A citation-based method for searching scientific literature

Juha Vahokoski, Lesley J Calder, Andrea J Lopez, Justin E Molloy, Inari Kursula, Peter B Rosenthal. PLoS Pathog 2022
Times Cited: 3







List of co-cited articles
23 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Structural states and dynamics of the D-loop in actin.
Zeynep A Oztug Durer, Dmitri S Kudryashov, Michael R Sawaya, Christian Altenbach, Wayne Hubbell, Emil Reisler. Biophys J 2012
32
66

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
66

Unusual dynamics of the divergent malaria parasite PfAct1 actin filament.
Hailong Lu, Patricia M Fagnant, Kathleen M Trybus. Proc Natl Acad Sci U S A 2019
10
66

Atomic view into Plasmodium actin polymerization, ATP hydrolysis, and fragmentation.
Esa-Pekka Kumpula, Andrea J Lopez, Leila Tajedin, Huijong Han, Inari Kursula. PLoS Biol 2019
11
66

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
66

Direct visualization of secondary structures of F-actin by electron cryomicroscopy.
Takashi Fujii, Atsuko H Iwane, Toshio Yanagida, Keiichi Namba. Nature 2010
266
66

CTFFIND4: Fast and accurate defocus estimation from electron micrographs.
Alexis Rohou, Nikolaus Grigorieff. J Struct Biol 2015
66

Near-atomic structure of jasplakinolide-stabilized malaria parasite F-actin reveals the structural basis of filament instability.
Sabrina Pospich, Esa-Pekka Kumpula, Julian von der Ecken, Juha Vahokoski, Inari Kursula, Stefan Raunser. Proc Natl Acad Sci U S A 2017
39
66

Apicomplexan actin polymerization depends on nucleation.
Esa-Pekka Kumpula, Isa Pires, Devaki Lasiwa, Henni Piirainen, Ulrich Bergmann, Juha Vahokoski, Inari Kursula. Sci Rep 2017
19
66

Structural differences explain diverse functions of Plasmodium actins.
Juha Vahokoski, Saligram Prabhakar Bhargav, Ambroise Desfosses, Maria Andreadaki, Esa-Pekka Kumpula, Silvia Muñico Martinez, Alexander Ignatev, Simone Lepper, Friedrich Frischknecht, Inga Sidén-Kiamos,[...]. PLoS Pathog 2014
45
66

Structural transitions of F-actin upon ATP hydrolysis at near-atomic resolution revealed by cryo-EM.
Felipe Merino, Sabrina Pospich, Johanna Funk, Thorsten Wagner, Florian Küllmer, Hans-Dieter Arndt, Peter Bieling, Stefan Raunser. Nat Struct Mol Biol 2018
94
66

Evolutionarily divergent, unstable filamentous actin is essential for gliding motility in apicomplexan parasites.
Kristen M Skillman, Karthikeyan Diraviyam, Asis Khan, Keliang Tang, David Sept, L David Sibley. PLoS Pathog 2011
70
66

Structure of the F-actin-tropomyosin complex.
Julian von der Ecken, Mirco Müller, William Lehman, Dietmar J Manstein, Pawel A Penczek, Stefan Raunser. Nature 2015
252
66

Inter-subunit interactions drive divergent dynamics in mammalian and Plasmodium actin filaments.
Ross G Douglas, Prajwal Nandekar, Julia-Elisabeth Aktories, Hirdesh Kumar, Rebekka Weber, Julia M Sattler, Mirko Singer, Simone Lepper, S Kashif Sadiq, Rebecca C Wade,[...]. PLoS Biol 2018
25
66


New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
66

Actin and Actin-Binding Proteins.
Thomas D Pollard. Cold Spring Harb Perspect Biol 2016
332
66

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
66

Actin structure and function.
Roberto Dominguez, Kenneth C Holmes. Annu Rev Biophys 2011
567
66

Cryo-EM structure of a human cytoplasmic actomyosin complex at near-atomic resolution.
Julian von der Ecken, Sarah M Heissler, Salma Pathan-Chhatbar, Dietmar J Manstein, Stefan Raunser. Nature 2016
143
66

D-loop Dynamics and Near-Atomic-Resolution Cryo-EM Structure of Phalloidin-Bound F-Actin.
Sanchaita Das, Peng Ge, Zeynep A Oztug Durer, Elena E Grintsevich, Z Hong Zhou, Emil Reisler. Structure 2020
12
66

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Dorothee Liebschner, Pavel V Afonine, Matthew L Baker, Gábor Bunkóczi, Vincent B Chen, Tristan I Croll, Bradley Hintze, Li Wei Hung, Swati Jain, Airlie J McCoy,[...]. Acta Crystallogr D Struct Biol 2019
33

The structure of the actin filament uncapping complex mediated by twinfilin.
Dennis M Mwangangi, Edward Manser, Robert C Robinson. Sci Adv 2021
11
33

Mechanism of synergistic actin filament pointed end depolymerization by cyclase-associated protein and cofilin.
Tommi Kotila, Hugo Wioland, Giray Enkavi, Konstantin Kogan, Ilpo Vattulainen, Antoine Jégou, Guillaume Romet-Lemonne, Pekka Lappalainen. Nat Commun 2019
45
33

An actin cytoskeleton with evolutionarily conserved functions in the absence of canonical actin-binding proteins.
Alexander R Paredez, Zoe June Assaf, David Sept, Ljudmilla Timofejeva, Scott C Dawson, Chung-Ju Rachel Wang, W Z Cande. Proc Natl Acad Sci U S A 2011
69
33

Capping protein regulators fine-tune actin assembly dynamics.
Marc Edwards, Adam Zwolak, Dorothy A Schafer, David Sept, Roberto Dominguez, John A Cooper. Nat Rev Mol Cell Biol 2014
153
33

Actin-depolymerizing factor, ADF/cofilin, is essentially required in assembly of Leishmania flagellum.
T V Satish Tammana, Amogh A Sahasrabuddhe, Kalyan Mitra, Virendra K Bajpai, Chhitar M Gupta. Mol Microbiol 2008
45
33


Solution structure and dynamics of ADF/cofilin from Leishmania donovani.
Prem Prakash Pathak, S V S R Krishna Pulavarti, Anupam Jain, Amogh Anant Sahasrabuddhe, Chhitar Mal Gupta, Ashish Arora. J Struct Biol 2010
10
33


The complexity and diversity of the actin cytoskeleton of trypanosomatids.
Andrea Vizcaíno-Castillo, Juan Felipe Osorio-Méndez, Javier R Ambrosio, Roberto Hernández, Ana María Cevallos. Mol Biochem Parasitol 2020
3
33

Atomic model of the actin filament.
K C Holmes, D Popp, W Gebhard, W Kabsch. Nature 1990
33

Hydrophobic loop dynamics and actin filament stability.
Damon Scoville, John D Stamm, Dora Toledo-Warshaviak, Christian Altenbach, Martin Phillips, Alexander Shvetsov, Peter A Rubenstein, Wayne L Hubbell, Emil Reisler. Biochemistry 2006
17
33

Structural basis of actin monomer re-charging by cyclase-associated protein.
Tommi Kotila, Konstantin Kogan, Giray Enkavi, Siyang Guo, Ilpo Vattulainen, Bruce L Goode, Pekka Lappalainen. Nat Commun 2018
42
33


Actin sequestering protein, profilin, regulates intracellular vesicle transport in Leishmania.
Bindu Ambaru, Anupriya Gopalsamy, T V Satish Tammana, Hosahalli S Subramanya, Chhitar M Gupta. Mol Biochem Parasitol 2020
5
33

An unconventional form of actin in protozoan hemoflagellate, Leishmania.
Prabodh Kapoor, Amogh A Sahasrabuddhe, Ashutosh Kumar, Kalyan Mitra, Mohammad Imran Siddiqi, Chhitar M Gupta. J Biol Chem 2008
23
33



A barbed end interference mechanism reveals how capping protein promotes nucleation in branched actin networks.
Johanna Funk, Felipe Merino, Matthias Schaks, Klemens Rottner, Stefan Raunser, Peter Bieling. Nat Commun 2021
12
33

Structural basis for polarized elongation of actin filaments.
Vilmos Zsolnay, Harshwardhan H Katkar, Steven Z Chou, Thomas D Pollard, Gregory A Voth. Proc Natl Acad Sci U S A 2020
10
33

Structures of cofilin-induced structural changes reveal local and asymmetric perturbations of actin filaments.
Andrew R Huehn, Jeffrey P Bibeau, Anthony C Schramm, Wenxiang Cao, Enrique M De La Cruz, Charles V Sindelar. Proc Natl Acad Sci U S A 2020
28
33


Oligomerization of coronin: Implication on actin filament length in Leishmania.
Rashmi Srivastava, Lova Prasadareddy Kajuluri, Neelam Pathak, Chhitar M Gupta, Amogh A Sahasrabuddhe. Cytoskeleton (Hoboken) 2015
8
33

The Giardia lamblia actin gene and the phylogeny of eukaryotes.
G Drouin, M Moniz de Sá, M Zuker. J Mol Evol 1995
72
33

D-Loop Mutation G42A/G46A Decreases Actin Dynamics.
Mizuki Matsuzaki, Ikuko Fujiwara, Sae Kashima, Tomoharu Matsumoto, Toshiro Oda, Masahito Hayashi, Kayo Maeda, Kingo Takiguchi, Yuichiro Maéda, Akihiro Narita. Biomolecules 2020
2
50

ADF/cofilin-driven actin dynamics in early events of Leishmania cell division.
T V Satish Tammana, Amogh A Sahasrabuddhe, Virendra K Bajpai, Chhitar M Gupta. J Cell Sci 2010
25
33

The advantages of microfluidics to study actin biochemistry and biomechanics.
Hugo Wioland, Emiko Suzuki, Luyan Cao, Guillaume Romet-Lemonne, Antoine Jegou. J Muscle Res Cell Motil 2020
4
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.