Res 2019
37
100

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.
Miguel A Moreno-Mateos, Juan P Fernandez, Romain Rouet, Charles E Vejnar, Maura A Lane, Emily Mis, Mustafa K Khokha, Jennifer A Doudna, Antonio J Giraldez. Nat Commun 2017
139
100

Expanding the CRISPR Toolbox with ErCas12a in Zebrafish and Human Cells.
Wesley A Wierson, Brandon W Simone, Zachary WareJoncas, Carla Mann, Jordan M Welker, Bibekananda Kar, Michael J Emch, Iddo Friedberg, William A C Gendron, Michael A Barry,[...]. CRISPR J 2019
15
100

Elevated 4-hydroxynonenal induces hyperglycaemia via Aldh3a1 loss in zebrafish and associates with diabetes progression in humans.
Bowen Lou, Mike Boger, Katrin Bennewitz, Carsten Sticht, Stefan Kopf, Jakob Morgenstern, Thomas Fleming, Rüdiger Hell, Zuyi Yuan, Peter Paul Nawroth,[...]. Redox Biol 2020
15
50

A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.
Gaurav K Varshney, Blake Carrington, Wuhong Pei, Kevin Bishop, Zelin Chen, Chunxin Fan, Lisha Xu, Marypat Jones, Matthew C LaFave, Johan Ledin,[...]. Nat Protoc 2016
96
50

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
50

Fast and sensitive detection of indels induced by precise gene targeting.
Zhang Yang, Catharina Steentoft, Camilla Hauge, Lars Hansen, Allan Lind Thomsen, Francesco Niola, Malene B Vester-Christensen, Morten Frödin, Henrik Clausen, Hans H Wandall,[...]. Nucleic Acids Res 2015
106
50

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
50

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.
Miguel A Moreno-Mateos, Charles E Vejnar, Jean-Denis Beaudoin, Juan P Fernandez, Emily K Mis, Mustafa K Khokha, Antonio J Giraldez. Nat Methods 2015
580
50

Multiplexed CRISPR/Cas9 Targeting of Genes Implicated in Retinal Regeneration and Degeneration.
Arife Unal Eroglu, Timothy S Mulligan, Liyun Zhang, David T White, Sumitra Sengupta, Cathy Nie, Noela Y Lu, Jiang Qian, Lisha Xu, Wuhong Pei,[...]. Front Cell Dev Biol 2018
9
50

In vivo dissection of Rhoa function in vascular development using zebrafish.
Laura M Pillay, Joseph J Yano, Andrew E Davis, Matthew G Butler, Megan O Ezeude, Jong S Park, Keith A Barnes, Vanessa L Reyes, Daniel Castranova, Aniket V Gore,[...]. Angiogenesis 2022
1
100


Efficient identification of TALEN-mediated genome modifications using heteroduplex mobility assays.
Satoshi Ota, Yu Hisano, Michiko Muraki, Kazuyuki Hoshijima, Timothy J Dahlem, David J Grunwald, Yasushi Okada, Atsuo Kawahara. Genes Cells 2013
135
50

Method for isolation of PCR-ready genomic DNA from zebrafish tissues.
Nathan D Meeker, Sarah A Hutchinson, Linh Ho, Nikolaus S Trede. Biotechniques 2007
238
50

A rapid and efficient method of genotyping zebrafish mutants.
John M Parant, Stephen A George, Rob Pryor, Carl T Wittwer, H Joseph Yost. Dev Dyn 2009
44
50

SpCas9- and LbCas12a-Mediated DNA Editing Produce Different Gene Knockout Outcomes in Zebrafish Embryos.
Darya A Meshalkina, Aleksei S Glushchenko, Elana V Kysil, Igor V Mizgirev, Andrej Frolov. Genes (Basel) 2020
4
50

A large-scale insertional mutagenesis screen in zebrafish.
A Amsterdam, S Burgess, G Golling, W Chen, Z Sun, K Townsend, S Farrington, M Haldi, N Hopkins. Genes Dev 1999
366
50


High-throughput genome editing and phenotyping facilitated by high resolution melting curve analysis.
Holly R Thomas, Stefanie M Percival, Bradley K Yoder, John M Parant. PLoS One 2014
80
50

Transformed notochordal cells trigger chronic wounds in zebrafish, destabilizing the vertebral column and bone homeostasis.
Paco López-Cuevas, Luke Deane, Yushi Yang, Chrissy L Hammond, Erika Kague. Dis Model Mech 2021
3
50

Rapid reverse genetic screening using CRISPR in zebrafish.
Arish N Shah, Crystal F Davey, Alex C Whitebirch, Adam C Miller, Cecilia B Moens. Nat Methods 2015
204
50

Genome editing in zebrafish: a practical overview.
Robert Sertori, Monique Trengove, Faiza Basheer, Alister C Ward, Clifford Liongue. Brief Funct Genomics 2016
21
50


CBFβ and RUNX1 are required at 2 different steps during the development of hematopoietic stem cells in zebrafish.
Erica Bresciani, Blake Carrington, Stephen Wincovitch, MaryPat Jones, Aniket V Gore, Brant M Weinstein, Raman Sood, P Paul Liu. Blood 2014
41
50

A mixing heteroduplex mobility assay (mHMA) to genotype homozygous mutants with small indels generated by CRISPR-Cas9 nucleases.
Samantha D Foster, Sarah R Glover, Ashley N Turner, Kiranam Chatti, Anil K Challa. MethodsX 2018
6
50

Mutation detection using Surveyor nuclease.
Peter Qiu, Harini Shandilya, James M D'Alessio, Kevin O'Connor, Jeffrey Durocher, Gary F Gerard. Biotechniques 2004
212
50

A beginner's guide to understanding and implementing the genetic modification of zebrafish.
Sara A Rafferty, T Alexander Quinn. Prog Biophys Mol Biol 2018
37
50

A large-scale zebrafish gene knockout resource for the genome-wide study of gene function.
Gaurav K Varshney, Jing Lu, Derek E Gildea, Haigen Huang, Wuhong Pei, Zhongan Yang, Sunny C Huang, David Schoenfeld, Nam H Pho, David Casero,[...]. Genome Res 2013
77
50

Reticular dysgenesis-associated AK2 protects hematopoietic stem and progenitor cell development from oxidative stress.
Alberto Rissone, Katja Gabriele Weinacht, Giancarlo la Marca, Kevin Bishop, Elisa Giocaliere, Jayashree Jagadeesh, Kerstin Felgentreff, Kerry Dobbs, Waleed Al-Herz, Marypat Jones,[...]. J Exp Med 2015
34
50

Peak Studio: a tool for the visualization and analysis of fragment analysis files.
Jonathan McCafferty, Robert Reid, Melanie Spencer, Timothy Hamp, Anthony Fodor. Environ Microbiol Rep 2012
16
50

Allele-Specific Quantitative PCR for Accurate, Rapid, and Cost-Effective Genotyping.
Han B Lee, Tanya L Schwab, Alaa Koleilat, Hirotaka Ata, Camden L Daby, Roberto Lopez Cervera, Melissa S McNulty, Hannah S Bostwick, Karl J Clark. Hum Gene Ther 2016
13
50

CRISPR gRNA phenotypic screening in zebrafish reveals pro-regenerative genes in spinal cord injury.
Marcus Keatinge, Themistoklis M Tsarouchas, Tahimina Munir, Nicola J Porter, Juan Larraz, Davide Gianni, Hui-Hsin Tsai, Catherina G Becker, David A Lyons, Thomas Becker. PLoS Genet 2021
12
50

Genetic compensation in a stable slc25a46 mutant zebrafish: A case for using F0 CRISPR mutagenesis to study phenotypes caused by inherited disease.
Elena Buglo, Evan Sarmiento, Nicole Belliard Martuscelli, David W Sant, Matt C Danzi, Alexander J Abrams, Julia E Dallman, Stephan Züchner. PLoS One 2020
18
50

A Rapid CRISPR/Cas-based Mutagenesis Assay in Zebrafish for Identification of Genes Involved in Thyroid Morphogenesis and Function.
A Trubiroha, P Gillotay, N Giusti, D Gacquer, F Libert, A Lefort, B Haerlingen, X De Deken, R Opitz, S Costagliola. Sci Rep 2018
25
50

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.
James A Gagnon, Eivind Valen, Summer B Thyme, Peng Huang, Laila Akhmetova, Andrea Pauli, Tessa G Montague, Steven Zimmerman, Constance Richter, Alexander F Schier. PLoS One 2014
510
50

A simple method based on Sanger sequencing and MS Word wildcard searching to identify Cas9-induced frameshift mutations.
Hui Jie, Zhuoling Li, Ping Wang, Linjie Zhao, Qian Zhang, Xiaomin Yao, Xiangrong Song, Yinglan Zhao, Shaohua Yao. Lab Invest 2017
2
50

A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1.
Matthew C LaFave, Gaurav K Varshney, Meghana Vemulapalli, James C Mullikin, Shawn M Burgess. Genetics 2014
56
50

Easy quantitative assessment of genome editing by sequence trace decomposition.
Eva K Brinkman, Tao Chen, Mario Amendola, Bas van Steensel. Nucleic Acids Res 2014
50

A systematic genome-wide analysis of zebrafish protein-coding gene function.
Ross N W Kettleborough, Elisabeth M Busch-Nentwich, Steven A Harvey, Christopher M Dooley, Ewart de Bruijn, Freek van Eeden, Ian Sealy, Richard J White, Colin Herd, Isaac J Nijman,[...]. Nature 2013
382
50

High-throughput genotyping of CRISPR/Cas9-mediated mutants using fluorescent PCR-capillary gel electrophoresis.
Muhammad Khairul Ramlee, Tingdong Yan, Alice M S Cheung, Charles T H Chuah, Shang Li. Sci Rep 2015
55
50

Deconvolution of Complex DNA Repair (DECODR): Establishing a Novel Deconvolution Algorithm for Comprehensive Analysis of CRISPR-Edited Sanger Sequencing Data.
Kevin Bloh, Rohan Kanchana, Pawel Bialk, Kelly Banas, Zugui Zhang, Byung-Chun Yoo, Eric B Kmiec. CRISPR J 2021
12
50


Targeted candidate gene screens using CRISPR/Cas9 technology.
A N Shah, C B Moens, A C Miller. Methods Cell Biol 2016
13
50


In vivo genome editing using a high-efficiency TALEN system.
Victoria M Bedell, Ying Wang, Jarryd M Campbell, Tanya L Poshusta, Colby G Starker, Randall G Krug, Wenfang Tan, Sumedha G Penheiter, Alvin C Ma, Anskar Y H Leung,[...]. Nature 2012
653
50

mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces unexpected transcripts that escape nonsense-mediated decay.
Jennifer L Anderson, Timothy S Mulligan, Meng-Chieh Shen, Hui Wang, Catherine M Scahill, Frederick J Tan, Shao J Du, Elisabeth M Busch-Nentwich, Steven A Farber. PLoS Genet 2017
60
50


3D assessment of intervertebral disc degeneration in zebrafish identifies changes in bone density that prime disc disease.
Erika Kague, Francesco Turci, Elis Newman, Yushi Yang, Kate Robson Brown, Mona S Aglan, Ghada A Otaify, Samia A Temtamy, Victor L Ruiz-Perez, Stephen Cross,[...]. Bone Res 2021
9
50

Large-scale generation and phenotypic characterization of zebrafish CRISPR mutants of DNA repair genes.
Unbeom Shin, Khriezhanuo Nakhro, Chang-Kyu Oh, Blake Carrington, HeaIn Song, Gaurav K Varshney, Yeongjae Kim, Hyemin Song, Sangeun Jeon, Gabrielle Robbins,[...]. DNA Repair (Amst) 2021
4
50

Functional analysis of Sonic Hedgehog variants associated with holoprosencephaly in humans using a CRISPR/Cas9 zebrafish model.
Sungkook Hong, Ping Hu, Jae Hee Jang, Blake Carrington, Raman Sood, Seth I Berger, Erich Roessler, Maximilian Muenke. Hum Mutat 2020
1
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.