A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Real-Time Conformational Dynamics of SARS-CoV-2 Spikes on Virus Particles.
Maolin Lu, Pradeep D Uchil, Wenwei Li, Desheng Zheng, Daniel S Terry, Jason Gorman, Wei Shi, Baoshan Zhang, Tongqing Zhou, Shilei Ding,[...]. Cell Host Microbe 2020
79
100

Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket.
Lucy Fallon, Kellon A A Belfon, Lauren Raguette, Yuzhang Wang, Darya Stepanenko, Abbigayle Cuomo, Jose Guerra, Stephanie Budhan, Sarah Varghese, Christopher P Corbo,[...]. J Am Chem Soc 2021
21
100

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.
Yves Dehouck, Aline Grosfils, Benjamin Folch, Dimitri Gilis, Philippe Bogaerts, Marianne Rooman. Bioinformatics 2009
256
100

Residues crucial for maintaining short paths in network communication mediate signaling in proteins.
Antonio del Sol, Hirotomo Fujihashi, Dolors Amoros, Ruth Nussinov. Mol Syst Biol 2006
230
100

Sixteen novel lineages of SARS-CoV-2 in South Africa.
Houriiyah Tegally, Eduan Wilkinson, Richard J Lessells, Jennifer Giandhari, Sureshnee Pillay, Nokukhanya Msomi, Koleka Mlisana, Jinal N Bhiman, Anne von Gottberg, Sibongile Walaza,[...]. Nat Med 2021
201
100

Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms.
M Alejandra Tortorici, Martina Beltramello, Florian A Lempp, Dora Pinto, Ha V Dang, Laura E Rosen, Matthew McCallum, John Bowen, Andrea Minola, Stefano Jaconi,[...]. Science 2020
318
100

Elucidation of interactions regulating conformational stability and dynamics of SARS-CoV-2 S-protein.
Takaharu Mori, Jaewoon Jung, Chigusa Kobayashi, Hisham M Dokainish, Suyong Re, Yuji Sugita. Biophys J 2021
17
100


Structural insights into the SARS-CoV-2 Omicron RBD-ACE2 interaction.
Jun Lan, Xinheng He, Yifei Ren, Ziyi Wang, Huan Zhou, Shilong Fan, Chenyou Zhu, Dongsheng Liu, Bin Shao, Tie-Yan Liu,[...]. Cell Res 2022
10
100

Locating the active sites of enzymes using mechanical properties.
Sophie Sacquin-Mora, Emilie Laforet, Richard Lavery. Proteins 2007
64
100

Molecular insights into receptor binding energetics and neutralization of SARS-CoV-2 variants.
Melanie Koehler, Ankita Ray, Rodrigo A Moreira, Blinera Juniku, Adolfo B Poma, David Alsteens. Nat Commun 2021
21
100

Comparing protein structures with RINspector automation in Cytoscape.
Guillaume Brysbaert, Théo Mauri, Marc F Lensink. F1000Res 2018
10
100

A thermostable, closed SARS-CoV-2 spike protein trimer.
Xiaoli Xiong, Kun Qu, Katarzyna A Ciazynska, Myra Hosmillo, Andrew P Carter, Soraya Ebrahimi, Zunlong Ke, Sjors H W Scheres, Laura Bergamaschi, Guinevere L Grice,[...]. Nat Struct Mol Biol 2020
131
100

Molecular basis of receptor binding and antibody neutralization of Omicron.
Qin Hong, Wenyu Han, Jiawei Li, Shiqi Xu, Yifan Wang, Cong Xu, Zuyang Li, Yanxing Wang, Chao Zhang, Zhong Huang,[...]. Nature 2022
14
100

Characterization of the receptor-binding domain (RBD) of 2019 novel coronavirus: implication for development of RBD protein as a viral attachment inhibitor and vaccine.
Wanbo Tai, Lei He, Xiujuan Zhang, Jing Pu, Denis Voronin, Shibo Jiang, Yusen Zhou, Lanying Du. Cell Mol Immunol 2020
802
100

Signatures in SARS-CoV-2 spike protein conferring escape to neutralizing antibodies.
Marta Alenquer, Filipe Ferreira, Diana Lousa, Mariana Valério, Mónica Medina-Lopes, Marie-Louise Bergman, Juliana Gonçalves, Jocelyne Demengeot, Ricardo B Leite, Jingtao Lilue,[...]. PLoS Pathog 2021
29
100


Understanding the Driving Forces That Trigger Mutations in SARS-CoV-2: Mutational Energetics and the Role of Arginine Blockers in COVID-19 Therapy.
Harry Ridgway, Christos T Chasapis, Konstantinos Kelaidonis, Irene Ligielli, Graham J Moore, Laura Kate Gadanec, Anthony Zulli, Vasso Apostolopoulos, Thomas Mavromoustakos, John M Matsoukas. Viruses 2022
4
100

Distant residues modulate conformational opening in SARS-CoV-2 spike protein.
Dhiman Ray, Ly Le, Ioan Andricioaei. Proc Natl Acad Sci U S A 2021
19
100

Structural diversity of the SARS-CoV-2 Omicron spike.
Sophie M-C Gobeil, Rory Henderson, Victoria Stalls, Katarzyna Janowska, Xiao Huang, Aaron May, Micah Speakman, Esther Beaudoin, Kartik Manne, Dapeng Li,[...]. Mol Cell 2022
22
100

Detection of a SARS-CoV-2 variant of concern in South Africa.
Houriiyah Tegally, Eduan Wilkinson, Marta Giovanetti, Arash Iranzadeh, Vagner Fonseca, Jennifer Giandhari, Deelan Doolabh, Sureshnee Pillay, Emmanuel James San, Nokukhanya Msomi,[...]. Nature 2021
697
100

Neutralization of SARS-CoV-2 lineage B.1.1.7 pseudovirus by BNT162b2 vaccine-elicited human sera.
Alexander Muik, Ann-Kathrin Wallisch, Bianca Sänger, Kena A Swanson, Julia Mühl, Wei Chen, Hui Cai, Daniel Maurus, Ritu Sarkar, Özlem Türeci,[...]. Science 2021
340
100

BeAtMuSiC: Prediction of changes in protein-protein binding affinity on mutations.
Yves Dehouck, Jean Marc Kwasigroch, Marianne Rooman, Dimitri Gilis. Nucleic Acids Res 2013
171
100

Interaction energy based protein structure networks.
M S Vijayabaskar, Saraswathi Vishveshwara. Biophys J 2010
136
100

SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein-ACE2 complex.
Dhiraj Mannar, James W Saville, Xing Zhu, Shanti S Srivastava, Alison M Berezuk, Katharine S Tuttle, Ana Citlali Marquez, Inna Sekirov, Sriram Subramaniam. Science 2022
133
100

Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Wanchao Yin, Youwei Xu, Peiyu Xu, Xiaodan Cao, Canrong Wu, Chunyin Gu, Xinheng He, Xiaoxi Wang, Sijie Huang, Qingning Yuan,[...]. Science 2022
53
100

Distinct conformational states of SARS-CoV-2 spike protein.
Yongfei Cai, Jun Zhang, Tianshu Xiao, Hanqin Peng, Sarah M Sterling, Richard M Walsh, Shaun Rawson, Sophia Rits-Volloch, Bing Chen. Science 2020
508
100

Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2.
Qihui Wang, Yanfang Zhang, Lili Wu, Sheng Niu, Chunli Song, Zengyuan Zhang, Guangwen Lu, Chengpeng Qiao, Yu Hu, Kwok-Yung Yuen,[...]. Cell 2020
100


Structure-guided covalent stabilization of coronavirus spike glycoprotein trimers in the closed conformation.
Matthew McCallum, Alexandra C Walls, John E Bowen, Davide Corti, David Veesler. Nat Struct Mol Biol 2020
87
100

A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions.
Magnus S Bauer, Sophia Gruber, Adina Hausch, Priscila S F C Gomes, Lukas F Milles, Thomas Nicolaus, Leonard C Schendel, Pilar López Navajas, Erik Procko, Daniel Lietha,[...]. Proc Natl Acad Sci U S A 2022
1
100


Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.
Bette Korber, Will M Fischer, Sandrasegaram Gnanakaran, Hyejin Yoon, James Theiler, Werner Abfalterer, Nick Hengartner, Elena E Giorgi, Tanmoy Bhattacharya, Brian Foley,[...]. Cell 2020
100

Epitope Classification and RBD Binding Properties of Neutralizing Antibodies Against SARS-CoV-2 Variants of Concern.
Ashlesha Deshpande, Bethany D Harris, Luis Martinez-Sobrido, James J Kobie, Mark R Walter. Front Immunol 2021
24
100

Mechanical activation of spike fosters SARS-CoV-2 viral infection.
Wei Hu, Yong Zhang, Panyu Fei, Tongtong Zhang, Danmei Yao, Yufei Gao, Jia Liu, Hui Chen, Qiao Lu, Tenny Mudianto,[...]. Cell Res 2021
8
100

Antibodies induced by an ancestral SARS-CoV-2 strain that cross-neutralize variants from Alpha to Omicron BA.1.
Ian W Windsor, Pei Tong, Olivia Lavidor, Ali Sanjari Moghaddam, Lindsay G A McKay, Avneesh Gautam, Yuezhou Chen, Elizabeth A MacDonald, Duck Kyun Yoo, Anthony Griffths,[...]. Sci Immunol 2022
2
100

The emerging plasticity of SARS-CoV-2.
Kevin D McCormick, Jana L Jacobs, John W Mellors. Science 2021
56
100

Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Kang Wang, Zijing Jia, Linilin Bao, Lei Wang, Lei Cao, Hang Chi, Yaling Hu, Qianqian Li, Yunjiao Zhou, Yinan Jiang,[...]. Nature 2022
37
100

The SARS-CoV-2 Spike variant D614G favors an open conformational state.
Rachael A Mansbach, Srirupa Chakraborty, Kien Nguyen, David C Montefiori, Bette Korber, S Gnanakaran. Sci Adv 2021
90
100

SARS-CoV-2 D614G variant exhibits efficient replication ex vivo and transmission in vivo.
Yixuan J Hou, Shiho Chiba, Peter Halfmann, Camille Ehre, Makoto Kuroda, Kenneth H Dinnon, Sarah R Leist, Alexandra Schäfer, Noriko Nakajima, Kenta Takahashi,[...]. Science 2020
483
100



Considerable escape of SARS-CoV-2 Omicron to antibody neutralization.
Delphine Planas, Nell Saunders, Piet Maes, Florence Guivel-Benhassine, Cyril Planchais, Julian Buchrieser, William-Henry Bolland, Françoise Porrot, Isabelle Staropoli, Frederic Lemoine,[...]. Nature 2022
380
100

Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift.
Elisabetta Cameroni, John E Bowen, Laura E Rosen, Christian Saliba, Samantha K Zepeda, Katja Culap, Dora Pinto, Laura A VanBlargan, Anna De Marco, Julia di Iulio,[...]. Nature 2022
343
100

Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody.
Dora Pinto, Young-Jun Park, Martina Beltramello, Alexandra C Walls, M Alejandra Tortorici, Siro Bianchi, Stefano Jaconi, Katja Culap, Fabrizia Zatta, Anna De Marco,[...]. Nature 2020
963
100

CHARMM36m: an improved force field for folded and intrinsically disordered proteins.
Jing Huang, Sarah Rauscher, Grzegorz Nawrocki, Ting Ran, Michael Feig, Bert L de Groot, Helmut Grubmüller, Alexander D MacKerell. Nat Methods 2017
100

Scalable molecular dynamics with NAMD.
James C Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D Skeel, Laxmikant Kalé, Klaus Schulten. J Comput Chem 2005
100

Defining variant-resistant epitopes targeted by SARS-CoV-2 antibodies: A global consortium study.
Kathryn M Hastie, Haoyang Li, Daniel Bedinger, Sharon L Schendel, S Moses Dennison, Kan Li, Vamseedhar Rayaprolu, Xiaoying Yu, Colin Mann, Michelle Zandonatti,[...]. Science 2021
89
100

SARS-CoV-2 Variants Increase Kinetic Stability of Open Spike Conformations as an Evolutionary Strategy.
Ziwei Yang, Yang Han, Shilei Ding, Wei Shi, Tongqing Zhou, Andrés Finzi, Peter D Kwong, Walther Mothes, Maolin Lu. mBio 2022
10
100

Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Lei Wang, Wangjun Fu, Linlin Bao, Zijing Jia, Yuxia Zhang, Yunjiao Zhou, Wei Wu, Jianbo Wu, Qianqian Zhang, Yidan Gao,[...]. Cell Res 2022
1
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.